Wall clock time and date at job start Tue Mar 31 2020 10:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46785 * 2 1 4 4 C 1.50694 * 109.47286 * 240.00359 * 2 1 3 5 5 H 1.08004 * 119.99545 * 241.35084 * 4 2 1 6 6 C 1.37872 * 120.00355 * 61.34194 * 4 2 1 7 7 N 1.31518 * 120.00206 * 193.97751 * 6 4 2 8 8 Si 1.86802 * 119.99857 * 13.98268 * 6 4 2 9 9 H 1.48496 * 109.47142 * 84.54557 * 8 6 4 10 10 H 1.48507 * 109.46850 * 204.54541 * 8 6 4 11 11 H 1.48497 * 109.47066 * 324.54467 * 8 6 4 12 12 C 1.53001 * 109.47158 * 119.99648 * 2 1 3 13 13 N 1.46501 * 109.47138 * 300.00667 * 12 2 1 14 14 C 1.34774 * 119.99838 * 180.02562 * 13 12 2 15 15 O 1.21591 * 120.00162 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00077 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99940 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46769 * 179.97438 * 17 16 14 19 19 C 1.33405 * 122.54553 * 259.97505 * 18 17 16 20 20 S 1.75882 * 109.60696 * 180.02562 * 19 18 17 21 21 C 1.75876 * 90.98064 * 0.02562 * 20 19 18 22 22 C 1.33447 * 109.60084 * 359.97438 * 21 20 19 23 23 Cl 1.73593 * 122.54932 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.47239 * 309.37113 * 1 2 3 25 25 H 1.09008 * 109.47092 * 69.36982 * 1 2 3 26 26 H 1.08996 * 109.46850 * 189.36614 * 1 2 3 27 27 H 1.09004 * 109.46959 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47421 * 299.99942 * 3 2 1 29 29 H 1.09004 * 109.47441 * 59.99870 * 3 2 1 30 30 H 0.97000 * 120.00252 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46926 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.46782 * 60.00114 * 12 2 1 33 33 H 0.96997 * 119.99941 * 359.97438 * 13 12 2 34 34 H 0.96997 * 119.99703 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.46578 * 60.00044 * 17 16 14 36 36 H 1.08997 * 109.47410 * 300.00086 * 17 16 14 37 37 H 1.08004 * 125.19302 * 359.76607 * 19 18 17 38 38 H 1.08002 * 125.20013 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2233 -2.4825 7 7 1.9158 -0.9725 -3.5460 8 14 1.0276 1.5007 -2.6684 9 1 2.1417 2.4817 -2.7083 10 1 0.2470 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5767 -1.4792 3.7811 16 7 1.4287 0.1449 4.7700 17 6 1.7826 -0.3557 6.1006 18 6 1.1598 0.5271 7.1513 19 6 1.8466 1.4747 7.7916 20 16 0.7940 2.2937 8.9383 21 6 -0.5597 1.2728 8.4708 22 6 -0.1685 0.4154 7.5260 23 17 -1.2432 -0.7510 6.8204 24 1 -0.3634 0.6519 0.7945 25 1 -0.3634 0.3621 -0.9618 26 1 -0.3633 -1.0139 0.1672 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6981 -0.6298 -4.4269 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7488 1.2493 33 1 0.9941 0.7582 2.3564 34 1 0.8713 0.9337 4.6809 35 1 2.8665 -0.3473 6.2153 36 1 1.4129 -1.3745 6.2158 37 1 2.8907 1.7013 7.6333 38 1 -1.5556 1.3315 8.8845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:09 Heat of formation + Delta-G solvation = -11.713568 kcal Electronic energy + Delta-G solvation = -21622.696640 eV Core-core repulsion = 18231.641476 eV Total energy + Delta-G solvation = -3391.055164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13398 -39.64138 -38.44657 -37.17178 -35.32005 -34.92873 -33.37364 -31.04978 -28.29984 -27.98273 -27.17876 -26.38867 -24.03756 -22.01446 -20.91304 -20.26065 -19.51024 -18.70725 -18.02736 -17.29864 -17.10876 -16.67513 -16.39373 -15.52963 -15.27657 -15.18841 -14.82327 -14.61061 -14.53030 -14.33939 -14.05186 -13.95975 -13.73686 -13.49488 -13.36296 -12.85878 -12.41770 -12.37446 -12.12501 -12.01773 -11.93773 -11.80530 -11.74478 -11.36731 -11.03703 -10.60182 -10.38676 -10.31808 -9.88206 -9.67764 -9.36552 -8.28700 -6.30417 -0.18160 0.32600 0.70620 1.15948 1.38177 1.39060 1.52384 1.63441 2.01326 2.23495 2.36366 3.07353 3.47636 3.67000 3.86806 4.10210 4.29169 4.36842 4.43726 4.50475 4.64110 4.67463 4.77754 4.86734 4.88164 4.96854 5.00410 5.08852 5.19590 5.20997 5.44899 5.48383 5.59061 5.75020 5.81790 6.06621 6.33134 6.74097 7.17259 7.34429 7.65549 8.88686 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.002786 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.676705 B =10047.837240 C =10140.525983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.029 3.971 3 C -0.145 4.145 4 C -0.518 4.518 5 H 0.027 0.973 6 C 0.016 3.984 7 N -0.948 5.948 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.316 1.316 11 H -0.204 1.204 12 C 0.178 3.822 13 N -0.726 5.726 14 C 0.701 3.299 15 O -0.640 6.640 16 N -0.725 5.725 17 C 0.203 3.797 18 C -0.132 4.132 19 C -0.179 4.179 20 S 0.200 5.800 21 C -0.215 4.215 22 C -0.055 4.055 23 Cl -0.058 7.058 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.264 0.736 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.407 0.593 34 H 0.408 0.592 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.194 0.806 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.603 12.411 29.284 32.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 C -0.202 4.202 4 C -0.556 4.556 5 H 0.045 0.955 6 C -0.181 4.181 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.246 1.246 11 H -0.127 1.127 12 C 0.053 3.947 13 N -0.382 5.382 14 C 0.401 3.599 15 O -0.522 6.522 16 N -0.382 5.382 17 C 0.077 3.923 18 C -0.145 4.145 19 C -0.316 4.316 20 S 0.464 5.536 21 C -0.352 4.352 22 C -0.094 4.094 23 Cl -0.030 7.030 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.244 0.756 34 H 0.244 0.756 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.211 0.789 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.889 12.569 30.216 33.251 hybrid contribution -0.690 -0.666 -2.104 2.312 sum -6.579 11.903 28.112 31.229 Atomic orbital electron populations 1.22206 0.96132 1.00519 1.00808 1.18646 0.93716 0.93190 0.91686 1.22275 1.00997 0.96689 1.00227 1.21045 1.32885 1.11098 0.90618 0.95458 1.25875 0.95387 1.01711 0.95163 1.70120 1.50809 1.38352 0.99421 0.86311 0.79416 0.79815 0.76922 1.20809 1.24556 1.12728 1.20862 0.97056 0.94486 0.82274 1.45090 1.56072 1.33338 1.03687 1.16089 0.80148 0.82523 0.81179 1.90886 1.45005 1.29641 1.86646 1.44878 1.56615 1.33048 1.03661 1.19601 0.99301 0.95491 0.77897 1.18496 0.92771 1.01097 1.02134 1.25890 1.05467 0.99428 1.00846 1.84374 0.98086 1.33686 1.37407 1.25875 1.05797 1.00870 1.02614 1.19822 0.91858 0.97284 1.00419 1.98399 1.63666 1.57635 1.83300 0.91613 0.93630 0.94274 0.93455 0.94717 0.90756 0.92681 0.94128 0.94619 0.75558 0.75620 0.90525 0.92060 0.78911 0.79170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 7.53 71.98 0.54 -4.79 16 2 C 0.03 1.23 0.50 -52.93 -0.03 1.21 16 3 C -0.15 -5.39 7.52 71.98 0.54 -4.85 16 4 C -0.52 -28.90 8.62 25.60 0.22 -28.68 16 5 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 6 C 0.02 0.91 5.32 84.65 0.45 1.36 16 7 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 8 Si 0.95 42.80 22.79 68.60 1.56 44.36 16 9 H -0.28 -12.41 7.10 99.48 0.71 -11.70 16 10 H -0.32 -14.77 7.11 99.48 0.71 -14.06 16 11 H -0.20 -7.73 4.65 99.48 0.46 -7.27 16 12 C 0.18 7.27 4.49 86.38 0.39 7.66 16 13 N -0.73 -22.80 5.01 -478.54 -2.40 -25.20 16 14 C 0.70 22.77 8.57 179.06 1.53 24.30 16 15 O -0.64 -27.03 16.34 -4.00 -0.07 -27.09 16 16 N -0.73 -16.53 5.55 -482.28 -2.68 -19.21 16 17 C 0.20 4.25 5.50 85.63 0.47 4.72 16 18 C -0.13 -2.02 5.17 -20.90 -0.11 -2.13 16 19 C -0.18 -1.92 10.95 66.73 0.73 -1.19 16 20 S 0.20 1.61 23.34 -56.49 -1.32 0.29 16 21 C -0.22 -2.36 11.08 66.73 0.74 -1.62 16 22 C -0.05 -0.85 6.26 21.24 0.13 -0.71 16 23 Cl -0.06 -1.11 28.23 -2.72 -0.08 -1.19 16 24 H 0.07 1.94 7.13 -2.38 -0.02 1.92 16 25 H 0.04 1.83 4.30 -2.38 -0.01 1.82 16 26 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 27 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.03 1.34 2.25 -2.39 -0.01 1.34 16 29 H 0.07 2.10 6.86 -2.38 -0.02 2.08 16 30 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.41 10.10 6.27 -92.71 -0.58 9.51 16 34 H 0.41 7.12 8.48 -92.71 -0.79 6.34 16 35 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 36 H 0.06 1.51 7.75 -2.39 -0.02 1.50 16 37 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -73.25 331.66 0.45 -72.81 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.50 Total: 18.97 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.61 Total: -4.74 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -4.78 Total: -103.41 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.07 Total: -27.09 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.56 Total: 44.36 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.29 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -73.25 0.45 -72.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.095 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds