Wall clock time and date at job start Tue Mar 31 2020 11:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00229 * 2 1 4 4 H 1.08999 * 109.46896 * 30.00516 * 3 2 1 5 5 C 1.53001 * 109.47165 * 270.00046 * 3 2 1 6 6 C 1.53008 * 109.46939 * 150.00160 * 3 2 1 7 7 S 1.81397 * 109.47093 * 300.00056 * 6 3 2 8 8 O 1.42103 * 110.54253 * 291.62425 * 7 6 3 9 9 O 1.42101 * 110.54081 * 68.37868 * 7 6 3 10 10 O 1.52198 * 104.44764 * 180.02562 * 7 6 3 11 11 C 1.35899 * 114.00394 * 74.99856 * 10 7 6 12 12 C 1.38820 * 120.02126 * 269.72855 * 11 10 7 13 13 C 1.38190 * 120.08075 * 179.71570 * 12 11 10 14 14 C 1.38155 * 120.12251 * 0.55676 * 13 12 11 15 15 C 1.38895 * 120.04146 * 359.71803 * 14 13 12 16 16 O 1.35753 * 120.04306 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99701 * 354.48404 * 16 15 14 18 18 H 1.07992 * 119.99978 * 5.05777 * 17 16 15 19 19 C 1.38655 * 119.99374 * 185.06052 * 17 16 15 20 20 N 1.31552 * 120.00677 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99382 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47485 * 60.00031 * 21 19 17 23 23 H 1.48501 * 109.47079 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47356 * 299.99574 * 21 19 17 25 25 C 1.38570 * 120.01997 * 89.99527 * 11 10 7 26 26 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46815 * 300.00204 * 1 2 3 28 28 H 1.09005 * 109.46958 * 59.99495 * 1 2 3 29 29 H 1.09000 * 109.46735 * 180.02562 * 5 3 2 30 30 H 1.08994 * 109.47155 * 299.99881 * 5 3 2 31 31 H 1.09004 * 109.46953 * 60.00154 * 5 3 2 32 32 H 1.08999 * 109.47036 * 60.00441 * 6 3 2 33 33 H 1.09000 * 109.46993 * 179.97438 * 6 3 2 34 34 H 1.07997 * 119.96150 * 359.97438 * 12 11 10 35 35 H 1.07996 * 119.94261 * 180.25166 * 13 12 11 36 36 H 1.08003 * 119.97823 * 179.69986 * 14 13 12 37 37 H 0.96993 * 120.00455 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.05857 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3590 1.2631 0.7213 7 16 3.1130 0.7107 2.4315 8 8 2.4093 1.6947 3.1770 9 8 2.7177 -0.6539 2.4627 10 8 4.5101 0.7111 3.0353 11 6 4.9886 1.9506 3.3207 12 6 5.7140 2.6517 2.3671 13 6 6.1962 3.9146 2.6540 14 6 5.9678 4.4787 3.8943 15 6 5.2475 3.7795 4.8542 16 8 5.0235 4.3336 6.0731 17 6 5.6227 5.5142 6.3282 18 1 6.1805 6.0156 5.5513 19 6 5.5227 6.0842 7.5882 20 7 4.8436 5.4731 8.5348 21 14 6.3522 7.7202 7.9414 22 1 5.8045 8.7594 7.0330 23 1 6.0960 8.1110 9.3510 24 1 7.8151 7.5913 7.7212 25 6 4.7575 2.5133 4.5658 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.6615 2.7669 -1.4424 30 1 2.8829 1.0775 -1.9563 31 1 1.2568 1.8015 -1.9563 32 1 4.0242 0.5692 0.2073 33 1 3.8026 2.2588 0.7209 34 1 5.8983 2.2113 1.3984 35 1 6.7568 4.4596 1.9090 36 1 6.3498 5.4639 4.1176 37 1 4.7734 5.8721 9.4160 38 1 4.1966 1.9677 5.3103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841565826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:41 Heat of formation + Delta-G solvation = -146.520361 kcal Electronic energy + Delta-G solvation = -24668.152271 eV Core-core repulsion = 20798.249530 eV Total energy + Delta-G solvation = -3869.902741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64048 -38.78706 -38.64463 -36.97111 -36.10069 -35.82442 -33.23979 -32.47974 -30.13395 -29.05273 -28.09593 -26.80579 -25.57677 -23.06708 -22.35100 -21.66313 -20.24029 -18.63034 -17.66669 -17.62603 -17.22433 -17.14551 -16.25183 -15.63467 -15.42888 -15.31830 -14.78852 -14.75872 -14.35275 -13.85085 -13.58429 -13.54972 -13.11005 -13.06610 -12.82917 -12.67131 -12.61728 -12.27375 -11.94626 -11.86044 -11.84181 -11.80233 -11.41122 -11.39172 -11.20075 -10.99410 -10.87880 -10.74766 -10.59356 -9.95911 -9.61106 -9.02444 -8.44578 -7.58099 -6.61143 -4.20682 0.22252 1.68205 1.97224 2.38534 3.04695 3.05499 3.09451 3.29869 3.73914 3.81983 4.09560 4.19943 4.33698 4.56746 4.79705 4.81829 4.95143 5.02665 5.06123 5.14667 5.24220 5.28024 5.34997 5.44452 5.49257 5.57368 5.61041 5.78234 5.81167 5.98662 6.34259 6.52639 6.65705 6.75496 6.78154 7.02519 7.15789 7.43235 7.80854 8.81963 9.46516 10.55392 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.003275 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.073746 B = 8548.607509 C = 8777.088195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.383 6.383 3 C 0.095 3.905 4 H 0.079 0.921 5 C -0.165 4.165 6 C -0.657 4.657 7 S 2.598 3.402 8 O -0.945 6.945 9 O -0.922 6.922 10 O -0.662 6.662 11 C 0.098 3.902 12 C -0.234 4.234 13 C -0.054 4.054 14 C -0.222 4.222 15 C 0.164 3.836 16 O -0.162 6.162 17 C -0.397 4.397 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.851 5.851 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.156 4.156 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.275 0.725 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 -4.050 -17.461 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C 0.036 3.964 4 H 0.097 0.903 5 C -0.223 4.223 6 C -0.782 4.782 7 S 2.692 3.308 8 O -0.943 6.943 9 O -0.920 6.920 10 O -0.622 6.622 11 C 0.057 3.943 12 C -0.255 4.255 13 C -0.073 4.073 14 C -0.242 4.242 15 C 0.108 3.892 16 O -0.063 6.063 17 C -0.472 4.472 18 H 0.114 0.886 19 C -0.164 4.164 20 N -0.484 5.484 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.178 4.178 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.220 -4.678 -16.370 17.327 hybrid contribution 0.440 1.067 -0.558 1.282 sum -2.780 -3.611 -16.928 17.530 Atomic orbital electron populations 1.22935 0.80177 1.03661 1.00424 1.88038 1.20536 1.26489 1.95133 1.21676 0.91363 0.85920 0.97404 0.90276 1.22201 1.02788 1.02152 0.95153 1.31028 1.05886 1.14643 1.26614 1.05462 0.73645 0.75050 0.76679 1.93690 1.72142 1.62584 1.65918 1.93612 1.78988 1.33293 1.86146 1.85653 1.55699 1.38266 1.82574 1.17548 1.02037 0.79157 0.95554 1.20639 1.07870 0.97310 0.99708 1.20571 0.97121 0.93465 0.96099 1.21353 1.05993 1.02689 0.94158 1.18929 0.92309 0.90816 0.87142 1.83994 1.61016 1.35139 1.26196 1.21377 1.32569 0.95159 0.98110 0.88595 1.25381 0.96831 0.99930 0.94261 1.70027 1.36662 1.38339 1.03371 0.85710 0.79358 0.79742 0.78229 1.19283 1.20118 1.19293 1.20176 1.06064 0.95187 0.96368 0.88789 0.93403 0.93556 0.90939 0.91279 0.91819 0.83824 0.83079 0.85934 0.85769 0.84443 0.91529 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 101.05 1.09 1.32 16 2 O -0.38 -4.72 9.39 -41.98 -0.39 -5.12 16 3 C 0.10 1.03 2.77 -26.73 -0.07 0.96 16 4 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 5 C -0.16 -1.34 9.53 37.16 0.35 -0.99 16 6 C -0.66 -7.49 5.20 37.16 0.19 -7.30 16 7 S 2.60 42.49 4.96 -107.50 -0.53 41.95 16 8 O -0.94 -18.20 16.26 -67.04 -1.09 -19.29 16 9 O -0.92 -17.15 17.43 -68.55 -1.19 -18.34 16 10 O -0.66 -11.65 10.05 -51.75 -0.52 -12.17 16 11 C 0.10 1.85 4.79 -39.24 -0.19 1.66 16 12 C -0.23 -3.68 8.46 -39.38 -0.33 -4.01 16 13 C -0.05 -0.86 10.03 -39.63 -0.40 -1.26 16 14 C -0.22 -4.35 9.17 -39.37 -0.36 -4.71 16 15 C 0.16 3.82 6.64 -39.13 -0.26 3.56 16 16 O -0.16 -4.45 9.76 0.04 0.00 -4.45 16 17 C -0.40 -10.48 9.49 30.89 0.29 -10.19 16 18 H 0.10 2.26 5.20 -52.49 -0.27 1.99 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.85 -24.08 13.67 55.48 0.76 -23.32 16 21 Si 0.95 19.36 29.55 -169.99 -5.02 14.34 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 25 C -0.16 -3.43 8.99 -39.25 -0.35 -3.78 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.14 1.35 8.14 -51.92 -0.42 0.93 16 33 H 0.15 1.46 6.62 -51.92 -0.34 1.12 16 34 H 0.12 1.44 7.52 -52.49 -0.39 1.05 16 35 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.14 2.60 5.63 -52.48 -0.30 2.30 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.13 2.98 8.06 -52.48 -0.42 2.56 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -33.66 337.34 -7.66 -41.32 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.62 Total: 3.73 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -0.13 Total: -23.73 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.76 Total: -23.32 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -3.20 Total: -59.36 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: 42.49 SS G_CDS: -0.53 Total: 41.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.66 -7.66 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841565826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.198 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds