Wall clock time and date at job start Tue Mar 31 2020 11:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00557 * 2 1 4 4 H 1.48500 * 109.47334 * 239.99652 * 3 2 1 5 5 H 1.48503 * 109.47120 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47330 * 119.99283 * 3 2 1 7 7 C 1.38815 * 119.99468 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00167 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75128 * 95.00467 * 11 10 9 13 13 N 1.35315 * 106.17731 * 179.97438 * 12 11 10 14 14 C 1.46502 * 125.87191 * 179.73450 * 13 12 11 15 15 C 1.50693 * 109.47217 * 125.00138 * 14 13 12 16 16 C 1.34517 * 125.78743 * 89.71890 * 15 14 13 17 17 C 1.41386 * 106.84240 * 179.89277 * 16 15 14 18 18 C 1.50691 * 126.58430 * 180.12315 * 17 16 15 19 19 F 1.39895 * 109.47449 * 180.26955 * 18 17 16 20 20 F 1.39902 * 109.47157 * 300.27210 * 18 17 16 21 21 F 1.39905 * 109.47180 * 60.26833 * 18 17 16 22 22 C 1.34519 * 106.83490 * 0.36744 * 17 16 15 23 23 O 1.34298 * 108.42423 * 359.77771 * 22 17 16 24 24 N 1.28719 * 108.26209 * 0.02562 * 13 12 11 25 25 N 1.28633 * 110.17824 * 359.97438 * 24 13 12 26 26 H 0.97002 * 119.99152 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99462 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.46738 * 60.00318 * 10 9 7 29 29 H 1.08998 * 109.47615 * 300.00338 * 10 9 7 30 30 H 1.07998 * 126.91323 * 359.95581 * 12 11 10 31 31 H 1.09004 * 109.47039 * 245.00372 * 14 13 12 32 32 H 1.09002 * 109.47052 * 5.00148 * 14 13 12 33 33 H 1.07997 * 126.58084 * 0.02562 * 16 15 14 34 34 H 1.08004 * 125.78330 * 179.75298 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3882 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0784 -4.8022 -0.0001 12 6 0.6244 -5.4790 -1.0807 13 7 -0.2302 -6.4153 -0.6075 14 6 -0.9736 -7.3855 -1.4151 15 6 -0.6842 -8.7787 -0.9191 16 6 -1.3720 -9.4332 0.0338 17 6 -0.7638 -10.7011 0.1802 18 6 -1.1830 -11.7942 1.1291 19 9 -0.3300 -12.8930 0.9808 20 9 -1.1118 -11.3226 2.4443 21 9 -2.4966 -12.1815 0.8431 22 6 0.2644 -10.7424 -0.6862 23 8 0.3078 -9.5754 -1.3493 24 7 -0.2824 -6.3031 0.6737 25 7 0.4869 -5.3502 1.0673 26 1 -0.4849 0.8401 -0.0004 27 1 0.3554 -2.3880 -0.0002 28 1 2.6844 -3.7146 0.8906 29 1 2.6845 -3.7147 -0.8894 30 1 0.8904 -5.3062 -2.1131 31 1 -2.0418 -7.1848 -1.3320 32 1 -0.6680 -7.3003 -2.4579 33 1 -2.2263 -9.0623 0.5804 34 1 0.9405 -11.5732 -0.8248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881374786.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:02 Heat of formation + Delta-G solvation = -12.784869 kcal Electronic energy + Delta-G solvation = -24951.594231 eV Core-core repulsion = 20474.775506 eV Total energy + Delta-G solvation = -4476.818724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.089 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.50253 -48.06217 -47.95044 -43.51601 -42.92026 -35.65626 -34.53510 -34.24861 -31.89261 -31.24677 -29.87587 -27.48989 -26.52119 -25.80507 -22.86047 -22.47906 -22.04530 -21.37083 -20.61506 -18.86111 -18.80474 -18.49625 -17.58522 -17.13423 -16.90929 -16.38368 -16.29356 -14.92349 -14.85001 -14.83247 -14.60919 -14.56563 -14.42749 -14.15575 -14.13203 -13.98591 -13.68043 -13.53216 -13.09613 -12.85922 -12.64215 -12.50693 -11.95674 -11.28674 -10.92234 -10.83858 -10.79678 -10.50706 -10.14992 -10.01500 -9.74359 -9.40712 -8.90597 -8.86320 -6.92273 -5.74070 -3.03803 0.74226 1.45113 1.70219 2.03539 2.34614 2.56055 2.86893 3.32496 3.46422 3.46703 3.50746 3.51997 3.91348 4.03329 4.14057 4.32604 4.61138 4.64636 4.66924 4.73062 5.09536 5.17874 5.23809 5.43464 5.54990 5.61040 5.74410 6.16557 6.23327 6.36819 6.63006 6.64242 6.75916 7.70627 8.43282 8.77287 9.54987 10.10342 10.46332 11.48660 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.002232 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.219962 B =12540.794071 C =12673.733882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.232 3.768 11 C -0.004 4.004 12 C -0.039 4.039 13 N -0.308 5.308 14 C 0.206 3.794 15 C -0.036 4.036 16 C -0.120 4.120 17 C -0.286 4.286 18 C 0.542 3.458 19 F -0.179 7.179 20 F -0.171 7.171 21 F -0.174 7.174 22 C 0.058 3.942 23 O -0.153 6.153 24 N -0.089 5.089 25 N -0.248 5.248 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.192 0.808 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -27.266 -5.932 28.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.103 3.897 11 C -0.141 4.141 12 C -0.189 4.189 13 N -0.102 5.102 14 C 0.085 3.915 15 C -0.085 4.085 16 C -0.140 4.140 17 C -0.289 4.289 18 C 0.487 3.513 19 F -0.160 7.160 20 F -0.152 7.152 21 F -0.156 7.156 22 C -0.013 4.013 23 O -0.047 6.047 24 N -0.068 5.068 25 N -0.116 5.116 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.209 0.791 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.185 0.815 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.458 -27.607 -4.850 28.242 hybrid contribution 0.312 0.899 -0.747 1.210 sum -3.146 -26.708 -5.597 27.469 Atomic orbital electron populations 1.69673 1.05181 1.25782 1.57444 1.24762 0.95533 0.97738 1.02875 0.86226 0.78466 0.83348 0.77873 1.21237 1.21732 1.21169 1.19186 0.91070 0.83819 1.43094 0.90932 1.42297 1.05973 0.99232 1.89563 1.18958 0.90024 0.81358 0.99332 1.22510 1.02470 1.00757 0.88347 1.23460 0.98333 0.94857 1.02234 1.47273 1.31420 1.24595 1.06961 1.20191 0.98315 0.78168 0.94843 1.22048 0.91445 0.94166 1.00879 1.21355 1.02548 0.91861 0.98262 1.20514 1.04437 0.98099 1.05872 1.17254 0.74752 0.80063 0.79185 1.93180 1.70788 1.56387 1.95664 1.93257 1.95960 1.88247 1.37719 1.93226 1.37137 1.91817 1.93378 1.24055 0.97677 0.88057 0.91520 1.84124 1.44728 1.22874 1.52982 1.78296 1.19603 1.16739 0.92125 1.75126 1.06406 1.03842 1.26255 0.93452 0.78090 0.94287 0.94420 0.79139 0.84875 0.85515 0.81522 0.76183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.87 5.59 -61.09 -0.34 -19.22 16 10 C 0.23 4.84 6.82 -5.20 -0.04 4.81 16 11 C 0.00 -0.07 6.61 -82.78 -0.55 -0.62 16 12 C -0.04 -0.56 11.50 -17.05 -0.20 -0.76 16 13 N -0.31 -4.04 3.43 -62.44 -0.21 -4.25 16 14 C 0.21 1.57 6.98 -5.20 -0.04 1.53 16 15 C -0.04 -0.31 6.70 -35.63 -0.24 -0.55 16 16 C -0.12 -1.08 10.77 -39.70 -0.43 -1.51 16 17 C -0.29 -2.46 5.59 -104.74 -0.59 -3.05 16 18 C 0.54 4.81 3.53 36.00 0.13 4.94 16 19 F -0.18 -1.46 16.79 2.25 0.04 -1.42 16 20 F -0.17 -1.81 17.30 2.25 0.04 -1.77 16 21 F -0.17 -1.60 17.30 2.25 0.04 -1.56 16 22 C 0.06 0.40 11.52 29.42 0.34 0.74 16 23 O -0.15 -1.30 10.65 5.73 0.06 -1.24 16 24 N -0.09 -1.52 12.93 60.35 0.78 -0.73 16 25 N -0.25 -5.01 12.41 33.29 0.41 -4.60 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.39 10.79 7.66 -40.82 -0.31 10.47 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.13 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.22 0.71 7.95 -52.48 -0.42 0.29 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -35.61 326.20 -3.22 -38.84 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -2.81 Total: 3.35 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.85 Total: -1.85 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 1.36 Total: -56.69 kcal Atomic # 8 Polarization: -1.30 SS G_CDS: 0.06 Total: -1.24 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.12 Total: -4.76 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.61 -3.22 -38.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881374786.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.052 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds