Wall clock time and date at job start Tue Mar 31 2020 11:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48508 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47204 * 299.99788 * 3 2 1 6 6 H 1.48498 * 109.47171 * 59.99934 * 3 2 1 7 7 C 1.37882 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99734 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47190 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.47500 * 64.99773 * 12 11 10 14 14 C 1.34749 * 117.00645 * 180.02562 * 13 12 11 15 15 O 1.21508 * 119.99764 * 359.97438 * 14 13 12 16 16 C 1.47397 * 120.00301 * 180.02562 * 14 13 12 17 17 C 1.39768 * 120.19768 * 359.97438 * 16 14 13 18 18 C 1.37765 * 119.90177 * 179.97438 * 17 16 14 19 19 C 1.38557 * 120.31024 * 0.02655 * 18 17 16 20 20 C 1.38060 * 120.40270 * 359.97438 * 19 18 17 21 21 C 1.38702 * 120.08999 * 359.95400 * 20 19 18 22 22 O 1.35638 * 120.15986 * 180.02562 * 21 20 19 23 23 C 1.42908 * 116.99244 * 0.02562 * 22 21 20 24 24 F 1.39896 * 109.46986 * 299.99832 * 23 22 21 25 25 F 1.39896 * 109.47084 * 60.00047 * 23 22 21 26 26 H 0.96994 * 120.00326 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47498 * 59.99923 * 9 7 2 28 28 H 1.09001 * 109.47328 * 299.99302 * 9 7 2 29 29 H 1.08994 * 109.47165 * 60.00069 * 11 10 9 30 30 H 1.09001 * 109.46889 * 299.99991 * 11 10 9 31 31 H 1.08999 * 109.47083 * 305.00119 * 12 11 10 32 32 H 1.08997 * 109.47599 * 185.00145 * 12 11 10 33 33 H 1.08004 * 120.04558 * 0.26071 * 17 16 14 34 34 H 1.08001 * 119.84001 * 180.02562 * 18 17 16 35 35 H 1.08003 * 119.80284 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.94995 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.46854 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6481 -5.9562 0.0017 13 8 3.3994 -5.8880 1.2424 14 6 4.3980 -6.7784 1.4027 15 8 4.6342 -7.5900 0.5298 16 6 5.2030 -6.7687 2.6374 17 6 4.9345 -5.8373 3.6444 18 6 5.6904 -5.8340 4.7961 19 6 6.7169 -6.7498 4.9615 20 6 6.9932 -7.6753 3.9750 21 6 6.2417 -7.6945 2.8093 22 8 6.5115 -8.6035 1.8395 23 6 7.5853 -9.5141 2.0846 24 9 8.7722 -8.7968 2.2683 25 9 7.3095 -10.2617 3.2344 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 0.9448 -4.9827 -0.8886 30 1 0.9453 -4.9822 0.8914 31 1 3.3217 -5.7960 -0.8401 32 1 2.1822 -6.9375 -0.0874 33 1 4.1326 -5.1243 3.5217 34 1 5.4817 -5.1142 5.5738 35 1 7.3046 -6.7396 5.8675 36 1 7.7953 -8.3855 4.1113 37 1 7.6947 -10.1847 1.2322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815174221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:30 Heat of formation + Delta-G solvation = -270.626939 kcal Electronic energy + Delta-G solvation = -25705.323971 eV Core-core repulsion = 21276.199178 eV Total energy + Delta-G solvation = -4429.124793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.39012 -48.37077 -41.85303 -40.62142 -38.72570 -38.51070 -37.33455 -34.94740 -32.86998 -31.46534 -31.41804 -29.03377 -27.21510 -25.71300 -24.55392 -23.85879 -23.26575 -22.18099 -20.12146 -19.36088 -18.96793 -18.82792 -18.67856 -17.92921 -17.84550 -17.10310 -17.00861 -16.43081 -16.29939 -16.12363 -15.73466 -15.70888 -15.25989 -15.04547 -14.93652 -14.71261 -14.34367 -14.16948 -14.01189 -13.75380 -13.52850 -13.22560 -13.07145 -12.89200 -12.88002 -12.71781 -12.45033 -12.25657 -12.01108 -11.73985 -11.52188 -11.26469 -10.90099 -10.27697 -10.27126 -9.65478 -8.32363 -6.44335 -0.45372 0.16238 1.40877 1.41940 1.43248 1.48030 1.55362 1.56828 2.34859 2.44065 2.59038 3.01636 3.05703 3.37813 3.54286 3.61965 3.63236 3.83088 3.92308 4.08483 4.10036 4.22992 4.28536 4.40583 4.49734 4.61608 4.74781 4.85729 4.92260 5.15690 5.18038 5.29478 5.34090 5.44793 5.54831 5.84886 5.95305 6.49669 6.65153 6.79975 7.27340 8.80080 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.002666 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.498655 B =10498.575030 C =11173.477202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.079 3.921 13 O -0.352 6.352 14 C 0.504 3.496 15 O -0.521 6.521 16 C -0.174 4.174 17 C -0.035 4.035 18 C -0.152 4.152 19 C -0.033 4.033 20 C -0.213 4.213 21 C 0.153 3.847 22 O -0.314 6.314 23 C 0.404 3.596 24 F -0.205 7.205 25 F -0.203 7.203 26 H 0.271 0.729 27 H -0.008 1.008 28 H -0.009 1.009 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.020 -19.931 10.090 26.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.022 4.022 12 C 0.006 3.994 13 O -0.269 6.269 14 C 0.351 3.649 15 O -0.412 6.412 16 C -0.175 4.175 17 C -0.053 4.053 18 C -0.170 4.170 19 C -0.051 4.051 20 C -0.231 4.231 21 C 0.108 3.892 22 O -0.231 6.231 23 C 0.315 3.685 24 F -0.186 7.186 25 F -0.185 7.185 26 H 0.080 0.920 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.164 0.836 34 H 0.184 0.816 35 H 0.192 0.808 36 H 0.170 0.830 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 15.030 -20.060 9.647 26.858 hybrid contribution -0.205 0.588 -0.250 0.671 sum 14.825 -19.472 9.397 26.215 Atomic orbital electron populations 1.70059 1.07658 1.28637 1.50478 1.25930 0.95969 1.03280 0.93894 0.85151 0.78608 0.77389 0.78352 1.19017 1.19668 1.19460 1.21407 0.94052 0.90930 1.52285 0.92260 1.19880 0.88548 0.84339 0.93937 1.87870 1.35557 1.14197 1.95340 1.22637 0.94323 0.83232 1.01973 1.23215 0.93064 0.99326 0.83773 1.86616 1.43849 1.54451 1.41975 1.21237 0.78686 0.77923 0.87069 1.90802 1.68331 1.38505 1.43574 1.18621 1.00228 1.02914 0.95783 1.21628 0.98018 0.94148 0.91504 1.21545 0.96267 1.01085 0.98058 1.21707 0.94594 0.90483 0.98332 1.21736 1.02868 1.04781 0.93746 1.19070 0.93274 0.88370 0.88506 1.86865 1.50897 1.43385 1.41934 1.24265 0.72934 0.82719 0.88564 1.93082 1.49156 1.80184 1.96221 1.93079 1.93159 1.76686 1.55574 0.91978 0.99035 0.99109 0.89841 0.92356 0.91100 0.87325 0.83649 0.81572 0.80825 0.82979 0.75552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 2 C 0.01 0.45 5.46 84.66 0.46 0.92 16 3 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -32.93 9.43 25.60 0.24 -32.68 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.66 5.69 71.23 0.41 12.07 16 10 O -0.41 -20.34 10.30 -145.57 -1.50 -21.84 16 11 C 0.06 2.03 6.33 71.98 0.46 2.49 16 12 C 0.08 2.60 5.85 71.98 0.42 3.02 16 13 O -0.35 -12.50 9.44 -53.93 -0.51 -13.01 16 14 C 0.50 17.16 7.89 70.23 0.55 17.72 16 15 O -0.52 -19.11 14.95 26.81 0.40 -18.71 16 16 C -0.17 -4.99 5.89 -20.02 -0.12 -5.11 16 17 C -0.03 -0.84 9.61 22.53 0.22 -0.62 16 18 C -0.15 -2.57 10.02 22.23 0.22 -2.35 16 19 C -0.03 -0.49 10.03 22.30 0.22 -0.27 16 20 C -0.21 -4.07 8.25 22.34 0.18 -3.89 16 21 C 0.15 3.88 6.50 22.86 0.15 4.03 16 22 O -0.31 -7.70 8.50 -68.59 -0.58 -8.28 16 23 C 0.40 5.93 5.98 113.37 0.68 6.61 16 24 F -0.20 -3.41 15.58 44.97 0.70 -2.71 16 25 F -0.20 -3.23 15.58 44.97 0.70 -2.52 16 26 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.08 2.73 8.14 -2.39 -0.02 2.72 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.15 3.64 7.61 -2.91 -0.02 3.62 16 34 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.15 2.48 5.10 -2.91 -0.01 2.46 16 37 H 0.23 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.77 337.36 6.73 -70.04 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.11 Total: 3.91 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 4.10 Total: 1.93 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.20 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -2.19 Total: -61.83 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 1.40 Total: -5.23 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -76.77 6.73 -70.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815174221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.586 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds