Wall clock time and date at job start Tue Mar 31 2020 11:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48508 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47204 * 299.99788 * 3 2 1 6 6 H 1.48498 * 109.47171 * 59.99934 * 3 2 1 7 7 C 1.37882 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99734 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47190 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.47500 * 64.99773 * 12 11 10 14 14 C 1.34749 * 117.00645 * 180.02562 * 13 12 11 15 15 O 1.21508 * 119.99764 * 359.97438 * 14 13 12 16 16 C 1.47397 * 120.00301 * 180.02562 * 14 13 12 17 17 C 1.39768 * 120.19768 * 359.97438 * 16 14 13 18 18 C 1.37765 * 119.90177 * 179.97438 * 17 16 14 19 19 C 1.38557 * 120.31024 * 0.02655 * 18 17 16 20 20 C 1.38060 * 120.40270 * 359.97438 * 19 18 17 21 21 C 1.38702 * 120.08999 * 359.95400 * 20 19 18 22 22 O 1.35638 * 120.15986 * 180.02562 * 21 20 19 23 23 C 1.42908 * 116.99244 * 0.02562 * 22 21 20 24 24 F 1.39896 * 109.46986 * 299.99832 * 23 22 21 25 25 F 1.39896 * 109.47084 * 60.00047 * 23 22 21 26 26 H 0.96994 * 120.00326 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47498 * 59.99923 * 9 7 2 28 28 H 1.09001 * 109.47328 * 299.99302 * 9 7 2 29 29 H 1.08994 * 109.47165 * 60.00069 * 11 10 9 30 30 H 1.09001 * 109.46889 * 299.99991 * 11 10 9 31 31 H 1.08999 * 109.47083 * 305.00119 * 12 11 10 32 32 H 1.08997 * 109.47599 * 185.00145 * 12 11 10 33 33 H 1.08004 * 120.04558 * 0.26071 * 17 16 14 34 34 H 1.08001 * 119.84001 * 180.02562 * 18 17 16 35 35 H 1.08003 * 119.80284 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.94995 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.46854 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6481 -5.9562 0.0017 13 8 3.3994 -5.8880 1.2424 14 6 4.3980 -6.7784 1.4027 15 8 4.6342 -7.5900 0.5298 16 6 5.2030 -6.7687 2.6374 17 6 4.9345 -5.8373 3.6444 18 6 5.6904 -5.8340 4.7961 19 6 6.7169 -6.7498 4.9615 20 6 6.9932 -7.6753 3.9750 21 6 6.2417 -7.6945 2.8093 22 8 6.5115 -8.6035 1.8395 23 6 7.5853 -9.5141 2.0846 24 9 8.7722 -8.7968 2.2683 25 9 7.3095 -10.2617 3.2344 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 0.9448 -4.9827 -0.8886 30 1 0.9453 -4.9822 0.8914 31 1 3.3217 -5.7960 -0.8401 32 1 2.1822 -6.9375 -0.0874 33 1 4.1326 -5.1243 3.5217 34 1 5.4817 -5.1142 5.5738 35 1 7.3046 -6.7396 5.8675 36 1 7.7953 -8.3855 4.1113 37 1 7.6947 -10.1847 1.2322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815174221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:31 Heat of formation + Delta-G solvation = -249.159584 kcal Electronic energy + Delta-G solvation = -25704.393076 eV Core-core repulsion = 21276.199178 eV Total energy + Delta-G solvation = -4428.193898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.73940 -47.71784 -40.80765 -39.54616 -37.71342 -36.97759 -35.89552 -32.78379 -31.89042 -30.61575 -29.94537 -26.97274 -26.51397 -24.66108 -22.91072 -22.42106 -22.05756 -21.04751 -19.31665 -18.52766 -18.29244 -17.80908 -16.88431 -16.45740 -16.40549 -16.17408 -15.38748 -15.29921 -15.05385 -14.89883 -14.55864 -14.37045 -14.26880 -14.14945 -14.03509 -13.55462 -13.26683 -12.95612 -12.87456 -12.60841 -12.21822 -12.08311 -11.90602 -11.49478 -11.42102 -10.90784 -10.87505 -10.73707 -10.35987 -10.30549 -10.04112 -9.39982 -9.11722 -8.88377 -8.81482 -8.21822 -6.12580 -4.14092 0.47849 0.99317 2.17010 2.53952 2.73326 3.06766 3.28692 3.35267 3.42033 3.48740 3.92008 4.25954 4.32391 4.40589 4.46713 4.69053 4.76241 4.82718 5.01145 5.16639 5.24165 5.25604 5.48084 5.52441 5.68901 5.87802 5.91760 5.95498 6.08660 6.12194 6.25201 6.57073 6.66723 7.05176 7.39360 7.78107 7.89833 8.12184 8.52203 8.99159 9.50824 10.99044 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.002666 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.498655 B =10498.575030 C =11173.477202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.077 3.923 13 O -0.338 6.338 14 C 0.507 3.493 15 O -0.499 6.499 16 C -0.141 4.141 17 C -0.024 4.024 18 C -0.157 4.157 19 C -0.048 4.048 20 C -0.209 4.209 21 C 0.165 3.835 22 O -0.290 6.290 23 C 0.407 3.593 24 F -0.198 7.198 25 F -0.199 7.199 26 H 0.264 0.736 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.549 -20.014 8.805 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.254 6.254 14 C 0.352 3.648 15 O -0.388 6.388 16 C -0.143 4.143 17 C -0.042 4.042 18 C -0.175 4.175 19 C -0.066 4.066 20 C -0.228 4.228 21 C 0.120 3.880 22 O -0.205 6.205 23 C 0.317 3.683 24 F -0.180 7.180 25 F -0.181 7.181 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.173 0.827 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 13.561 -20.118 8.355 25.660 hybrid contribution 0.233 0.723 0.091 0.765 sum 13.794 -19.394 8.447 25.254 Atomic orbital electron populations 1.69965 1.06107 1.27096 1.50644 1.24951 0.94981 0.99460 0.95130 0.86281 0.80062 0.82539 0.77627 1.19441 1.20851 1.20810 1.21092 0.94152 0.89279 1.50692 0.91437 1.20242 0.88749 0.83521 0.95507 1.87923 1.35303 1.12609 1.95227 1.22325 0.93233 0.85440 1.00597 1.23220 0.93574 0.98808 0.84086 1.86622 1.43261 1.53778 1.41719 1.20751 0.79066 0.78648 0.86381 1.90839 1.67703 1.37682 1.42600 1.18550 0.98977 1.00767 0.95981 1.21574 0.97477 0.94447 0.90712 1.21210 0.96977 1.00682 0.98622 1.21225 0.95386 0.92286 0.97752 1.21483 1.02958 1.04110 0.94239 1.18840 0.93221 0.88333 0.87579 1.86895 1.49381 1.42891 1.41365 1.23542 0.74244 0.83114 0.87416 1.93100 1.48936 1.79868 1.96123 1.93094 1.93181 1.76828 1.55020 0.92685 0.97624 0.97477 0.91882 0.93167 0.90419 0.90363 0.82748 0.84397 0.84725 0.84191 0.79930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -15.12 9.43 -34.44 -0.32 -15.45 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.28 5.69 36.00 0.20 5.49 16 10 O -0.39 -9.45 10.30 -38.80 -0.40 -9.85 16 11 C 0.06 1.13 6.33 37.16 0.24 1.36 16 12 C 0.08 1.24 5.85 37.16 0.22 1.46 16 13 O -0.34 -5.81 9.44 -43.41 -0.41 -6.22 16 14 C 0.51 8.34 7.89 34.46 0.27 8.61 16 15 O -0.50 -8.90 14.95 -26.60 -0.40 -9.30 16 16 C -0.14 -1.98 5.89 -104.86 -0.62 -2.60 16 17 C -0.02 -0.29 9.61 -39.18 -0.38 -0.67 16 18 C -0.16 -1.49 10.02 -39.64 -0.40 -1.89 16 19 C -0.05 -0.43 10.03 -39.53 -0.40 -0.82 16 20 C -0.21 -2.18 8.25 -39.48 -0.33 -2.50 16 21 C 0.17 2.12 6.50 -38.67 -0.25 1.87 16 22 O -0.29 -3.57 8.50 -40.50 -0.34 -3.91 16 23 C 0.41 3.25 5.98 101.05 0.60 3.85 16 24 F -0.20 -1.79 15.58 2.25 0.04 -1.75 16 25 F -0.20 -1.72 15.58 2.25 0.04 -1.69 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.15 1.85 7.61 -52.48 -0.40 1.45 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.14 1.29 5.10 -52.49 -0.27 1.02 16 37 H 0.18 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -34.90 337.36 -5.95 -40.85 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -4.02 Total: -4.20 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.25 Total: 0.22 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.55 Total: -29.28 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.07 Total: -3.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.90 -5.95 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815174221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.306 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds