Wall clock time and date at job start Tue Mar 31 2020 11:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38215 * 120.01551 * 2 1 4 4 C 1.38220 * 120.03203 * 179.97438 * 3 2 1 5 5 C 1.38268 * 120.04920 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99013 * 180.02562 * 5 4 3 7 7 S 1.81393 * 109.47286 * 89.99442 * 6 5 4 8 8 O 1.42096 * 108.57861 * 65.51562 * 7 6 5 9 9 O 1.42105 * 108.57947 * 294.48635 * 7 6 5 10 10 C 1.81399 * 101.92117 * 180.02562 * 7 6 5 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 7 6 12 12 O 1.42895 * 109.47370 * 179.97438 * 11 10 7 13 13 C 1.42897 * 114.00007 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47163 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99991 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00171 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47035 * 90.00361 * 18 16 14 20 20 H 1.48500 * 109.47075 * 209.99962 * 18 16 14 21 21 H 1.48497 * 109.47091 * 330.00155 * 18 16 14 22 22 C 1.38180 * 120.02521 * 0.26737 * 5 4 3 23 23 C 1.38440 * 120.01474 * 179.97438 * 2 1 3 24 24 F 1.35099 * 120.02502 * 0.04551 * 23 2 1 25 25 H 1.09000 * 109.47287 * 90.00245 * 1 2 3 26 26 H 1.08999 * 109.46837 * 209.99954 * 1 2 3 27 27 H 1.08994 * 109.47055 * 329.99871 * 1 2 3 28 28 H 1.08004 * 119.98390 * 359.95615 * 3 2 1 29 29 H 1.07996 * 119.97796 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46596 * 329.99340 * 6 5 4 31 31 H 1.09002 * 109.46839 * 209.99964 * 6 5 4 32 32 H 1.09001 * 109.47190 * 299.99865 * 10 7 6 33 33 H 1.09004 * 109.47089 * 59.99998 * 10 7 6 34 34 H 1.09001 * 109.46962 * 300.00183 * 11 10 7 35 35 H 1.09004 * 109.46832 * 60.00020 * 11 10 7 36 36 H 1.08993 * 109.47599 * 300.00943 * 13 12 11 37 37 H 1.09002 * 109.46821 * 60.00558 * 13 12 11 38 38 H 0.97000 * 120.00120 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.01476 * 179.72767 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2733 0.0005 0.0005 6 6 5.7803 0.0025 0.0017 7 16 6.3837 0.0027 1.7123 8 8 6.0095 -1.2238 2.3245 9 8 6.0062 1.2279 2.3255 10 6 8.1821 0.0060 1.4753 11 6 8.8763 0.0072 2.8388 12 8 10.2930 0.0091 2.6521 13 6 11.0398 0.0109 3.8704 14 6 12.5137 0.0135 3.5562 15 1 12.8468 0.0142 2.5289 16 6 13.4369 0.0151 4.5802 17 7 13.0313 0.0137 5.8312 18 14 15.2639 0.0190 4.1906 19 1 15.7451 1.4201 4.0880 20 1 16.0023 -0.6799 5.2730 21 1 15.4966 -0.6800 2.9013 22 6 3.5843 -1.1972 -0.0056 23 6 2.1995 -1.1987 0.0005 24 9 1.5248 -2.3692 0.0001 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6584 2.1321 -0.0007 29 1 4.1200 2.1328 0.0001 30 1 6.1428 0.8932 -0.5116 31 1 6.1452 -0.8868 -0.5123 32 1 8.4768 -0.8832 0.9180 33 1 8.4737 0.8968 0.9189 34 1 8.5816 0.8966 3.3958 35 1 8.5848 -0.8834 3.3957 36 1 10.7903 0.9007 4.4483 37 1 10.7930 -0.8792 4.4492 38 1 13.6809 0.0152 6.5517 39 1 4.1256 -2.1318 -0.0100 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863426657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:21 Heat of formation + Delta-G solvation = -173.769950 kcal Electronic energy + Delta-G solvation = -23101.714446 eV Core-core repulsion = 19243.002864 eV Total energy + Delta-G solvation = -3858.711582 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.98127 -40.36920 -38.82606 -38.10716 -37.13501 -35.09792 -35.05974 -32.82569 -31.65244 -30.75582 -29.27460 -26.49329 -24.77432 -24.17182 -23.95656 -22.22106 -19.96572 -18.74494 -18.36558 -18.22881 -17.84984 -17.38728 -17.17171 -16.78991 -16.73385 -16.57116 -16.51278 -16.28579 -15.24220 -15.15768 -14.66241 -14.55375 -14.35222 -14.25137 -13.99469 -13.74834 -13.30048 -13.25907 -13.15214 -13.06514 -13.04128 -12.96491 -12.66638 -12.56074 -12.52161 -12.18319 -12.09777 -12.08735 -11.68661 -11.32855 -10.95821 -10.38186 -9.96346 -9.58915 -8.35297 -6.49181 -1.27255 0.06761 0.13424 1.39967 1.43250 1.55286 1.70810 2.29062 2.38416 2.52267 2.96615 2.98629 3.04243 3.19396 3.39765 3.61843 3.72831 3.75541 3.82114 4.01953 4.09088 4.21051 4.25288 4.46285 4.48962 4.61748 4.67019 4.72798 4.76462 4.86282 4.97820 5.02934 5.07940 5.15786 5.27927 5.30534 5.50227 5.81693 5.88127 6.38727 6.71195 7.22369 8.77204 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.042916 B = 0.002151 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.282210 B =13013.519785 C =13138.957003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 C -0.094 4.094 4 C -0.113 4.113 5 C -0.087 4.087 6 C -0.539 4.539 7 S 2.416 3.584 8 O -0.972 6.972 9 O -0.965 6.965 10 C -0.604 4.604 11 C 0.053 3.947 12 O -0.395 6.395 13 C 0.199 3.801 14 C -0.551 4.551 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.989 3.011 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.148 4.148 23 C 0.069 3.931 24 F -0.145 7.145 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.190 0.810 31 H 0.180 0.820 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.054 0.946 35 H 0.050 0.950 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.272 0.728 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.750 2.340 -17.675 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.117 4.117 3 C -0.112 4.112 4 C -0.132 4.132 5 C -0.089 4.089 6 C -0.670 4.670 7 S 2.603 3.397 8 O -0.969 6.969 9 O -0.962 6.962 10 C -0.732 4.732 11 C -0.025 4.025 12 O -0.315 6.315 13 C 0.124 3.876 14 C -0.588 4.588 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.811 3.189 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.168 4.168 23 C 0.050 3.950 24 F -0.123 7.123 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.208 0.792 31 H 0.198 0.802 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.081 0.919 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.059 2.282 -16.831 29.450 hybrid contribution 1.077 -0.556 0.054 1.213 sum -22.981 1.726 -16.776 28.506 Atomic orbital electron populations 1.20845 0.88309 1.04228 1.03936 1.20445 0.98694 0.91751 1.00827 1.21350 0.93839 0.98157 0.97837 1.21677 0.95194 0.98479 0.97843 1.18938 0.92813 0.93489 1.03619 1.29169 0.99766 1.16979 1.21048 1.08107 0.77506 0.74195 0.79865 1.93542 1.81525 1.46790 1.75064 1.93541 1.81359 1.46442 1.74830 1.30418 1.22603 1.15149 1.04995 1.22126 0.84069 1.00883 0.95454 1.87823 1.15596 1.95277 1.32819 1.20008 0.91356 0.94054 0.82203 1.21372 0.90484 1.52714 0.94256 0.91378 1.26059 1.05462 0.93780 0.94261 1.70079 1.36926 1.50143 0.99840 0.85095 0.76489 0.78909 0.78374 1.19150 1.20047 1.18571 1.21369 0.92911 1.00230 1.02260 1.17755 0.90212 0.81531 1.05467 1.91466 1.80344 1.46408 1.94127 0.89298 0.91726 0.88812 0.81383 0.82073 0.79238 0.80184 0.81912 0.81544 0.92820 0.93127 0.99120 0.99248 0.91918 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.84 71.24 0.70 -0.54 16 2 C -0.12 -1.82 5.89 -19.82 -0.12 -1.93 16 3 C -0.09 -1.21 9.70 22.26 0.22 -1.00 16 4 C -0.11 -1.60 9.70 22.27 0.22 -1.39 16 5 C -0.09 -1.41 5.14 -19.87 -0.10 -1.52 16 6 C -0.54 -5.92 5.93 71.24 0.42 -5.49 16 7 S 2.42 53.76 4.70 -56.49 -0.27 53.50 16 8 O -0.97 -29.57 18.10 -127.37 -2.31 -31.87 16 9 O -0.96 -27.75 18.10 -127.37 -2.30 -30.06 16 10 C -0.60 -14.07 6.17 71.98 0.44 -13.62 16 11 C 0.05 1.98 5.95 71.98 0.43 2.41 16 12 O -0.40 -19.14 10.33 -148.98 -1.54 -20.68 16 13 C 0.20 11.33 5.69 71.24 0.41 11.74 16 14 C -0.55 -32.70 9.43 25.60 0.24 -32.46 16 15 H 0.07 3.93 7.81 -2.91 -0.02 3.90 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 18 Si 0.99 43.93 29.54 68.60 2.03 45.96 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 22 C -0.15 -2.81 9.68 22.31 0.22 -2.59 16 23 C 0.07 1.38 7.24 22.38 0.16 1.54 16 24 F -0.14 -3.14 16.48 44.97 0.74 -2.40 16 25 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.79 7.64 -2.39 -0.02 0.77 16 27 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 28 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 29 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 30 H 0.19 0.58 8.09 -2.39 -0.02 0.56 16 31 H 0.18 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.16 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.17 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -83.84 356.85 1.38 -82.46 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.04 Total: 3.32 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 3.70 Total: -44.21 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -76.46 SS G_CDS: -6.15 Total: -82.61 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.74 Total: -2.40 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 53.76 SS G_CDS: -0.27 Total: 53.50 kcal Total: -83.84 1.38 -82.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863426657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.314 kcal (2) G-P(sol) polarization free energy of solvation -83.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds