Wall clock time and date at job start Tue Mar 31 2020 11:31:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86799 * 120.00040 * 2 1
4 4 H 1.48498 * 109.47332 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47219 * 300.00166 * 3 2 1
6 6 H 1.48501 * 109.47278 * 59.99899 * 3 2 1
7 7 C 1.37873 * 120.00210 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00216 * 179.97438 * 7 2 1
9 9 C 1.50700 * 119.99957 * 0.02562 * 7 2 1
10 10 H 1.08998 * 109.52850 * 60.07412 * 9 7 2
11 11 C 1.53042 * 109.49688 * 180.16038 * 9 7 2
12 12 C 1.53042 * 109.53544 * 181.31282 * 11 9 7
13 13 C 1.53630 * 109.24339 * 298.51055 * 12 11 9
14 14 N 1.46923 * 108.54276 * 54.85489 * 13 12 11
15 15 C 1.34772 * 120.62831 * 126.36940 * 14 13 12
16 16 O 1.21280 * 120.00552 * 3.27298 * 15 14 13
17 17 C 1.50707 * 120.00185 * 183.27417 * 15 14 13
18 18 F 1.39892 * 109.47246 * 75.51930 * 17 15 14
19 19 F 1.39898 * 109.46688 * 315.52244 * 17 15 14
20 20 C 1.50700 * 109.47465 * 195.52374 * 17 15 14
21 21 N 1.29028 * 124.91357 * 300.03775 * 20 17 15
22 22 C 1.31782 * 117.12343 * 179.67920 * 21 20 17
23 23 C 1.33640 * 114.50005 * 0.51999 * 22 21 20
24 24 S 1.70976 * 124.91781 * 119.99816 * 20 17 15
25 25 C 1.46927 * 118.73854 * 306.09759 * 14 13 12
26 26 H 0.96995 * 119.99719 * 359.97438 * 1 2 3
27 27 H 1.08994 * 109.46134 * 301.32691 * 11 9 7
28 28 H 1.08997 * 109.46258 * 61.31105 * 11 9 7
29 29 H 1.08997 * 109.49954 * 58.58226 * 12 11 9
30 30 H 1.09000 * 109.50190 * 178.64987 * 12 11 9
31 31 H 1.08997 * 109.73504 * 295.11842 * 13 12 11
32 32 H 1.08999 * 109.66573 * 174.54927 * 13 12 11
33 33 H 1.07997 * 122.75255 * 180.33814 * 22 21 20
34 34 H 1.07995 * 126.03936 * 179.78943 * 23 22 21
35 35 H 1.09005 * 109.58527 * 173.64810 * 25 14 13
36 36 H 1.09002 * 109.58663 * 294.06882 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8904 2.3964 -1.2124
6 1 1.8904 2.3965 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2511 -2.4991 0.0005
10 1 0.6254 -2.5586 -0.8900
11 6 2.2451 -3.6628 0.0052
12 6 1.4812 -4.9885 -0.0278
13 6 0.6029 -5.0982 1.2279
14 7 -0.2563 -3.9088 1.3025
15 6 -1.5930 -4.0337 1.4215
16 8 -2.0922 -5.1339 1.5278
17 6 -2.4674 -2.8063 1.4225
18 9 -2.5770 -2.3107 0.1190
19 9 -1.8986 -1.8293 2.2466
20 6 -3.8364 -3.1652 1.9402
21 7 -4.6235 -4.0362 1.4048
22 6 -5.7873 -4.2345 1.9903
23 6 -5.9980 -3.4814 3.0740
24 16 -4.5712 -2.4778 3.3226
25 6 0.3698 -2.5806 1.2509
26 1 -0.4849 0.8400 0.0004
27 1 2.8897 -3.5933 -0.8709
28 1 2.8536 -3.6170 0.9084
29 1 0.8534 -5.0246 -0.9181
30 1 2.1899 -5.8164 -0.0487
31 1 1.2340 -5.1494 2.1151
32 1 -0.0163 -5.9930 1.1653
33 1 -6.5127 -4.9452 1.6228
34 1 -6.8843 -3.4897 3.6910
35 1 -0.4034 -1.8137 1.2036
36 1 0.9822 -2.4306 2.1401
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000855257245.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:35
Heat of formation + Delta-G solvation = -87.138901 kcal
Electronic energy + Delta-G solvation = -25491.830431 eV
Core-core repulsion = 21545.707899 eV
Total energy + Delta-G solvation = -3946.122532 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.080 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-50.59601 -48.51359 -41.26869 -40.63204 -38.59208 -35.14945 -33.78208 -32.60367
-31.63913 -29.27699 -27.10186 -26.67054 -25.17693 -23.60776 -22.36240 -21.24147
-20.45984 -20.08462 -18.89260 -18.61806 -18.26016 -17.93212 -17.12097 -16.50647
-16.16307 -15.99486 -15.84622 -15.50682 -15.40456 -15.11197 -14.79610 -14.66195
-14.59426 -14.47537 -14.28234 -13.84728 -13.57433 -13.51319 -12.87214 -12.64913
-12.52984 -12.30045 -12.20622 -11.87315 -11.70170 -11.44273 -10.95328 -10.91316
-10.72600 -10.60145 -10.48480 -10.18618 -9.68207 -8.07547 -6.21757 -0.64308
0.01016 0.56186 0.92035 1.41873 1.46135 1.48356 1.58183 1.70804
2.13551 2.45357 2.56021 3.15607 3.27207 3.38545 3.80448 4.01711
4.07400 4.24249 4.29108 4.38710 4.51897 4.60329 4.73365 4.79059
5.02273 5.03282 5.09868 5.19525 5.24104 5.45312 5.58209 5.83217
5.95028 6.10511 6.35091 6.52467 6.64491 6.88145 7.47263 8.96943
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.016145 B = 0.005480 C = 0.004381
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1733.867863 B = 5107.966607 C = 6390.420930
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.906 5.906
2 C 0.019 3.981
3 Si 0.954 3.046
4 H -0.266 1.266
5 H -0.286 1.286
6 H -0.280 1.280
7 C -0.533 4.533
8 H 0.061 0.939
9 C 0.035 3.965
10 H -0.009 1.009
11 C -0.106 4.106
12 C -0.124 4.124
13 C 0.106 3.894
14 N -0.584 5.584
15 C 0.486 3.514
16 O -0.525 6.525
17 C 0.374 3.626
18 F -0.170 7.170
19 F -0.165 7.165
20 C -0.073 4.073
21 N -0.446 5.446
22 C 0.014 3.986
23 C -0.212 4.212
24 S 0.218 5.782
25 C 0.086 3.914
26 H 0.262 0.738
27 H 0.056 0.944
28 H 0.063 0.937
29 H 0.046 0.954
30 H 0.105 0.895
31 H 0.092 0.908
32 H 0.088 0.912
33 H 0.214 0.786
34 H 0.235 0.765
35 H 0.118 0.882
36 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.899 -6.691 8.485 13.999
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.181 4.181
3 Si 0.780 3.220
4 H -0.190 1.190
5 H -0.212 1.212
6 H -0.206 1.206
7 C -0.572 4.572
8 H 0.079 0.921
9 C 0.016 3.984
10 H 0.009 0.991
11 C -0.144 4.144
12 C -0.162 4.162
13 C -0.015 4.015
14 N -0.314 5.314
15 C 0.266 3.734
16 O -0.403 6.403
17 C 0.330 3.670
18 F -0.151 7.151
19 F -0.146 7.146
20 C -0.349 4.349
21 N -0.162 5.162
22 C -0.137 4.137
23 C -0.351 4.351
24 S 0.471 5.529
25 C -0.035 4.035
26 H 0.071 0.929
27 H 0.074 0.926
28 H 0.081 0.919
29 H 0.065 0.935
30 H 0.123 0.877
31 H 0.110 0.890
32 H 0.106 0.894
33 H 0.230 0.770
34 H 0.251 0.749
35 H 0.135 0.865
36 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -8.756 -6.634 8.770 14.057
hybrid contribution -0.113 0.766 -0.871 1.165
sum -8.869 -5.868 7.899 13.248
Atomic orbital electron populations
1.69971 1.06930 1.27310 1.50203 1.25739 0.95636 1.02289 0.94459
0.85571 0.79175 0.79883 0.77395 1.19048 1.21234 1.20571 1.21418
0.93253 0.91034 1.51485 0.92065 1.18944 0.93205 0.94020 0.92231
0.99088 1.21549 0.97785 0.93625 1.01429 1.21980 0.98705 0.99081
0.96435 1.22018 0.92832 0.86810 0.99806 1.48652 1.04552 1.10847
1.67371 1.20395 0.83941 0.89418 0.79620 1.90679 1.73535 1.25654
1.50425 1.18807 0.88966 0.84282 0.74933 1.93141 1.96545 1.88366
1.37070 1.93028 1.84944 1.64744 1.71865 1.26441 1.00476 1.04532
1.03404 1.65934 1.04330 1.13635 1.32285 1.22404 0.93447 1.03138
0.94723 1.28010 1.03900 1.00080 1.03132 1.83879 1.08397 1.37543
1.23092 1.22799 0.99960 0.81180 0.99554 0.92872 0.92558 0.91861
0.93520 0.87660 0.89025 0.89353 0.76968 0.74856 0.86461 0.92596
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -50.47 11.39 21.45 0.24 -50.22 16
2 C 0.02 1.01 5.30 84.65 0.45 1.46 16
3 Si 0.95 42.18 29.54 68.60 2.03 44.21 16
4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16
5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16
6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
7 C -0.53 -28.00 8.56 25.60 0.22 -27.78 16
8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16
9 C 0.04 1.72 2.25 -11.46 -0.03 1.69 16
10 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16
11 C -0.11 -4.10 5.10 30.62 0.16 -3.94 16
12 C -0.12 -4.05 6.10 30.82 0.19 -3.86 16
13 C 0.11 3.61 6.45 86.51 0.56 4.17 16
14 N -0.58 -24.52 2.97 -818.05 -2.43 -26.95 16
15 C 0.49 21.25 7.19 87.66 0.63 21.88 16
16 O -0.53 -23.60 15.02 -3.03 -0.05 -23.65 16
17 C 0.37 16.06 1.74 29.10 0.05 16.11 16
18 F -0.17 -8.28 16.79 44.97 0.76 -7.53 16
19 F -0.17 -7.08 13.55 44.97 0.61 -6.47 16
20 C -0.07 -2.65 5.96 88.52 0.53 -2.12 16
21 N -0.45 -15.78 9.81 -191.45 -1.88 -17.66 16
22 C 0.01 0.34 11.35 83.66 0.95 1.29 16
23 C -0.21 -3.82 11.37 66.78 0.76 -3.06 16
24 S 0.22 5.58 22.58 -56.49 -1.28 4.31 16
25 C 0.09 4.02 4.80 86.36 0.41 4.43 16
26 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16
27 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16
28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
29 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16
30 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16
31 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16
32 H 0.09 2.94 7.02 -2.39 -0.02 2.92 16
33 H 0.21 3.43 8.06 -2.91 -0.02 3.41 16
34 H 0.24 1.72 8.06 -2.91 -0.02 1.69 16
35 H 0.12 5.98 2.74 -2.38 -0.01 5.97 16
36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16
Total: -1.00 -68.13 318.06 4.01 -64.12
By element:
Atomic # 1 Polarization: 8.46 SS G_CDS: 1.12 Total: 9.58 kcal
Atomic # 6 Polarization: 5.38 SS G_CDS: 4.88 Total: 10.26 kcal
Atomic # 7 Polarization: -90.77 SS G_CDS: -4.06 Total: -94.83 kcal
Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal
Atomic # 9 Polarization: -15.37 SS G_CDS: 1.36 Total: -14.00 kcal
Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal
Atomic # 16 Polarization: 5.58 SS G_CDS: -1.28 Total: 4.31 kcal
Total: -68.13 4.01 -64.12 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000855257245.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.017 kcal
(2) G-P(sol) polarization free energy of solvation -68.129 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds