Wall clock time and date at job start Tue Mar 31 2020 11:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86807 * 119.99647 * 2 1 4 4 H 1.48500 * 109.47094 * 239.99695 * 3 2 1 5 5 H 1.48493 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46575 * 120.00175 * 3 2 1 7 7 C 1.38650 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99892 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00354 * 174.90190 * 9 7 2 11 11 C 1.38940 * 120.04338 * 185.96653 * 10 9 7 12 12 C 1.38104 * 120.04254 * 179.97438 * 11 10 9 13 13 C 1.38234 * 120.12479 * 359.71585 * 12 11 10 14 14 C 1.38776 * 120.07799 * 0.55822 * 13 12 11 15 15 O 1.35922 * 120.01957 * 179.72299 * 14 13 12 16 16 C 1.34272 * 117.00055 * 246.46437 * 15 14 13 17 17 O 1.20827 * 119.99675 * 5.33361 * 16 15 14 18 18 C 1.50695 * 120.00348 * 185.33723 * 16 15 14 19 19 C 1.53000 * 109.47218 * 179.97438 * 18 16 15 20 20 O 1.42903 * 109.46866 * 179.97438 * 19 18 16 21 21 C 1.42904 * 113.99387 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46764 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.46805 * 299.99822 * 22 21 20 24 24 F 1.39897 * 109.47347 * 59.99635 * 22 21 20 25 25 C 1.38612 * 119.96181 * 359.44305 * 14 13 12 26 26 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.97471 * 359.97438 * 11 10 9 28 28 H 1.08003 * 119.93883 * 179.97438 * 12 11 10 29 29 H 1.08005 * 119.95972 * 180.30204 * 13 12 11 30 30 H 1.09006 * 109.46729 * 299.99805 * 18 16 15 31 31 H 1.08999 * 109.47310 * 59.99117 * 18 16 15 32 32 H 1.08995 * 109.46737 * 299.99679 * 19 18 16 33 33 H 1.09000 * 109.46939 * 59.99744 * 19 18 16 34 34 H 1.08999 * 109.47452 * 299.99813 * 21 20 19 35 35 H 1.08993 * 109.47121 * 60.00365 * 21 20 19 36 36 H 1.08995 * 109.47039 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.06115 * 180.25294 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1032 1.6964 1.2126 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5045 -0.1064 11 6 1.4358 -4.7337 -0.2377 12 6 2.1838 -5.8895 -0.3470 13 6 3.5646 -5.8262 -0.3321 14 6 4.2033 -4.6017 -0.1954 15 8 5.5611 -4.5415 -0.1752 16 6 6.1371 -4.1558 0.9747 17 8 5.4596 -3.9743 1.9586 18 6 7.6285 -3.9492 1.0383 19 6 8.0234 -3.5144 2.4510 20 8 9.4377 -3.3191 2.5114 21 6 9.9134 -2.9086 3.7949 22 6 11.4321 -2.7302 3.7427 23 9 12.0323 -3.9434 3.3890 24 9 11.7548 -1.7557 2.7922 25 6 3.4559 -3.4396 -0.0854 26 1 -0.4850 0.8400 0.0004 27 1 0.3571 -4.7853 -0.2543 28 1 1.6891 -6.8441 -0.4486 29 1 4.1471 -6.7312 -0.4226 30 1 8.1353 -4.8817 0.7897 31 1 7.9190 -3.1768 0.3262 32 1 7.5166 -2.5819 2.6991 33 1 7.7328 -4.2865 3.1634 34 1 9.4462 -1.9632 4.0703 35 1 9.6617 -3.6677 4.5354 36 1 11.7951 -2.4176 4.7217 37 1 3.9514 -2.4854 0.0168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:28 Heat of formation + Delta-G solvation = -247.615293 kcal Electronic energy + Delta-G solvation = -25265.533659 eV Core-core repulsion = 20837.406726 eV Total energy + Delta-G solvation = -4428.126933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.83919 -47.89980 -42.45428 -40.63147 -39.32150 -38.57303 -37.39491 -34.36547 -33.50877 -31.42730 -30.75908 -30.36357 -27.51992 -26.06491 -23.89077 -23.76945 -23.28465 -21.78654 -20.15475 -19.65444 -18.96924 -18.45221 -18.31829 -17.89642 -17.72704 -17.33192 -16.90908 -16.82384 -16.60401 -16.08494 -15.97222 -15.62070 -15.11715 -14.88941 -14.84314 -14.64759 -14.46930 -14.27971 -14.12701 -13.71801 -13.44946 -13.26068 -13.00167 -12.78733 -12.59220 -12.55268 -12.44685 -12.21347 -12.02111 -11.90014 -11.82270 -11.48133 -10.87203 -10.86033 -9.81037 -9.17410 -8.54526 -6.24250 0.10552 0.53235 0.97346 1.29640 1.38887 1.46015 1.46696 2.11869 2.44113 2.72377 2.97530 3.04024 3.35201 3.38432 3.46746 3.58791 3.82086 3.87880 3.97247 4.15685 4.20270 4.29612 4.31379 4.33701 4.49468 4.51154 4.62839 4.65455 4.77716 4.92506 4.99543 5.31160 5.41864 5.49278 5.52574 5.84292 5.92062 5.97050 6.64569 6.88956 7.64307 8.67612 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.003048 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.411334 B = 9183.130223 C =11195.490667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.015 4.015 3 Si 1.014 2.986 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.419 4.419 8 H 0.092 0.908 9 O -0.220 6.220 10 C 0.127 3.873 11 C -0.196 4.196 12 C -0.047 4.047 13 C -0.190 4.190 14 C 0.114 3.886 15 O -0.290 6.290 16 C 0.460 3.540 17 O -0.522 6.522 18 C -0.100 4.100 19 C 0.078 3.922 20 O -0.395 6.395 21 C 0.000 4.000 22 C 0.264 3.736 23 F -0.218 7.218 24 F -0.220 7.220 25 C -0.252 4.252 26 H 0.276 0.724 27 H 0.130 0.870 28 H 0.176 0.824 29 H 0.159 0.841 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.175 0.825 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.381 -8.216 6.797 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.214 4.214 3 Si 0.833 3.167 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.109 0.891 9 O -0.127 6.127 10 C 0.076 3.924 11 C -0.215 4.215 12 C -0.064 4.064 13 C -0.209 4.209 14 C 0.073 3.927 15 O -0.205 6.205 16 C 0.305 3.695 17 O -0.409 6.409 18 C -0.137 4.137 19 C 0.001 3.999 20 O -0.315 6.315 21 C -0.077 4.077 22 C 0.211 3.789 23 F -0.199 7.199 24 F -0.201 7.201 25 C -0.272 4.272 26 H 0.085 0.915 27 H 0.148 0.852 28 H 0.194 0.806 29 H 0.176 0.824 30 H 0.162 0.838 31 H 0.149 0.851 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.192 0.808 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 20.882 -8.023 6.934 23.420 hybrid contribution -0.240 1.078 0.069 1.106 sum 20.642 -6.946 7.003 22.877 Atomic orbital electron populations 1.70146 1.07835 1.29156 1.47902 1.26540 0.96891 1.02516 0.95459 0.84727 0.77632 0.74476 0.79893 1.18083 1.18822 1.18475 1.21657 0.92120 0.81578 1.54176 0.89100 1.83954 1.35352 1.12390 1.80965 1.19710 0.90234 0.88716 0.93713 1.20716 1.00968 0.90066 1.09755 1.21085 0.92408 0.98001 0.94926 1.21049 0.95179 0.95710 1.08932 1.18436 0.79911 0.93543 1.00841 1.84521 1.19477 1.78616 1.37860 1.24524 0.92740 0.72168 0.80061 1.90738 1.66360 1.46839 1.36916 1.21162 0.84494 1.08102 0.99938 1.22134 0.80699 1.01347 0.95691 1.87827 1.22178 1.89432 1.32059 1.24012 0.93012 1.03739 0.86957 1.22665 0.91100 0.72710 0.92421 1.92973 1.85566 1.47325 1.94069 1.92975 1.94013 1.63665 1.69486 1.21162 0.94208 0.98541 1.13316 0.91490 0.85172 0.80631 0.82352 0.83786 0.85060 0.92473 0.91265 0.88460 0.87827 0.80815 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.67 21.61 0.30 -55.74 16 2 C -0.02 -0.89 5.49 84.83 0.47 -0.42 16 3 Si 1.01 43.44 29.55 68.60 2.03 45.46 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.42 -25.15 9.49 67.92 0.64 -24.51 16 8 H 0.09 5.16 5.21 -2.91 -0.02 5.15 16 9 O -0.22 -13.48 9.76 -22.65 -0.22 -13.70 16 10 C 0.13 6.52 6.64 22.56 0.15 6.67 16 11 C -0.20 -8.16 9.99 22.41 0.22 -7.93 16 12 C -0.05 -1.49 10.03 22.24 0.22 -1.26 16 13 C -0.19 -6.19 9.98 22.40 0.22 -5.97 16 14 C 0.11 4.45 5.34 22.49 0.12 4.57 16 15 O -0.29 -9.67 10.04 4.48 0.05 -9.63 16 16 C 0.46 14.00 7.72 71.23 0.55 14.55 16 17 O -0.52 -19.87 15.30 21.96 0.34 -19.54 16 18 C -0.10 -1.98 6.18 29.85 0.18 -1.79 16 19 C 0.08 1.52 5.23 71.98 0.38 1.89 16 20 O -0.40 -7.51 10.23 -148.98 -1.52 -9.03 16 21 C 0.00 0.00 6.16 71.98 0.44 0.44 16 22 C 0.26 2.98 5.63 71.98 0.41 3.38 16 23 F -0.22 -3.75 17.28 44.97 0.78 -2.98 16 24 F -0.22 -4.03 17.28 44.97 0.78 -3.25 16 25 C -0.25 -11.98 8.30 22.49 0.19 -11.80 16 26 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 28 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.14 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.07 1.28 8.10 -2.39 -0.02 1.27 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.18 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.11 5.56 5.64 -2.91 -0.02 5.54 16 Total: -1.00 -81.12 340.86 7.82 -73.30 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.11 Total: 17.27 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 4.20 Total: -22.17 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.30 Total: -55.74 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -1.36 Total: -51.90 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 1.55 Total: -6.23 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -81.12 7.82 -73.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.314 kcal (2) G-P(sol) polarization free energy of solvation -81.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds