Wall clock time and date at job start Tue Mar 31 2020 11:01:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42898 * 113.99948 * 2 1
4 4 H 1.09002 * 109.46990 * 329.99113 * 3 2 1
5 5 C 1.52989 * 109.47647 * 89.99378 * 3 2 1
6 6 C 1.53002 * 109.46804 * 209.99771 * 3 2 1
7 7 S 1.81406 * 109.47338 * 64.99739 * 6 3 2
8 8 O 1.42102 * 110.54077 * 68.37380 * 7 6 3
9 9 O 1.42100 * 110.54012 * 291.62097 * 7 6 3
10 10 O 1.52202 * 104.44758 * 179.97438 * 7 6 3
11 11 C 1.35904 * 113.99732 * 75.00229 * 10 7 6
12 12 C 1.38827 * 120.01699 * 269.97476 * 11 10 7
13 13 C 1.38189 * 120.07975 * 180.02562 * 12 11 10
14 14 C 1.38149 * 120.12386 * 359.97438 * 13 12 11
15 15 C 1.38898 * 120.04054 * 0.03975 * 14 13 12
16 16 O 1.35749 * 120.03866 * 179.97438 * 15 14 13
17 17 C 1.34836 * 117.00488 * 354.39630 * 16 15 14
18 18 H 1.07999 * 119.99235 * 5.04658 * 17 16 15
19 19 C 1.38653 * 119.99938 * 185.05439 * 17 16 15
20 20 N 1.31556 * 120.00414 * 359.97438 * 19 17 16
21 21 Si 1.86798 * 119.99378 * 179.97438 * 19 17 16
22 22 H 1.48501 * 109.47328 * 59.99810 * 21 19 17
23 23 H 1.48504 * 109.47112 * 179.97438 * 21 19 17
24 24 H 1.48498 * 109.47251 * 299.99551 * 21 19 17
25 25 C 1.38564 * 120.02268 * 89.99553 * 11 10 7
26 26 H 1.09000 * 109.47290 * 300.00539 * 1 2 3
27 27 H 1.09004 * 109.46624 * 60.00779 * 1 2 3
28 28 H 1.08998 * 109.46859 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47470 * 179.97438 * 5 3 2
30 30 H 1.09001 * 109.47547 * 300.00450 * 5 3 2
31 31 H 1.09002 * 109.47141 * 59.99828 * 5 3 2
32 32 H 1.08995 * 109.47272 * 304.99206 * 6 3 2
33 33 H 1.09005 * 109.47172 * 184.99327 * 6 3 2
34 34 H 1.08001 * 119.96166 * 0.02562 * 12 11 10
35 35 H 1.07999 * 119.93893 * 180.02562 * 13 12 11
36 36 H 1.07999 * 119.98219 * 180.02562 * 14 13 12
37 37 H 0.96994 * 120.00171 * 180.02562 * 20 19 17
38 38 H 1.08005 * 120.06149 * 359.70298 * 25 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3450 1.9993 -0.5140
5 6 2.2176 1.7715 1.4423
6 6 3.3589 1.2632 -0.7212
7 16 3.0975 0.8542 -2.4691
8 8 2.4376 1.9206 -3.1374
9 8 2.6467 -0.4865 -2.6054
10 8 4.4959 0.8435 -3.0699
11 6 5.2294 -0.2530 -2.7433
12 6 6.0259 -0.2422 -1.6063
13 6 6.7727 -1.3562 -1.2732
14 6 6.7288 -2.4839 -2.0700
15 6 5.9338 -2.5002 -3.2088
16 8 5.8911 -3.6081 -3.9920
17 6 6.7302 -4.6148 -3.6749
18 1 7.3372 -4.5513 -2.7839
19 6 6.8139 -5.7312 -4.4928
20 7 6.0743 -5.8087 -5.5780
21 14 7.9771 -7.1254 -4.0537
22 1 7.6068 -7.6797 -2.7267
23 1 7.8792 -8.1937 -5.0806
24 1 9.3694 -6.6115 -4.0045
25 6 5.1831 -1.3821 -3.5451
26 1 -0.3634 0.5139 0.8899
27 1 -0.3633 0.5137 -0.8901
28 1 -0.3633 -1.0277 0.0005
29 1 2.6613 2.7671 1.4423
30 1 1.2568 1.8016 1.9562
31 1 2.8828 1.0776 1.9563
32 1 3.9931 0.5052 -0.2616
33 1 3.8427 2.2369 -0.6444
34 1 6.0620 0.6378 -0.9813
35 1 7.3913 -1.3455 -0.3880
36 1 7.3131 -3.3534 -1.8073
37 1 6.1326 -6.5899 -6.1499
38 1 4.5605 -1.3939 -4.4276
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000841565821.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:38
Heat of formation + Delta-G solvation = -172.095163 kcal
Electronic energy + Delta-G solvation = -24799.320453 eV
Core-core repulsion = 20928.308706 eV
Total energy + Delta-G solvation = -3871.011748 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.090 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.08666 -40.38486 -39.50410 -38.38557 -37.66491 -37.23567 -34.34885 -34.04961
-31.67861 -30.57352 -28.89814 -27.57101 -27.41812 -24.56929 -23.67140 -22.73319
-21.68374 -20.11194 -19.26265 -19.08224 -18.47622 -18.12266 -17.68810 -17.02352
-16.68375 -16.41376 -16.18189 -15.92678 -15.81858 -15.63352 -15.11873 -14.59616
-14.30384 -14.10631 -13.91087 -13.81514 -13.67687 -13.48498 -13.34802 -13.26167
-13.22039 -13.00677 -12.94643 -12.52744 -12.49142 -12.34845 -12.15387 -11.90686
-11.78800 -11.36299 -10.83737 -10.72770 -9.93443 -9.23942 -8.49197 -6.19838
-1.07572 0.19292 0.47760 1.03794 1.38091 1.49241 1.55336 2.17039
2.45636 2.59885 2.61677 2.94373 3.07843 3.28787 3.40966 3.74822
3.84471 3.95813 4.10980 4.16062 4.18822 4.21711 4.36601 4.47856
4.52348 4.55526 4.77334 4.79963 4.85484 4.93147 5.00748 5.08881
5.16908 5.29130 5.44134 5.53249 5.94362 5.96020 6.07204 6.93466
7.69079 8.73556
Molecular weight = 316.09amu
Principal moments of inertia in cm(-1)
A = 0.020604 B = 0.003490 C = 0.003463
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1358.605953 B = 8022.025617 C = 8084.655157
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 O -0.409 6.409
3 C 0.081 3.919
4 H 0.085 0.915
5 C -0.160 4.160
6 C -0.626 4.626
7 S 2.579 3.421
8 O -0.969 6.969
9 O -0.975 6.975
10 O -0.669 6.669
11 C 0.098 3.902
12 C -0.195 4.195
13 C -0.039 4.039
14 C -0.220 4.220
15 C 0.130 3.870
16 O -0.226 6.226
17 C -0.419 4.419
18 H 0.116 0.884
19 C -0.024 4.024
20 N -0.920 5.920
21 Si 1.025 2.975
22 H -0.253 1.253
23 H -0.277 1.277
24 H -0.252 1.252
25 C -0.195 4.195
26 H 0.074 0.926
27 H 0.043 0.957
28 H 0.093 0.907
29 H 0.094 0.906
30 H 0.073 0.927
31 H 0.071 0.929
32 H 0.165 0.835
33 H 0.195 0.805
34 H 0.185 0.815
35 H 0.185 0.815
36 H 0.143 0.857
37 H 0.274 0.726
38 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.819 15.269 18.139 23.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.329 6.329
3 C 0.022 3.978
4 H 0.103 0.897
5 C -0.219 4.219
6 C -0.756 4.756
7 S 2.680 3.320
8 O -0.968 6.968
9 O -0.973 6.973
10 O -0.628 6.628
11 C 0.057 3.943
12 C -0.216 4.216
13 C -0.057 4.057
14 C -0.240 4.240
15 C 0.079 3.921
16 O -0.132 6.132
17 C -0.494 4.494
18 H 0.134 0.866
19 C -0.222 4.222
20 N -0.557 5.557
21 Si 0.843 3.157
22 H -0.177 1.177
23 H -0.201 1.201
24 H -0.176 1.176
25 C -0.217 4.217
26 H 0.092 0.908
27 H 0.062 0.938
28 H 0.111 0.889
29 H 0.113 0.887
30 H 0.092 0.908
31 H 0.090 0.910
32 H 0.183 0.817
33 H 0.212 0.788
34 H 0.202 0.798
35 H 0.202 0.798
36 H 0.161 0.839
37 H 0.083 0.917
38 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -3.179 14.923 16.960 22.813
hybrid contribution -0.160 -0.454 -0.433 0.647
sum -3.339 14.470 16.527 22.219
Atomic orbital electron populations
1.23108 0.79227 1.04289 1.01426 1.88050 1.21811 1.27687 1.95357
1.22016 0.90749 0.85678 0.99387 0.89732 1.22210 1.03843 1.03103
0.92707 1.30853 1.07811 1.16548 1.20418 1.05741 0.73138 0.73802
0.79316 1.93557 1.71820 1.57940 1.73445 1.93661 1.79733 1.37950
1.85981 1.85592 1.47879 1.49388 1.79985 1.17726 0.97638 0.81645
0.97266 1.21413 1.00794 1.02398 0.96966 1.21235 0.96033 0.89682
0.98760 1.21647 1.03872 1.02268 0.96239 1.19446 0.94186 0.86867
0.91641 1.83973 1.56491 1.22321 1.50409 1.21990 1.20494 0.95656
1.11272 0.86640 1.26759 0.99624 1.01203 0.94582 1.70208 1.40176
1.30921 1.14444 0.84562 0.77342 0.75078 0.78683 1.17706 1.20138
1.17578 1.20254 1.05503 0.92781 1.03133 0.90798 0.93790 0.88865
0.88708 0.90767 0.91044 0.81707 0.78754 0.79825 0.79809 0.83912
0.91700 0.87740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.28 10.82 113.37 1.23 1.51 16
2 O -0.41 -9.98 9.68 -148.05 -1.43 -11.41 16
3 C 0.08 1.43 2.71 30.59 0.08 1.52 16
4 H 0.08 1.31 7.79 -2.39 -0.02 1.29 16
5 C -0.16 -1.73 9.53 71.98 0.69 -1.04 16
6 C -0.63 -11.19 5.15 71.98 0.37 -10.82 16
7 S 2.58 81.82 5.02 -56.49 -0.28 81.54 16
8 O -0.97 -34.41 18.09 -118.57 -2.15 -36.55 16
9 O -0.97 -40.32 15.79 -117.81 -1.86 -42.18 16
10 O -0.67 -22.78 10.05 -61.57 -0.62 -23.39 16
11 C 0.10 3.63 4.80 22.49 0.11 3.74 16
12 C -0.20 -5.25 8.46 22.40 0.19 -5.06 16
13 C -0.04 -1.08 10.03 22.24 0.22 -0.86 16
14 C -0.22 -8.58 9.17 22.41 0.21 -8.38 16
15 C 0.13 6.50 6.64 22.56 0.15 6.65 16
16 O -0.23 -13.70 9.76 -22.79 -0.22 -13.92 16
17 C -0.42 -23.68 9.49 67.92 0.64 -23.04 16
18 H 0.12 5.67 5.20 -2.91 -0.02 5.66 16
19 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16
20 N -0.92 -56.73 13.67 21.61 0.30 -56.44 16
21 Si 1.03 41.38 29.55 68.60 2.03 43.41 16
22 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16
23 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16
24 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16
25 C -0.19 -9.22 8.99 22.48 0.20 -9.02 16
26 H 0.07 0.91 7.87 -2.39 -0.02 0.89 16
27 H 0.04 0.80 8.09 -2.38 -0.02 0.78 16
28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16
30 H 0.07 0.68 7.87 -2.39 -0.02 0.66 16
31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
32 H 0.17 2.62 6.60 -2.39 -0.02 2.61 16
33 H 0.20 1.62 8.14 -2.39 -0.02 1.60 16
34 H 0.18 2.75 7.49 -2.91 -0.02 2.73 16
35 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16
36 H 0.14 5.34 5.63 -2.91 -0.02 5.32 16
37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16
38 H 0.10 5.34 8.06 -2.91 -0.02 5.31 16
Total: -1.00 -86.05 337.74 1.40 -84.65
By element:
Atomic # 1 Polarization: 18.87 SS G_CDS: 1.08 Total: 19.95 kcal
Atomic # 6 Polarization: -50.21 SS G_CDS: 4.55 Total: -45.65 kcal
Atomic # 7 Polarization: -56.73 SS G_CDS: 0.30 Total: -56.44 kcal
Atomic # 8 Polarization: -121.18 SS G_CDS: -6.28 Total: -127.46 kcal
Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal
Atomic # 16 Polarization: 81.82 SS G_CDS: -0.28 Total: 81.54 kcal
Total: -86.05 1.40 -84.65 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000841565821.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.443 kcal
(2) G-P(sol) polarization free energy of solvation -86.048 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.491 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.652 kcal
(6) G-S(sol) free energy of system = (1) + (5) -172.095 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds