Wall clock time and date at job start Tue Mar 31 2020 11:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00229 * 2 1 4 4 H 1.08999 * 109.46896 * 30.00516 * 3 2 1 5 5 C 1.53001 * 109.47165 * 270.00046 * 3 2 1 6 6 C 1.53008 * 109.46939 * 150.00160 * 3 2 1 7 7 S 1.81397 * 109.47093 * 300.00056 * 6 3 2 8 8 O 1.42103 * 110.54253 * 291.62425 * 7 6 3 9 9 O 1.42101 * 110.54081 * 68.37868 * 7 6 3 10 10 O 1.52198 * 104.44764 * 180.02562 * 7 6 3 11 11 C 1.35899 * 114.00394 * 74.99856 * 10 7 6 12 12 C 1.38820 * 120.02126 * 269.72855 * 11 10 7 13 13 C 1.38190 * 120.08075 * 179.71570 * 12 11 10 14 14 C 1.38155 * 120.12251 * 0.55676 * 13 12 11 15 15 C 1.38895 * 120.04146 * 359.71803 * 14 13 12 16 16 O 1.35753 * 120.04306 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99701 * 354.48404 * 16 15 14 18 18 H 1.07992 * 119.99978 * 5.05777 * 17 16 15 19 19 C 1.38655 * 119.99374 * 185.06052 * 17 16 15 20 20 N 1.31552 * 120.00677 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99382 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47485 * 60.00031 * 21 19 17 23 23 H 1.48501 * 109.47079 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47356 * 299.99574 * 21 19 17 25 25 C 1.38570 * 120.01997 * 89.99527 * 11 10 7 26 26 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46815 * 300.00204 * 1 2 3 28 28 H 1.09005 * 109.46958 * 59.99495 * 1 2 3 29 29 H 1.09000 * 109.46735 * 180.02562 * 5 3 2 30 30 H 1.08994 * 109.47155 * 299.99881 * 5 3 2 31 31 H 1.09004 * 109.46953 * 60.00154 * 5 3 2 32 32 H 1.08999 * 109.47036 * 60.00441 * 6 3 2 33 33 H 1.09000 * 109.46993 * 179.97438 * 6 3 2 34 34 H 1.07997 * 119.96150 * 359.97438 * 12 11 10 35 35 H 1.07996 * 119.94261 * 180.25166 * 13 12 11 36 36 H 1.08003 * 119.97823 * 179.69986 * 14 13 12 37 37 H 0.96993 * 120.00455 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.05857 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3590 1.2631 0.7213 7 16 3.1130 0.7107 2.4315 8 8 2.4093 1.6947 3.1770 9 8 2.7177 -0.6539 2.4627 10 8 4.5101 0.7111 3.0353 11 6 4.9886 1.9506 3.3207 12 6 5.7140 2.6517 2.3671 13 6 6.1962 3.9146 2.6540 14 6 5.9678 4.4787 3.8943 15 6 5.2475 3.7795 4.8542 16 8 5.0235 4.3336 6.0731 17 6 5.6227 5.5142 6.3282 18 1 6.1805 6.0156 5.5513 19 6 5.5227 6.0842 7.5882 20 7 4.8436 5.4731 8.5348 21 14 6.3522 7.7202 7.9414 22 1 5.8045 8.7594 7.0330 23 1 6.0960 8.1110 9.3510 24 1 7.8151 7.5913 7.7212 25 6 4.7575 2.5133 4.5658 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.6615 2.7669 -1.4424 30 1 2.8829 1.0775 -1.9563 31 1 1.2568 1.8015 -1.9563 32 1 4.0242 0.5692 0.2073 33 1 3.8026 2.2588 0.7209 34 1 5.8983 2.2113 1.3984 35 1 6.7568 4.4596 1.9090 36 1 6.3498 5.4639 4.1176 37 1 4.7734 5.8721 9.4160 38 1 4.1966 1.9677 5.3103 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841565826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:40 Heat of formation + Delta-G solvation = -172.170865 kcal Electronic energy + Delta-G solvation = -24669.264560 eV Core-core repulsion = 20798.249530 eV Total energy + Delta-G solvation = -3871.015030 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.090 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09678 -40.39376 -39.52367 -38.37134 -37.67850 -37.23297 -34.35270 -34.05716 -31.68206 -30.57539 -28.91090 -27.58063 -27.42041 -24.56584 -23.66660 -22.74166 -21.69052 -20.14030 -19.27486 -19.03214 -18.47352 -18.16037 -17.70975 -17.03051 -16.68295 -16.33763 -16.21294 -15.91924 -15.86985 -15.63737 -15.10233 -14.61967 -14.36663 -14.09146 -13.90164 -13.77651 -13.64943 -13.47664 -13.37784 -13.28805 -13.23840 -13.01474 -12.93973 -12.53242 -12.49566 -12.34109 -12.15730 -11.94918 -11.78437 -11.36465 -10.83932 -10.76195 -9.94330 -9.24999 -8.49472 -6.20195 -1.06641 0.18143 0.46792 1.02199 1.38328 1.49251 1.55467 2.16762 2.50449 2.54682 2.59207 2.92130 3.06840 3.32067 3.42190 3.74489 3.84204 3.97289 4.06905 4.16132 4.19899 4.22708 4.38074 4.46975 4.51809 4.54254 4.76863 4.78937 4.85087 4.92152 5.00582 5.08838 5.17186 5.27946 5.44082 5.52962 5.93991 5.95622 6.01783 6.93251 7.68769 8.73211 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.003275 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.073746 B = 8548.607509 C = 8777.088195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.408 6.408 3 C 0.080 3.920 4 H 0.080 0.920 5 C -0.160 4.160 6 C -0.624 4.624 7 S 2.582 3.418 8 O -0.988 6.988 9 O -0.956 6.956 10 O -0.670 6.670 11 C 0.095 3.905 12 C -0.196 4.196 13 C -0.037 4.037 14 C -0.220 4.220 15 C 0.131 3.869 16 O -0.226 6.226 17 C -0.418 4.418 18 H 0.118 0.882 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.025 2.975 22 H -0.252 1.252 23 H -0.278 1.278 24 H -0.252 1.252 25 C -0.197 4.197 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.144 0.856 37 H 0.274 0.726 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -2.780 -22.918 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.328 6.328 3 C 0.021 3.979 4 H 0.098 0.902 5 C -0.218 4.218 6 C -0.755 4.755 7 S 2.683 3.317 8 O -0.987 6.987 9 O -0.955 6.955 10 O -0.629 6.629 11 C 0.054 3.946 12 C -0.217 4.217 13 C -0.055 4.055 14 C -0.239 4.239 15 C 0.079 3.921 16 O -0.132 6.132 17 C -0.494 4.494 18 H 0.135 0.865 19 C -0.222 4.222 20 N -0.558 5.558 21 Si 0.843 3.157 22 H -0.176 1.176 23 H -0.203 1.203 24 H -0.176 1.176 25 C -0.218 4.218 26 H 0.119 0.881 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.194 0.806 33 H 0.198 0.802 34 H 0.202 0.798 35 H 0.204 0.796 36 H 0.162 0.838 37 H 0.083 0.917 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.138 -3.459 -21.827 22.129 hybrid contribution -0.245 0.395 0.693 0.834 sum -1.383 -3.064 -21.134 21.400 Atomic orbital electron populations 1.23146 0.79086 1.04585 1.01411 1.87997 1.21933 1.27518 1.95378 1.22005 0.90800 0.85694 0.99376 0.90162 1.22203 1.03885 1.03100 0.92628 1.30816 1.07718 1.16701 1.20227 1.05661 0.72898 0.74128 0.79046 1.93650 1.72985 1.63043 1.68986 1.93565 1.79257 1.35015 1.87617 1.85617 1.55932 1.37923 1.83468 1.17791 1.02134 0.79618 0.95046 1.21429 1.03168 0.96341 1.00727 1.21253 0.95632 0.93339 0.95256 1.21664 1.04578 1.02776 0.94929 1.19442 0.93835 0.91650 0.87151 1.83977 1.63915 1.36515 1.28798 1.21995 1.32935 0.95339 0.99087 0.86509 1.26758 0.97444 1.04218 0.93770 1.70205 1.40343 1.41131 1.04085 0.84564 0.78705 0.74441 0.77987 1.17585 1.20262 1.17625 1.20267 1.07802 0.95693 0.98082 0.88103 0.94076 0.90917 0.89119 0.90612 0.90747 0.80558 0.80154 0.79797 0.79615 0.83807 0.91703 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.82 113.37 1.23 1.46 16 2 O -0.41 -9.16 9.39 -142.52 -1.34 -10.50 16 3 C 0.08 1.45 2.77 30.60 0.08 1.53 16 4 H 0.08 1.41 7.79 -2.39 -0.02 1.39 16 5 C -0.16 -1.77 9.53 71.98 0.69 -1.08 16 6 C -0.62 -11.33 5.20 71.98 0.37 -10.96 16 7 S 2.58 82.90 4.96 -56.49 -0.28 82.62 16 8 O -0.99 -39.52 16.26 -118.57 -1.93 -41.45 16 9 O -0.96 -36.08 17.43 -117.13 -2.04 -38.12 16 10 O -0.67 -23.00 10.05 -61.51 -0.62 -23.62 16 11 C 0.10 3.44 4.79 22.49 0.11 3.55 16 12 C -0.20 -5.02 8.46 22.40 0.19 -4.83 16 13 C -0.04 -0.96 10.03 22.24 0.22 -0.73 16 14 C -0.22 -8.21 9.17 22.41 0.21 -8.00 16 15 C 0.13 6.37 6.64 22.56 0.15 6.52 16 16 O -0.23 -13.46 9.76 -22.78 -0.22 -13.68 16 17 C -0.42 -23.21 9.49 67.92 0.64 -22.57 16 18 H 0.12 5.59 5.20 -2.91 -0.02 5.57 16 19 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 20 N -0.92 -56.15 13.67 21.61 0.30 -55.86 16 21 Si 1.02 40.70 29.55 68.60 2.03 42.72 16 22 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 23 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 25 C -0.20 -9.12 8.99 22.48 0.20 -8.92 16 26 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 0.73 8.09 -2.38 -0.02 0.71 16 28 H 0.07 0.83 7.87 -2.38 -0.02 0.81 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.69 7.87 -2.39 -0.02 0.68 16 32 H 0.18 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.18 2.24 6.62 -2.39 -0.02 2.22 16 34 H 0.18 2.57 7.52 -2.91 -0.02 2.55 16 35 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.14 5.14 5.63 -2.91 -0.02 5.13 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.10 5.22 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -84.86 337.34 1.54 -83.32 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.08 Total: 19.46 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 4.56 Total: -44.88 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.30 Total: -55.86 kcal Atomic # 8 Polarization: -121.24 SS G_CDS: -6.15 Total: -127.38 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 82.90 SS G_CDS: -0.28 Total: 82.62 kcal Total: -84.86 1.54 -83.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841565826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.850 kcal (2) G-P(sol) polarization free energy of solvation -84.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds