Wall clock time and date at job start Tue Mar 31 2020 11:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99948 * 2 1 4 4 H 1.09002 * 109.46990 * 329.99113 * 3 2 1 5 5 C 1.52989 * 109.47647 * 89.99378 * 3 2 1 6 6 C 1.53002 * 109.46804 * 209.99771 * 3 2 1 7 7 S 1.81406 * 109.47338 * 64.99739 * 6 3 2 8 8 O 1.42102 * 110.54077 * 68.37380 * 7 6 3 9 9 O 1.42100 * 110.54012 * 291.62097 * 7 6 3 10 10 O 1.52202 * 104.44758 * 179.97438 * 7 6 3 11 11 C 1.35904 * 113.99732 * 75.00229 * 10 7 6 12 12 C 1.38827 * 120.01699 * 269.97476 * 11 10 7 13 13 C 1.38189 * 120.07975 * 180.02562 * 12 11 10 14 14 C 1.38149 * 120.12386 * 359.97438 * 13 12 11 15 15 C 1.38898 * 120.04054 * 0.03975 * 14 13 12 16 16 O 1.35749 * 120.03866 * 179.97438 * 15 14 13 17 17 C 1.34836 * 117.00488 * 354.39630 * 16 15 14 18 18 H 1.07999 * 119.99235 * 5.04658 * 17 16 15 19 19 C 1.38653 * 119.99938 * 185.05439 * 17 16 15 20 20 N 1.31556 * 120.00414 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99378 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47328 * 59.99810 * 21 19 17 23 23 H 1.48504 * 109.47112 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47251 * 299.99551 * 21 19 17 25 25 C 1.38564 * 120.02268 * 89.99553 * 11 10 7 26 26 H 1.09000 * 109.47290 * 300.00539 * 1 2 3 27 27 H 1.09004 * 109.46624 * 60.00779 * 1 2 3 28 28 H 1.08998 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47470 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47547 * 300.00450 * 5 3 2 31 31 H 1.09002 * 109.47141 * 59.99828 * 5 3 2 32 32 H 1.08995 * 109.47272 * 304.99206 * 6 3 2 33 33 H 1.09005 * 109.47172 * 184.99327 * 6 3 2 34 34 H 1.08001 * 119.96166 * 0.02562 * 12 11 10 35 35 H 1.07999 * 119.93893 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.98219 * 180.02562 * 14 13 12 37 37 H 0.96994 * 120.00171 * 180.02562 * 20 19 17 38 38 H 1.08005 * 120.06149 * 359.70298 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7715 1.4423 6 6 3.3589 1.2632 -0.7212 7 16 3.0975 0.8542 -2.4691 8 8 2.4376 1.9206 -3.1374 9 8 2.6467 -0.4865 -2.6054 10 8 4.4959 0.8435 -3.0699 11 6 5.2294 -0.2530 -2.7433 12 6 6.0259 -0.2422 -1.6063 13 6 6.7727 -1.3562 -1.2732 14 6 6.7288 -2.4839 -2.0700 15 6 5.9338 -2.5002 -3.2088 16 8 5.8911 -3.6081 -3.9920 17 6 6.7302 -4.6148 -3.6749 18 1 7.3372 -4.5513 -2.7839 19 6 6.8139 -5.7312 -4.4928 20 7 6.0743 -5.8087 -5.5780 21 14 7.9771 -7.1254 -4.0537 22 1 7.6068 -7.6797 -2.7267 23 1 7.8792 -8.1937 -5.0806 24 1 9.3694 -6.6115 -4.0045 25 6 5.1831 -1.3821 -3.5451 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 2.6613 2.7671 1.4423 30 1 1.2568 1.8016 1.9562 31 1 2.8828 1.0776 1.9563 32 1 3.9931 0.5052 -0.2616 33 1 3.8427 2.2369 -0.6444 34 1 6.0620 0.6378 -0.9813 35 1 7.3913 -1.3455 -0.3880 36 1 7.3131 -3.3534 -1.8073 37 1 6.1326 -6.5899 -6.1499 38 1 4.5605 -1.3939 -4.4276 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841565821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:38 Heat of formation + Delta-G solvation = -172.095163 kcal Electronic energy + Delta-G solvation = -24799.320453 eV Core-core repulsion = 20928.308706 eV Total energy + Delta-G solvation = -3871.011748 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08666 -40.38486 -39.50410 -38.38557 -37.66491 -37.23567 -34.34885 -34.04961 -31.67861 -30.57352 -28.89814 -27.57101 -27.41812 -24.56929 -23.67140 -22.73319 -21.68374 -20.11194 -19.26265 -19.08224 -18.47622 -18.12266 -17.68810 -17.02352 -16.68375 -16.41376 -16.18189 -15.92678 -15.81858 -15.63352 -15.11873 -14.59616 -14.30384 -14.10631 -13.91087 -13.81514 -13.67687 -13.48498 -13.34802 -13.26167 -13.22039 -13.00677 -12.94643 -12.52744 -12.49142 -12.34845 -12.15387 -11.90686 -11.78800 -11.36299 -10.83737 -10.72770 -9.93443 -9.23942 -8.49197 -6.19838 -1.07572 0.19292 0.47760 1.03794 1.38091 1.49241 1.55336 2.17039 2.45636 2.59885 2.61677 2.94373 3.07843 3.28787 3.40966 3.74822 3.84471 3.95813 4.10980 4.16062 4.18822 4.21711 4.36601 4.47856 4.52348 4.55526 4.77334 4.79963 4.85484 4.93147 5.00748 5.08881 5.16908 5.29130 5.44134 5.53249 5.94362 5.96020 6.07204 6.93466 7.69079 8.73556 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.003490 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.605953 B = 8022.025617 C = 8084.655157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.409 6.409 3 C 0.081 3.919 4 H 0.085 0.915 5 C -0.160 4.160 6 C -0.626 4.626 7 S 2.579 3.421 8 O -0.969 6.969 9 O -0.975 6.975 10 O -0.669 6.669 11 C 0.098 3.902 12 C -0.195 4.195 13 C -0.039 4.039 14 C -0.220 4.220 15 C 0.130 3.870 16 O -0.226 6.226 17 C -0.419 4.419 18 H 0.116 0.884 19 C -0.024 4.024 20 N -0.920 5.920 21 Si 1.025 2.975 22 H -0.253 1.253 23 H -0.277 1.277 24 H -0.252 1.252 25 C -0.195 4.195 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.195 0.805 34 H 0.185 0.815 35 H 0.185 0.815 36 H 0.143 0.857 37 H 0.274 0.726 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.819 15.269 18.139 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.329 6.329 3 C 0.022 3.978 4 H 0.103 0.897 5 C -0.219 4.219 6 C -0.756 4.756 7 S 2.680 3.320 8 O -0.968 6.968 9 O -0.973 6.973 10 O -0.628 6.628 11 C 0.057 3.943 12 C -0.216 4.216 13 C -0.057 4.057 14 C -0.240 4.240 15 C 0.079 3.921 16 O -0.132 6.132 17 C -0.494 4.494 18 H 0.134 0.866 19 C -0.222 4.222 20 N -0.557 5.557 21 Si 0.843 3.157 22 H -0.177 1.177 23 H -0.201 1.201 24 H -0.176 1.176 25 C -0.217 4.217 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.212 0.788 34 H 0.202 0.798 35 H 0.202 0.798 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.179 14.923 16.960 22.813 hybrid contribution -0.160 -0.454 -0.433 0.647 sum -3.339 14.470 16.527 22.219 Atomic orbital electron populations 1.23108 0.79227 1.04289 1.01426 1.88050 1.21811 1.27687 1.95357 1.22016 0.90749 0.85678 0.99387 0.89732 1.22210 1.03843 1.03103 0.92707 1.30853 1.07811 1.16548 1.20418 1.05741 0.73138 0.73802 0.79316 1.93557 1.71820 1.57940 1.73445 1.93661 1.79733 1.37950 1.85981 1.85592 1.47879 1.49388 1.79985 1.17726 0.97638 0.81645 0.97266 1.21413 1.00794 1.02398 0.96966 1.21235 0.96033 0.89682 0.98760 1.21647 1.03872 1.02268 0.96239 1.19446 0.94186 0.86867 0.91641 1.83973 1.56491 1.22321 1.50409 1.21990 1.20494 0.95656 1.11272 0.86640 1.26759 0.99624 1.01203 0.94582 1.70208 1.40176 1.30921 1.14444 0.84562 0.77342 0.75078 0.78683 1.17706 1.20138 1.17578 1.20254 1.05503 0.92781 1.03133 0.90798 0.93790 0.88865 0.88708 0.90767 0.91044 0.81707 0.78754 0.79825 0.79809 0.83912 0.91700 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.41 -9.98 9.68 -148.05 -1.43 -11.41 16 3 C 0.08 1.43 2.71 30.59 0.08 1.52 16 4 H 0.08 1.31 7.79 -2.39 -0.02 1.29 16 5 C -0.16 -1.73 9.53 71.98 0.69 -1.04 16 6 C -0.63 -11.19 5.15 71.98 0.37 -10.82 16 7 S 2.58 81.82 5.02 -56.49 -0.28 81.54 16 8 O -0.97 -34.41 18.09 -118.57 -2.15 -36.55 16 9 O -0.97 -40.32 15.79 -117.81 -1.86 -42.18 16 10 O -0.67 -22.78 10.05 -61.57 -0.62 -23.39 16 11 C 0.10 3.63 4.80 22.49 0.11 3.74 16 12 C -0.20 -5.25 8.46 22.40 0.19 -5.06 16 13 C -0.04 -1.08 10.03 22.24 0.22 -0.86 16 14 C -0.22 -8.58 9.17 22.41 0.21 -8.38 16 15 C 0.13 6.50 6.64 22.56 0.15 6.65 16 16 O -0.23 -13.70 9.76 -22.79 -0.22 -13.92 16 17 C -0.42 -23.68 9.49 67.92 0.64 -23.04 16 18 H 0.12 5.67 5.20 -2.91 -0.02 5.66 16 19 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 20 N -0.92 -56.73 13.67 21.61 0.30 -56.44 16 21 Si 1.03 41.38 29.55 68.60 2.03 43.41 16 22 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 25 C -0.19 -9.22 8.99 22.48 0.20 -9.02 16 26 H 0.07 0.91 7.87 -2.39 -0.02 0.89 16 27 H 0.04 0.80 8.09 -2.38 -0.02 0.78 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.68 7.87 -2.39 -0.02 0.66 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.17 2.62 6.60 -2.39 -0.02 2.61 16 33 H 0.20 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.18 2.75 7.49 -2.91 -0.02 2.73 16 35 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.14 5.34 5.63 -2.91 -0.02 5.32 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.10 5.34 8.06 -2.91 -0.02 5.31 16 Total: -1.00 -86.05 337.74 1.40 -84.65 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.08 Total: 19.95 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 4.55 Total: -45.65 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.30 Total: -56.44 kcal Atomic # 8 Polarization: -121.18 SS G_CDS: -6.28 Total: -127.46 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 81.82 SS G_CDS: -0.28 Total: 81.54 kcal Total: -86.05 1.40 -84.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841565821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.443 kcal (2) G-P(sol) polarization free energy of solvation -86.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds