Wall clock time and date at job start Tue Mar 31 2020 11:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 Br 1.96598 * 115.56364 * 2 1 4 4 C 1.53011 * 117.49890 * 145.68746 * 2 1 3 5 5 C 1.53004 * 59.99910 * 107.49268 * 4 2 1 6 6 H 1.08995 * 117.52091 * 107.48414 * 5 4 2 7 7 C 1.53000 * 117.49854 * 252.51338 * 5 4 2 8 8 N 1.46896 * 109.47065 * 243.62365 * 7 5 4 9 9 C 1.46908 * 111.00040 * 179.97438 * 8 7 5 10 10 C 1.53038 * 109.45880 * 275.06781 * 9 8 7 11 11 C 1.53186 * 109.31325 * 178.61733 * 10 9 8 12 12 N 1.46919 * 108.77714 * 54.62966 * 11 10 9 13 13 C 1.36944 * 120.62948 * 126.41616 * 12 11 10 14 14 H 1.07999 * 119.99901 * 331.82757 * 13 12 11 15 15 C 1.38816 * 119.99849 * 151.82458 * 13 12 11 16 16 N 1.31618 * 120.00251 * 343.07517 * 15 13 12 17 17 Si 1.86796 * 119.99828 * 163.07416 * 15 13 12 18 18 H 1.48501 * 109.47154 * 89.99862 * 17 15 13 19 19 H 1.48498 * 109.47306 * 210.00294 * 17 15 13 20 20 H 1.48504 * 109.47283 * 330.00340 * 17 15 13 21 21 C 1.46929 * 118.74444 * 306.39299 * 12 11 10 22 22 C 1.53041 * 109.46012 * 154.99908 * 9 8 7 23 23 H 1.09006 * 109.47078 * 205.68872 * 1 2 3 24 24 H 1.08996 * 109.47166 * 325.69163 * 1 2 3 25 25 H 1.08997 * 109.46838 * 85.68770 * 1 2 3 26 26 H 1.08998 * 117.49597 * 359.97438 * 4 2 1 27 27 H 1.08992 * 117.49477 * 214.98066 * 4 2 1 28 28 H 1.08999 * 109.47547 * 123.61650 * 7 5 4 29 29 H 1.09002 * 109.47079 * 3.62114 * 7 5 4 30 30 H 1.00897 * 110.99888 * 303.95007 * 8 7 5 31 31 H 1.09005 * 109.45696 * 35.02643 * 9 8 7 32 32 H 1.09003 * 109.49756 * 298.56408 * 10 9 8 33 33 H 1.09003 * 109.50168 * 58.65819 * 10 9 8 34 34 H 1.09007 * 109.58261 * 294.84317 * 11 10 9 35 35 H 1.08998 * 109.70517 * 174.49009 * 11 10 9 36 36 H 0.96999 * 119.99803 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.58757 * 293.82863 * 21 12 11 38 38 H 1.08992 * 109.70712 * 173.46473 * 21 12 11 39 39 H 1.09000 * 109.49533 * 301.33553 * 22 9 8 40 40 H 1.08996 * 109.49528 * 61.39846 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3783 1.7735 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 1 3.1714 -0.8751 -1.2686 7 6 1.3589 -2.1562 -1.4714 8 7 2.2082 -3.0732 -2.2433 9 6 1.3978 -4.0837 -2.9363 10 6 1.1137 -5.2490 -1.9858 11 6 0.2399 -6.2844 -2.7006 12 7 0.8991 -6.6751 -3.9541 13 6 1.1373 -7.9939 -4.2355 14 1 1.2799 -8.7005 -3.4312 15 6 1.1955 -8.4226 -5.5545 16 7 0.7042 -7.6677 -6.5142 17 14 1.9712 -10.0710 -5.9675 18 1 0.9316 -11.1307 -5.9293 19 1 2.5675 -10.0110 -7.3262 20 1 3.0313 -10.3818 -4.9750 21 6 1.2976 -5.6240 -4.9003 22 6 2.1597 -4.5960 -4.1608 23 1 -0.3633 -0.9261 0.4455 24 1 -0.3633 0.8488 0.5792 25 1 -0.3633 0.0773 -1.0247 26 1 1.6112 -1.8582 1.2687 27 1 3.1715 -0.8751 1.2683 28 1 0.6676 -1.6483 -2.1439 29 1 0.7947 -2.7213 -0.7295 30 1 2.7891 -2.5664 -2.8943 31 1 0.4558 -3.6375 -3.2552 32 1 2.0541 -5.7115 -1.6860 33 1 0.5918 -4.8795 -1.1030 34 1 -0.7354 -5.8500 -2.9206 35 1 0.1145 -7.1610 -2.0650 36 1 0.7446 -7.9675 -7.4358 37 1 0.4087 -5.1357 -5.2996 38 1 1.8714 -6.0626 -5.7165 39 1 2.3821 -3.7618 -4.8261 40 1 3.0904 -5.0641 -3.8405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892908630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:34 Heat of formation + Delta-G solvation = 39.156234 kcal Electronic energy + Delta-G solvation = -18956.716471 eV Core-core repulsion = 16046.519725 eV Total energy + Delta-G solvation = -2910.196746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -38.91160 -37.68423 -34.81431 -32.14603 -30.52715 -29.98840 -29.32694 -28.78076 -26.00061 -24.11888 -22.30220 -21.53868 -21.18651 -19.55126 -18.89570 -16.74353 -16.11954 -15.40432 -14.98659 -14.63869 -14.21444 -13.88029 -13.53675 -13.46534 -13.28699 -12.93530 -12.63207 -12.36247 -12.08200 -11.93131 -11.50183 -11.34954 -11.11005 -10.98262 -10.84610 -10.68313 -10.56030 -10.33536 -10.20278 -10.00294 -9.91716 -9.70094 -9.57671 -9.41830 -8.45913 -8.19109 -6.65459 -5.77864 -3.19721 1.32824 3.18246 3.38399 3.45442 3.48385 4.06504 4.27168 4.44246 4.51298 4.66911 5.07282 5.17999 5.34743 5.35853 5.37625 5.43715 5.50002 5.50609 5.55738 5.63239 5.71299 5.76814 5.93263 5.96225 6.16427 6.34924 6.48750 6.53972 6.63662 6.67239 6.82880 7.04791 7.33026 7.37698 7.58273 7.66769 7.81231 8.46807 9.22915 9.86584 10.43493 11.30959 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.046757 B = 0.002395 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.698382 B =11687.674343 C =11836.741783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 Br -0.124 7.124 4 C -0.144 4.144 5 C -0.113 4.113 6 H 0.117 0.883 7 C 0.090 3.910 8 N -0.686 5.686 9 C 0.097 3.903 10 C -0.116 4.116 11 C 0.145 3.855 12 N -0.592 5.592 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.174 3.826 22 C -0.141 4.141 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.337 0.663 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.054 0.946 36 H 0.253 0.747 37 H 0.015 0.985 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 19.343 13.820 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.177 4.177 3 Br -0.043 7.043 4 C -0.182 4.182 5 C -0.133 4.133 6 H 0.135 0.865 7 C -0.040 4.040 8 N -0.317 5.317 9 C -0.012 4.012 10 C -0.156 4.156 11 C 0.018 3.982 12 N -0.315 5.315 13 C -0.380 4.380 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.549 5.549 17 Si 0.731 3.269 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.048 3.952 22 C -0.181 4.181 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.280 19.506 14.177 24.221 hybrid contribution -0.142 -0.480 -0.988 1.107 sum 2.138 19.027 13.189 23.250 Atomic orbital electron populations 1.21476 0.89172 1.03197 1.03201 1.25021 0.96396 0.84898 1.11351 1.97346 1.82077 1.25680 1.99152 1.23518 1.02152 0.97720 0.94785 1.22744 1.00567 0.95485 0.94508 0.86536 1.21550 0.93652 0.91772 0.97039 1.60583 1.23922 1.16402 1.30775 1.21477 0.94280 0.91585 0.93856 1.22000 1.00858 0.95983 0.96766 1.20923 0.92994 0.95424 0.88905 1.44046 1.66956 1.02758 1.17702 1.19185 1.42523 0.84904 0.91411 0.91725 1.25043 1.00171 0.97839 0.96678 1.70028 1.46888 1.38225 0.99770 0.86309 0.79318 0.83779 0.77463 1.21424 1.21577 1.20453 1.20725 0.95181 0.87152 0.92174 1.22402 1.00535 0.99489 0.95637 0.90770 0.91217 0.91165 0.87309 0.87748 0.94744 0.90572 0.84522 0.94669 0.91730 0.93696 0.96857 0.92729 0.93672 0.96642 0.89340 0.93635 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 8.92 37.16 0.33 -0.56 16 2 C -0.10 -0.89 3.11 -90.61 -0.28 -1.17 16 3 Br -0.12 -1.20 33.94 -68.01 -2.31 -3.51 16 4 C -0.14 -1.24 9.64 -26.72 -0.26 -1.50 16 5 C -0.11 -1.10 5.77 -90.61 -0.52 -1.62 16 6 H 0.12 1.18 8.13 -51.93 -0.42 0.76 16 7 C 0.09 1.01 4.84 -3.83 -0.02 0.99 16 8 N -0.69 -9.34 6.31 -106.68 -0.67 -10.01 16 9 C 0.10 1.61 2.46 -67.67 -0.17 1.44 16 10 C -0.12 -2.05 5.59 -26.62 -0.15 -2.20 16 11 C 0.14 3.04 6.52 -3.72 -0.02 3.02 16 12 N -0.59 -14.88 2.99 -172.33 -0.52 -15.40 16 13 C -0.25 -6.91 9.58 -15.05 -0.14 -7.05 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 15 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 16 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 17 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 22 C -0.14 -2.65 5.36 -26.61 -0.14 -2.80 16 23 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 24 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 25 H 0.07 0.57 7.83 -51.93 -0.41 0.16 16 26 H 0.11 0.87 7.94 -51.93 -0.41 0.46 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.03 0.39 7.68 -51.93 -0.40 0.00 16 29 H 0.08 0.87 7.14 -51.93 -0.37 0.50 16 30 H 0.34 4.30 8.32 -39.29 -0.33 3.97 16 31 H 0.04 0.61 7.80 -51.93 -0.40 0.20 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.04 0.70 7.42 -51.93 -0.39 0.31 16 34 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 35 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 36 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 2.35 6.07 -51.93 -0.31 2.04 16 39 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -28.73 334.64 -11.11 -39.85 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.77 Total: 0.38 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.48 Total: -7.39 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.57 Total: -51.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 35 Polarization: -1.20 SS G_CDS: -2.31 Total: -3.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.73 -11.11 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892908630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.003 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds