Wall clock time and date at job start Tue Mar 31 2020 11:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86807 * 119.99647 * 2 1 4 4 H 1.48500 * 109.47094 * 239.99695 * 3 2 1 5 5 H 1.48493 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46575 * 120.00175 * 3 2 1 7 7 C 1.38650 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99892 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00354 * 174.90190 * 9 7 2 11 11 C 1.38940 * 120.04338 * 185.96653 * 10 9 7 12 12 C 1.38104 * 120.04254 * 179.97438 * 11 10 9 13 13 C 1.38234 * 120.12479 * 359.71585 * 12 11 10 14 14 C 1.38776 * 120.07799 * 0.55822 * 13 12 11 15 15 O 1.35922 * 120.01957 * 179.72299 * 14 13 12 16 16 C 1.34272 * 117.00055 * 246.46437 * 15 14 13 17 17 O 1.20827 * 119.99675 * 5.33361 * 16 15 14 18 18 C 1.50695 * 120.00348 * 185.33723 * 16 15 14 19 19 C 1.53000 * 109.47218 * 179.97438 * 18 16 15 20 20 O 1.42903 * 109.46866 * 179.97438 * 19 18 16 21 21 C 1.42904 * 113.99387 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46764 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.46805 * 299.99822 * 22 21 20 24 24 F 1.39897 * 109.47347 * 59.99635 * 22 21 20 25 25 C 1.38612 * 119.96181 * 359.44305 * 14 13 12 26 26 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.97471 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.93883 * 179.97438 * 12 11 10 29 29 H 1.08005 * 119.95972 * 180.30204 * 13 12 11 30 30 H 1.09006 * 109.46729 * 299.99805 * 18 16 15 31 31 H 1.08999 * 109.47310 * 59.99117 * 18 16 15 32 32 H 1.08995 * 109.46737 * 299.99679 * 19 18 16 33 33 H 1.09000 * 109.46939 * 59.99744 * 19 18 16 34 34 H 1.08999 * 109.47452 * 299.99813 * 21 20 19 35 35 H 1.08993 * 109.47121 * 60.00365 * 21 20 19 36 36 H 1.08995 * 109.47039 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.06115 * 180.25294 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5045 -0.1064 11 6 1.4358 -4.7337 -0.2377 12 6 2.1838 -5.8895 -0.3470 13 6 3.5646 -5.8262 -0.3321 14 6 4.2033 -4.6017 -0.1954 15 8 5.5611 -4.5415 -0.1752 16 6 6.1371 -4.1558 0.9747 17 8 5.4596 -3.9743 1.9586 18 6 7.6285 -3.9492 1.0383 19 6 8.0234 -3.5144 2.4510 20 8 9.4377 -3.3191 2.5114 21 6 9.9134 -2.9086 3.7949 22 6 11.4321 -2.7302 3.7427 23 9 12.0323 -3.9434 3.3890 24 9 11.7548 -1.7557 2.7922 25 6 3.4559 -3.4396 -0.0854 26 1 -0.4850 0.8400 0.0004 27 1 0.3571 -4.7853 -0.2543 28 1 1.6891 -6.8441 -0.4486 29 1 4.1471 -6.7312 -0.4226 30 1 8.1353 -4.8817 0.7897 31 1 7.9190 -3.1768 0.3262 32 1 7.5166 -2.5819 2.6991 33 1 7.7328 -4.2865 3.1634 34 1 9.4462 -1.9632 4.0703 35 1 9.6617 -3.6677 4.5354 36 1 11.7951 -2.4176 4.7217 37 1 3.9514 -2.4854 0.0168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:29 Heat of formation + Delta-G solvation = -225.578804 kcal Electronic energy + Delta-G solvation = -25264.578085 eV Core-core repulsion = 20837.406726 eV Total energy + Delta-G solvation = -4427.171359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.23245 -47.26840 -41.03987 -38.95652 -38.40154 -37.13080 -35.77959 -32.62253 -32.33575 -30.15082 -29.53191 -28.92792 -25.58524 -24.87716 -23.32712 -22.39263 -21.64564 -20.40306 -18.47167 -18.29144 -17.87588 -17.83362 -17.28353 -16.86396 -16.66186 -16.08048 -15.79294 -15.60314 -15.16378 -14.53594 -14.38229 -14.19012 -14.10844 -13.71515 -13.63167 -13.54925 -13.45052 -13.02651 -12.78635 -12.63581 -12.02412 -11.79923 -11.76489 -11.59351 -11.33459 -11.30725 -11.10033 -10.88418 -10.56456 -10.51241 -10.33968 -10.14715 -9.57809 -8.90689 -8.19223 -7.39286 -6.51670 -4.11380 1.66984 2.16810 2.26086 2.56949 3.09678 3.10503 3.13538 3.25970 3.56289 3.79628 3.91374 4.08136 4.40063 4.42850 4.61466 4.69204 4.78733 4.96929 4.99592 5.01025 5.14035 5.22146 5.43285 5.46439 5.56237 5.73801 5.95971 6.10718 6.22979 6.52068 6.53637 6.82623 6.94606 7.04370 7.09358 7.28430 7.53511 7.91412 8.05255 8.93132 9.59197 10.65690 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.003048 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.411334 B = 9183.130223 C =11195.490667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.090 0.910 9 O -0.169 6.169 10 C 0.165 3.835 11 C -0.187 4.187 12 C -0.064 4.064 13 C -0.211 4.211 14 C 0.121 3.879 15 O -0.292 6.292 16 C 0.459 3.541 17 O -0.485 6.485 18 C -0.110 4.110 19 C 0.073 3.927 20 O -0.377 6.377 21 C 0.011 3.989 22 C 0.272 3.728 23 F -0.200 7.200 24 F -0.199 7.199 25 C -0.236 4.236 26 H 0.272 0.728 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.006 -6.517 6.506 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.107 0.893 9 O -0.072 6.072 10 C 0.110 3.890 11 C -0.206 4.206 12 C -0.082 4.082 13 C -0.230 4.230 14 C 0.081 3.919 15 O -0.207 6.207 16 C 0.302 3.698 17 O -0.370 6.370 18 C -0.147 4.147 19 C -0.003 4.003 20 O -0.297 6.297 21 C -0.067 4.067 22 C 0.218 3.782 23 F -0.182 7.182 24 F -0.180 7.180 25 C -0.255 4.255 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.464 -6.270 6.649 20.602 hybrid contribution 0.348 0.889 0.141 0.965 sum 18.812 -5.381 6.790 20.711 Atomic orbital electron populations 1.70019 1.05956 1.27981 1.45405 1.25286 0.95863 0.98834 0.96280 0.85787 0.78790 0.79642 0.79304 1.19348 1.20077 1.19442 1.21259 0.91712 0.80754 1.53273 0.89273 1.83994 1.33986 1.11380 1.77875 1.19109 0.89257 0.88435 0.92171 1.20340 1.00057 0.90204 1.10028 1.20494 0.92531 0.97229 0.97985 1.20432 0.94589 0.95189 1.12774 1.18238 0.78623 0.93691 1.01391 1.84496 1.21028 1.78391 1.36830 1.23562 0.91150 0.73790 0.81292 1.90746 1.65191 1.45224 1.35804 1.21053 0.88362 1.06268 0.99066 1.22248 0.80299 1.01727 0.96020 1.87865 1.22758 1.89138 1.29898 1.23683 0.92805 1.02371 0.87870 1.22031 0.91260 0.73841 0.91085 1.93013 1.85260 1.46112 1.93775 1.93020 1.93858 1.62859 1.68310 1.21178 0.94398 0.97962 1.12006 0.91801 0.85834 0.85901 0.86619 0.86569 0.86437 0.91423 0.91607 0.89800 0.89892 0.85779 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.08 13.67 55.48 0.76 -24.33 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 3 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.14 9.49 30.88 0.29 -10.84 16 8 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 9 O -0.17 -4.86 9.76 0.07 0.00 -4.86 16 10 C 0.16 4.06 6.64 -39.13 -0.26 3.80 16 11 C -0.19 -3.93 9.99 -39.37 -0.39 -4.32 16 12 C -0.06 -1.14 10.03 -39.63 -0.40 -1.54 16 13 C -0.21 -3.83 9.98 -39.38 -0.39 -4.22 16 14 C 0.12 2.45 5.34 -39.24 -0.21 2.24 16 15 O -0.29 -5.13 10.04 -23.63 -0.24 -5.36 16 16 C 0.46 7.26 7.72 36.00 0.28 7.54 16 17 O -0.48 -9.27 15.30 -18.75 -0.29 -9.56 16 18 C -0.11 -1.20 6.18 -27.89 -0.17 -1.37 16 19 C 0.07 0.77 5.23 37.16 0.19 0.96 16 20 O -0.38 -3.92 10.23 -35.23 -0.36 -4.28 16 21 C 0.01 0.07 6.16 37.16 0.23 0.30 16 22 C 0.27 1.83 5.63 37.16 0.21 2.04 16 23 F -0.20 -1.89 17.28 2.25 0.04 -1.85 16 24 F -0.20 -1.95 17.28 2.25 0.04 -1.91 16 25 C -0.24 -5.43 8.30 -39.25 -0.33 -5.76 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 28 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 29 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.13 3.08 5.64 -52.49 -0.30 2.79 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -34.45 340.86 -4.91 -39.35 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.93 Total: 2.21 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.04 Total: -10.10 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.76 Total: -24.33 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.88 Total: -24.07 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.45 -4.91 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.226 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds