Wall clock time and date at job start Tue Mar 31 2020 11:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38215 * 120.01551 * 2 1 4 4 C 1.38220 * 120.03203 * 179.97438 * 3 2 1 5 5 C 1.38268 * 120.04920 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99013 * 180.02562 * 5 4 3 7 7 S 1.81393 * 109.47286 * 89.99442 * 6 5 4 8 8 O 1.42096 * 108.57861 * 65.51562 * 7 6 5 9 9 O 1.42105 * 108.57947 * 294.48635 * 7 6 5 10 10 C 1.81399 * 101.92117 * 180.02562 * 7 6 5 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 7 6 12 12 O 1.42895 * 109.47370 * 179.97438 * 11 10 7 13 13 C 1.42897 * 114.00007 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47163 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99991 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00171 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47035 * 90.00361 * 18 16 14 20 20 H 1.48500 * 109.47075 * 209.99962 * 18 16 14 21 21 H 1.48497 * 109.47091 * 330.00155 * 18 16 14 22 22 C 1.38180 * 120.02521 * 0.26737 * 5 4 3 23 23 C 1.38440 * 120.01474 * 179.97438 * 2 1 3 24 24 F 1.35099 * 120.02502 * 0.04551 * 23 2 1 25 25 H 1.09000 * 109.47287 * 90.00245 * 1 2 3 26 26 H 1.08999 * 109.46837 * 209.99954 * 1 2 3 27 27 H 1.08994 * 109.47055 * 329.99871 * 1 2 3 28 28 H 1.08004 * 119.98390 * 359.95615 * 3 2 1 29 29 H 1.07996 * 119.97796 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46596 * 329.99340 * 6 5 4 31 31 H 1.09002 * 109.46839 * 209.99964 * 6 5 4 32 32 H 1.09001 * 109.47190 * 299.99865 * 10 7 6 33 33 H 1.09004 * 109.47089 * 59.99998 * 10 7 6 34 34 H 1.09001 * 109.46962 * 300.00183 * 11 10 7 35 35 H 1.09004 * 109.46832 * 60.00020 * 11 10 7 36 36 H 1.08993 * 109.47599 * 300.00943 * 13 12 11 37 37 H 1.09002 * 109.46821 * 60.00558 * 13 12 11 38 38 H 0.97000 * 120.00120 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.01476 * 179.72767 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2733 0.0005 0.0005 6 6 5.7803 0.0025 0.0017 7 16 6.3837 0.0027 1.7123 8 8 6.0095 -1.2238 2.3245 9 8 6.0062 1.2279 2.3255 10 6 8.1821 0.0060 1.4753 11 6 8.8763 0.0072 2.8388 12 8 10.2930 0.0091 2.6521 13 6 11.0398 0.0109 3.8704 14 6 12.5137 0.0135 3.5562 15 1 12.8468 0.0142 2.5289 16 6 13.4369 0.0151 4.5802 17 7 13.0313 0.0137 5.8312 18 14 15.2639 0.0190 4.1906 19 1 15.7451 1.4201 4.0880 20 1 16.0023 -0.6799 5.2730 21 1 15.4966 -0.6800 2.9013 22 6 3.5843 -1.1972 -0.0056 23 6 2.1995 -1.1987 0.0005 24 9 1.5248 -2.3692 0.0001 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6584 2.1321 -0.0007 29 1 4.1200 2.1328 0.0001 30 1 6.1428 0.8932 -0.5116 31 1 6.1452 -0.8868 -0.5123 32 1 8.4768 -0.8832 0.9180 33 1 8.4737 0.8968 0.9189 34 1 8.5816 0.8966 3.3958 35 1 8.5848 -0.8834 3.3957 36 1 10.7903 0.9007 4.4483 37 1 10.7930 -0.8792 4.4492 38 1 13.6809 0.0152 6.5517 39 1 4.1256 -2.1318 -0.0100 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863426657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:22 Heat of formation + Delta-G solvation = -147.445870 kcal Electronic energy + Delta-G solvation = -23100.572948 eV Core-core repulsion = 19243.002864 eV Total energy + Delta-G solvation = -3857.570085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.23255 -39.74811 -37.08393 -37.02416 -36.11236 -34.48419 -32.96138 -31.41459 -31.01472 -30.15889 -27.18184 -25.83691 -23.35843 -23.10581 -22.34685 -21.54405 -19.02602 -17.64263 -17.15311 -17.12729 -16.54041 -16.29252 -16.13907 -16.02969 -15.82302 -15.17978 -15.15906 -14.56243 -14.37995 -13.94816 -13.80535 -13.67736 -13.52229 -13.22609 -13.06382 -12.64377 -12.58427 -12.16910 -12.16068 -12.08275 -11.95942 -11.57347 -11.31478 -11.28750 -11.05416 -10.89921 -10.83289 -10.68340 -10.12663 -9.31427 -9.20469 -8.97221 -8.92722 -8.29833 -6.16442 -4.19373 -0.36945 0.72905 0.77615 2.56871 3.07109 3.26977 3.31738 3.33882 3.37486 3.72063 3.82380 4.03513 4.23540 4.28933 4.37524 4.52770 4.55462 4.68110 4.82043 4.88180 4.96939 5.14692 5.15219 5.19860 5.29788 5.30540 5.50628 5.55306 5.63675 5.66419 5.82254 5.89000 5.92101 5.93102 6.43581 6.99091 7.32778 7.71095 8.04964 8.40802 8.91740 9.45365 10.94967 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.042916 B = 0.002151 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.282210 B =13013.519785 C =13138.957003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.112 4.112 3 C -0.091 4.091 4 C -0.108 4.108 5 C -0.066 4.066 6 C -0.572 4.572 7 S 2.416 3.584 8 O -0.927 6.927 9 O -0.927 6.927 10 C -0.607 4.607 11 C 0.075 3.925 12 O -0.387 6.387 13 C 0.190 3.810 14 C -0.519 4.519 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.911 3.089 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.133 4.133 23 C 0.098 3.902 24 F -0.134 7.134 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.010 0.990 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.964 1.302 -15.249 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.114 4.114 3 C -0.109 4.109 4 C -0.127 4.127 5 C -0.068 4.068 6 C -0.698 4.698 7 S 2.598 3.402 8 O -0.925 6.925 9 O -0.924 6.924 10 C -0.736 4.736 11 C -0.004 4.004 12 O -0.307 6.307 13 C 0.116 3.884 14 C -0.557 4.557 15 H 0.086 0.914 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.738 3.262 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.153 4.153 23 C 0.079 3.921 24 F -0.113 7.113 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.284 1.245 -14.452 28.287 hybrid contribution 1.343 -0.251 -0.647 1.512 sum -22.941 0.994 -15.099 27.482 Atomic orbital electron populations 1.20767 0.89803 1.03716 1.02978 1.20081 0.97383 0.91971 1.01945 1.20949 0.93743 0.97356 0.98856 1.21253 0.94543 0.97873 0.99008 1.18695 0.91885 0.93413 1.02790 1.29414 1.01064 1.13047 1.26281 1.08315 0.78339 0.75845 0.77688 1.93598 1.81299 1.45426 1.72130 1.93593 1.81252 1.45505 1.72086 1.30404 1.22403 1.12486 1.08299 1.21764 0.86528 1.01044 0.91091 1.87885 1.12771 1.95300 1.34726 1.20346 0.90904 0.95992 0.81177 1.21010 0.89348 1.51465 0.93859 0.91444 1.24972 0.99873 0.95009 0.94686 1.69960 1.34797 1.50040 0.98677 0.86291 0.83549 0.78261 0.78102 1.20403 1.20997 1.19627 1.21136 0.92656 0.99436 1.02058 1.17419 0.89709 0.81164 1.03804 1.91500 1.80150 1.45778 1.93855 0.90569 0.90939 0.90616 0.84279 0.84203 0.83381 0.83529 0.84310 0.84292 0.92635 0.92657 0.97176 0.97164 0.92489 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.84 36.01 0.35 -0.35 16 2 C -0.11 -0.96 5.89 -104.56 -0.62 -1.57 16 3 C -0.09 -0.70 9.70 -39.60 -0.38 -1.08 16 4 C -0.11 -0.91 9.70 -39.58 -0.38 -1.30 16 5 C -0.07 -0.62 5.14 -104.63 -0.54 -1.16 16 6 C -0.57 -4.15 5.93 36.01 0.21 -3.93 16 7 S 2.42 28.12 4.70 -107.50 -0.51 27.62 16 8 O -0.93 -13.89 18.10 -57.83 -1.05 -14.93 16 9 O -0.93 -13.51 18.10 -57.83 -1.05 -14.55 16 10 C -0.61 -7.52 6.17 37.16 0.23 -7.29 16 11 C 0.07 1.37 5.95 37.16 0.22 1.59 16 12 O -0.39 -9.18 10.33 -35.23 -0.36 -9.54 16 13 C 0.19 5.21 5.69 36.01 0.20 5.41 16 14 C -0.52 -15.16 9.43 -34.44 -0.32 -15.48 16 15 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.13 -1.33 9.68 -39.51 -0.38 -1.71 16 23 C 0.10 1.00 7.24 -39.42 -0.29 0.71 16 24 F -0.13 -1.43 16.48 2.25 0.04 -1.39 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.46 7.64 -51.93 -0.40 0.07 16 27 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 28 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 29 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.15 0.63 8.09 -51.92 -0.42 0.21 16 31 H 0.15 0.68 8.08 -51.92 -0.42 0.26 16 32 H 0.14 1.42 8.14 -51.92 -0.42 1.00 16 33 H 0.14 1.41 8.14 -51.92 -0.42 0.98 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -37.15 356.85 -9.05 -46.20 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -5.43 Total: -4.76 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -1.79 Total: -24.64 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -2.46 Total: -39.03 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 28.12 SS G_CDS: -0.51 Total: 27.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.15 -9.05 -46.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863426657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.244 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds