Wall clock time and date at job start Tue Mar 31 2020 11:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99948 * 2 1 4 4 H 1.09002 * 109.46990 * 329.99113 * 3 2 1 5 5 C 1.52989 * 109.47647 * 89.99378 * 3 2 1 6 6 C 1.53002 * 109.46804 * 209.99771 * 3 2 1 7 7 S 1.81406 * 109.47338 * 64.99739 * 6 3 2 8 8 O 1.42102 * 110.54077 * 68.37380 * 7 6 3 9 9 O 1.42100 * 110.54012 * 291.62097 * 7 6 3 10 10 O 1.52202 * 104.44758 * 179.97438 * 7 6 3 11 11 C 1.35904 * 113.99732 * 75.00229 * 10 7 6 12 12 C 1.38827 * 120.01699 * 269.97476 * 11 10 7 13 13 C 1.38189 * 120.07975 * 180.02562 * 12 11 10 14 14 C 1.38149 * 120.12386 * 359.97438 * 13 12 11 15 15 C 1.38898 * 120.04054 * 0.03975 * 14 13 12 16 16 O 1.35749 * 120.03866 * 179.97438 * 15 14 13 17 17 C 1.34836 * 117.00488 * 354.39630 * 16 15 14 18 18 H 1.07999 * 119.99235 * 5.04658 * 17 16 15 19 19 C 1.38653 * 119.99938 * 185.05439 * 17 16 15 20 20 N 1.31556 * 120.00414 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99378 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47328 * 59.99810 * 21 19 17 23 23 H 1.48504 * 109.47112 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47251 * 299.99551 * 21 19 17 25 25 C 1.38564 * 120.02268 * 89.99553 * 11 10 7 26 26 H 1.09000 * 109.47290 * 300.00539 * 1 2 3 27 27 H 1.09004 * 109.46624 * 60.00779 * 1 2 3 28 28 H 1.08998 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47470 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47547 * 300.00450 * 5 3 2 31 31 H 1.09002 * 109.47141 * 59.99828 * 5 3 2 32 32 H 1.08995 * 109.47272 * 304.99206 * 6 3 2 33 33 H 1.09005 * 109.47172 * 184.99327 * 6 3 2 34 34 H 1.08001 * 119.96166 * 0.02562 * 12 11 10 35 35 H 1.07999 * 119.93893 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.98219 * 180.02562 * 14 13 12 37 37 H 0.96994 * 120.00171 * 180.02562 * 20 19 17 38 38 H 1.08005 * 120.06149 * 359.70298 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7715 1.4423 6 6 3.3589 1.2632 -0.7212 7 16 3.0975 0.8542 -2.4691 8 8 2.4376 1.9206 -3.1374 9 8 2.6467 -0.4865 -2.6054 10 8 4.4959 0.8435 -3.0699 11 6 5.2294 -0.2530 -2.7433 12 6 6.0259 -0.2422 -1.6063 13 6 6.7727 -1.3562 -1.2732 14 6 6.7288 -2.4839 -2.0700 15 6 5.9338 -2.5002 -3.2088 16 8 5.8911 -3.6081 -3.9920 17 6 6.7302 -4.6148 -3.6749 18 1 7.3372 -4.5513 -2.7839 19 6 6.8139 -5.7312 -4.4928 20 7 6.0743 -5.8087 -5.5780 21 14 7.9771 -7.1254 -4.0537 22 1 7.6068 -7.6797 -2.7267 23 1 7.8792 -8.1937 -5.0806 24 1 9.3694 -6.6115 -4.0045 25 6 5.1831 -1.3821 -3.5451 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 2.6613 2.7671 1.4423 30 1 1.2568 1.8016 1.9562 31 1 2.8828 1.0776 1.9563 32 1 3.9931 0.5052 -0.2616 33 1 3.8427 2.2369 -0.6444 34 1 6.0620 0.6378 -0.9813 35 1 7.3913 -1.3455 -0.3880 36 1 7.3131 -3.3534 -1.8073 37 1 6.1326 -6.5899 -6.1499 38 1 4.5605 -1.3939 -4.4276 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841565821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:38 Heat of formation + Delta-G solvation = -145.794466 kcal Electronic energy + Delta-G solvation = -24798.179970 eV Core-core repulsion = 20928.308706 eV Total energy + Delta-G solvation = -3869.871264 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.090 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61912 -38.74015 -38.61163 -37.00480 -36.05623 -35.83068 -33.22471 -32.44386 -30.09873 -29.02306 -28.08510 -26.75547 -25.54194 -23.05076 -22.33801 -21.63734 -20.21908 -18.59147 -17.75396 -17.57962 -17.19869 -17.05970 -16.24708 -15.60839 -15.41505 -15.29305 -14.81427 -14.68424 -14.32377 -13.81383 -13.61315 -13.42357 -13.14340 -13.02003 -12.87267 -12.65595 -12.64107 -12.26422 -11.95474 -11.83717 -11.79939 -11.76783 -11.38394 -11.37047 -11.15777 -10.96112 -10.84131 -10.74462 -10.56792 -9.90507 -9.57282 -8.98961 -8.40493 -7.53746 -6.57777 -4.17118 0.20821 1.71844 2.01930 2.40557 3.07205 3.08057 3.11773 3.33174 3.73932 3.84992 4.15201 4.22377 4.28561 4.53346 4.71117 4.88488 4.97721 5.05307 5.08719 5.18499 5.27177 5.29418 5.33915 5.46240 5.55887 5.61596 5.62065 5.82075 5.82281 6.02519 6.37773 6.56314 6.69109 6.79275 6.85108 7.06586 7.19420 7.47187 7.84400 8.85469 9.50402 10.58864 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.003490 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.605953 B = 8022.025617 C = 8084.655157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.376 6.376 3 C 0.097 3.903 4 H 0.074 0.926 5 C -0.165 4.165 6 C -0.658 4.658 7 S 2.595 3.405 8 O -0.944 6.944 9 O -0.924 6.924 10 O -0.663 6.663 11 C 0.100 3.900 12 C -0.231 4.231 13 C -0.054 4.054 14 C -0.221 4.221 15 C 0.164 3.836 16 O -0.162 6.162 17 C -0.396 4.396 18 H 0.096 0.904 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.155 4.155 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.274 0.726 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 12.609 13.129 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.038 3.962 4 H 0.092 0.908 5 C -0.224 4.224 6 C -0.783 4.783 7 S 2.689 3.311 8 O -0.942 6.942 9 O -0.923 6.923 10 O -0.623 6.623 11 C 0.058 3.942 12 C -0.253 4.253 13 C -0.072 4.072 14 C -0.241 4.241 15 C 0.109 3.891 16 O -0.064 6.064 17 C -0.472 4.472 18 H 0.114 0.886 19 C -0.164 4.164 20 N -0.485 5.485 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.177 4.177 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.038 12.218 11.976 17.835 hybrid contribution 0.546 -0.079 0.871 1.031 sum -4.492 12.139 12.847 18.237 Atomic orbital electron populations 1.22925 0.80290 1.03821 1.00064 1.88099 1.20359 1.25969 1.95056 1.21624 0.91190 0.86112 0.97281 0.90801 1.22209 1.02866 1.01968 0.95322 1.31041 1.06234 1.13541 1.27487 1.05529 0.73863 0.75000 0.76700 1.93597 1.71538 1.58076 1.70977 1.93703 1.79082 1.35528 1.83977 1.85638 1.47693 1.50491 1.78467 1.17513 0.97288 0.82429 0.96929 1.20617 1.04907 1.00698 0.99040 1.20558 0.96707 0.91768 0.98201 1.21346 1.05108 1.00339 0.97291 1.18924 0.92583 0.87262 0.90368 1.83991 1.54117 1.20508 1.47791 1.21374 1.20068 0.95364 1.10346 0.88624 1.25373 0.97805 0.98308 0.94918 1.70032 1.36725 1.29574 1.12159 0.85713 0.79504 0.79203 0.78630 1.19287 1.20140 1.19320 1.20154 1.04391 0.90851 1.02262 0.93717 0.93631 0.88646 0.91197 0.91816 0.91043 0.83068 0.83658 0.86038 0.85808 0.84468 0.91578 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.95 9.68 -36.21 -0.35 -5.30 16 3 C 0.10 1.05 2.71 -26.74 -0.07 0.98 16 4 H 0.07 0.70 7.79 -51.93 -0.40 0.29 16 5 C -0.17 -1.34 9.53 37.15 0.35 -0.99 16 6 C -0.66 -7.49 5.15 37.16 0.19 -7.30 16 7 S 2.59 42.25 5.02 -107.50 -0.54 41.71 16 8 O -0.94 -16.83 18.09 -67.04 -1.21 -18.04 16 9 O -0.92 -18.34 15.79 -67.83 -1.07 -19.41 16 10 O -0.66 -11.62 10.05 -51.76 -0.52 -12.14 16 11 C 0.10 1.90 4.80 -39.24 -0.19 1.71 16 12 C -0.23 -3.74 8.46 -39.38 -0.33 -4.07 16 13 C -0.05 -0.88 10.03 -39.63 -0.40 -1.28 16 14 C -0.22 -4.44 9.17 -39.37 -0.36 -4.80 16 15 C 0.16 3.90 6.64 -39.13 -0.26 3.64 16 16 O -0.16 -4.52 9.76 0.04 0.00 -4.52 16 17 C -0.40 -10.61 9.49 30.89 0.29 -10.32 16 18 H 0.10 2.29 5.20 -52.49 -0.27 2.02 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.85 -24.34 13.67 55.48 0.76 -23.58 16 21 Si 0.95 19.61 29.55 -169.99 -5.02 14.59 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.15 -3.45 8.99 -39.25 -0.35 -3.80 16 26 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 27 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 7.87 -51.93 -0.41 0.04 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.15 1.68 6.60 -51.93 -0.34 1.33 16 33 H 0.15 1.15 8.14 -51.92 -0.42 0.72 16 34 H 0.12 1.47 7.49 -52.49 -0.39 1.07 16 35 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.14 2.66 5.63 -52.49 -0.30 2.36 16 37 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.13 3.01 8.06 -52.48 -0.42 2.58 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -34.05 337.74 -7.62 -41.67 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.62 Total: 3.81 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -0.13 Total: -23.86 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.76 Total: -23.58 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -3.15 Total: -59.42 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 42.25 SS G_CDS: -0.54 Total: 41.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.05 -7.62 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841565821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.125 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds