Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48498 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47219 * 300.00166 * 3 2 1 6 6 H 1.48501 * 109.47278 * 59.99899 * 3 2 1 7 7 C 1.37873 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00216 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99957 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52850 * 60.07412 * 9 7 2 11 11 C 1.53042 * 109.49688 * 180.16038 * 9 7 2 12 12 C 1.53042 * 109.53544 * 181.31282 * 11 9 7 13 13 C 1.53630 * 109.24339 * 298.51055 * 12 11 9 14 14 N 1.46923 * 108.54276 * 54.85489 * 13 12 11 15 15 C 1.34772 * 120.62831 * 126.36940 * 14 13 12 16 16 O 1.21280 * 120.00552 * 3.27298 * 15 14 13 17 17 C 1.50707 * 120.00185 * 183.27417 * 15 14 13 18 18 F 1.39892 * 109.47246 * 75.51930 * 17 15 14 19 19 F 1.39898 * 109.46688 * 315.52244 * 17 15 14 20 20 C 1.50700 * 109.47465 * 195.52374 * 17 15 14 21 21 N 1.29028 * 124.91357 * 300.03775 * 20 17 15 22 22 C 1.31782 * 117.12343 * 179.67920 * 21 20 17 23 23 C 1.33640 * 114.50005 * 0.51999 * 22 21 20 24 24 S 1.70976 * 124.91781 * 119.99816 * 20 17 15 25 25 C 1.46927 * 118.73854 * 306.09759 * 14 13 12 26 26 H 0.96995 * 119.99719 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46134 * 301.32691 * 11 9 7 28 28 H 1.08997 * 109.46258 * 61.31105 * 11 9 7 29 29 H 1.08997 * 109.49954 * 58.58226 * 12 11 9 30 30 H 1.09000 * 109.50190 * 178.64987 * 12 11 9 31 31 H 1.08997 * 109.73504 * 295.11842 * 13 12 11 32 32 H 1.08999 * 109.66573 * 174.54927 * 13 12 11 33 33 H 1.07997 * 122.75255 * 180.33814 * 22 21 20 34 34 H 1.07995 * 126.03936 * 179.78943 * 23 22 21 35 35 H 1.09005 * 109.58527 * 173.64810 * 25 14 13 36 36 H 1.09002 * 109.58663 * 294.06882 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6254 -2.5586 -0.8900 11 6 2.2451 -3.6628 0.0052 12 6 1.4812 -4.9885 -0.0278 13 6 0.6029 -5.0982 1.2279 14 7 -0.2563 -3.9088 1.3025 15 6 -1.5930 -4.0337 1.4215 16 8 -2.0922 -5.1339 1.5278 17 6 -2.4674 -2.8063 1.4225 18 9 -2.5770 -2.3107 0.1190 19 9 -1.8986 -1.8293 2.2466 20 6 -3.8364 -3.1652 1.9402 21 7 -4.6235 -4.0362 1.4048 22 6 -5.7873 -4.2345 1.9903 23 6 -5.9980 -3.4814 3.0740 24 16 -4.5712 -2.4778 3.3226 25 6 0.3698 -2.5806 1.2509 26 1 -0.4849 0.8400 0.0004 27 1 2.8897 -3.5933 -0.8709 28 1 2.8536 -3.6170 0.9084 29 1 0.8534 -5.0246 -0.9181 30 1 2.1899 -5.8164 -0.0487 31 1 1.2340 -5.1494 2.1151 32 1 -0.0163 -5.9930 1.1653 33 1 -6.5127 -4.9452 1.6228 34 1 -6.8843 -3.4897 3.6910 35 1 -0.4034 -1.8137 1.2036 36 1 0.9822 -2.4306 2.1401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855257245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = -87.138901 kcal Electronic energy + Delta-G solvation = -25491.830431 eV Core-core repulsion = 21545.707899 eV Total energy + Delta-G solvation = -3946.122532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.59601 -48.51359 -41.26869 -40.63204 -38.59208 -35.14945 -33.78208 -32.60367 -31.63913 -29.27699 -27.10186 -26.67054 -25.17693 -23.60776 -22.36240 -21.24147 -20.45984 -20.08462 -18.89260 -18.61806 -18.26016 -17.93212 -17.12097 -16.50647 -16.16307 -15.99486 -15.84622 -15.50682 -15.40456 -15.11197 -14.79610 -14.66195 -14.59426 -14.47537 -14.28234 -13.84728 -13.57433 -13.51319 -12.87214 -12.64913 -12.52984 -12.30045 -12.20622 -11.87315 -11.70170 -11.44273 -10.95328 -10.91316 -10.72600 -10.60145 -10.48480 -10.18618 -9.68207 -8.07547 -6.21757 -0.64308 0.01016 0.56186 0.92035 1.41873 1.46135 1.48356 1.58183 1.70804 2.13551 2.45357 2.56021 3.15607 3.27207 3.38545 3.80448 4.01711 4.07400 4.24249 4.29108 4.38710 4.51897 4.60329 4.73365 4.79059 5.02273 5.03282 5.09868 5.19525 5.24104 5.45312 5.58209 5.83217 5.95028 6.10511 6.35091 6.52467 6.64491 6.88145 7.47263 8.96943 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.005480 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.867863 B = 5107.966607 C = 6390.420930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.035 3.965 10 H -0.009 1.009 11 C -0.106 4.106 12 C -0.124 4.124 13 C 0.106 3.894 14 N -0.584 5.584 15 C 0.486 3.514 16 O -0.525 6.525 17 C 0.374 3.626 18 F -0.170 7.170 19 F -0.165 7.165 20 C -0.073 4.073 21 N -0.446 5.446 22 C 0.014 3.986 23 C -0.212 4.212 24 S 0.218 5.782 25 C 0.086 3.914 26 H 0.262 0.738 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.214 0.786 34 H 0.235 0.765 35 H 0.118 0.882 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.899 -6.691 8.485 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.016 3.984 10 H 0.009 0.991 11 C -0.144 4.144 12 C -0.162 4.162 13 C -0.015 4.015 14 N -0.314 5.314 15 C 0.266 3.734 16 O -0.403 6.403 17 C 0.330 3.670 18 F -0.151 7.151 19 F -0.146 7.146 20 C -0.349 4.349 21 N -0.162 5.162 22 C -0.137 4.137 23 C -0.351 4.351 24 S 0.471 5.529 25 C -0.035 4.035 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.230 0.770 34 H 0.251 0.749 35 H 0.135 0.865 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.756 -6.634 8.770 14.057 hybrid contribution -0.113 0.766 -0.871 1.165 sum -8.869 -5.868 7.899 13.248 Atomic orbital electron populations 1.69971 1.06930 1.27310 1.50203 1.25739 0.95636 1.02289 0.94459 0.85571 0.79175 0.79883 0.77395 1.19048 1.21234 1.20571 1.21418 0.93253 0.91034 1.51485 0.92065 1.18944 0.93205 0.94020 0.92231 0.99088 1.21549 0.97785 0.93625 1.01429 1.21980 0.98705 0.99081 0.96435 1.22018 0.92832 0.86810 0.99806 1.48652 1.04552 1.10847 1.67371 1.20395 0.83941 0.89418 0.79620 1.90679 1.73535 1.25654 1.50425 1.18807 0.88966 0.84282 0.74933 1.93141 1.96545 1.88366 1.37070 1.93028 1.84944 1.64744 1.71865 1.26441 1.00476 1.04532 1.03404 1.65934 1.04330 1.13635 1.32285 1.22404 0.93447 1.03138 0.94723 1.28010 1.03900 1.00080 1.03132 1.83879 1.08397 1.37543 1.23092 1.22799 0.99960 0.81180 0.99554 0.92872 0.92558 0.91861 0.93520 0.87660 0.89025 0.89353 0.76968 0.74856 0.86461 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.47 11.39 21.45 0.24 -50.22 16 2 C 0.02 1.01 5.30 84.65 0.45 1.46 16 3 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -28.00 8.56 25.60 0.22 -27.78 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.04 1.72 2.25 -11.46 -0.03 1.69 16 10 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 11 C -0.11 -4.10 5.10 30.62 0.16 -3.94 16 12 C -0.12 -4.05 6.10 30.82 0.19 -3.86 16 13 C 0.11 3.61 6.45 86.51 0.56 4.17 16 14 N -0.58 -24.52 2.97 -818.05 -2.43 -26.95 16 15 C 0.49 21.25 7.19 87.66 0.63 21.88 16 16 O -0.53 -23.60 15.02 -3.03 -0.05 -23.65 16 17 C 0.37 16.06 1.74 29.10 0.05 16.11 16 18 F -0.17 -8.28 16.79 44.97 0.76 -7.53 16 19 F -0.17 -7.08 13.55 44.97 0.61 -6.47 16 20 C -0.07 -2.65 5.96 88.52 0.53 -2.12 16 21 N -0.45 -15.78 9.81 -191.45 -1.88 -17.66 16 22 C 0.01 0.34 11.35 83.66 0.95 1.29 16 23 C -0.21 -3.82 11.37 66.78 0.76 -3.06 16 24 S 0.22 5.58 22.58 -56.49 -1.28 4.31 16 25 C 0.09 4.02 4.80 86.36 0.41 4.43 16 26 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.09 2.94 7.02 -2.39 -0.02 2.92 16 33 H 0.21 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.24 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.12 5.98 2.74 -2.38 -0.01 5.97 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -68.13 318.06 4.01 -64.12 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.12 Total: 9.58 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 4.88 Total: 10.26 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -4.06 Total: -94.83 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 9 Polarization: -15.37 SS G_CDS: 1.36 Total: -14.00 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.28 Total: 4.31 kcal Total: -68.13 4.01 -64.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.017 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds