Wall clock time and date at job start Tue Mar 31 2020 11:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 Br 1.96598 * 115.56364 * 2 1 4 4 C 1.53011 * 117.49890 * 145.68746 * 2 1 3 5 5 C 1.53004 * 59.99910 * 107.49268 * 4 2 1 6 6 H 1.08995 * 117.52091 * 107.48414 * 5 4 2 7 7 C 1.53000 * 117.49854 * 252.51338 * 5 4 2 8 8 N 1.46896 * 109.47065 * 243.62365 * 7 5 4 9 9 C 1.46908 * 111.00040 * 179.97438 * 8 7 5 10 10 C 1.53038 * 109.45880 * 275.06781 * 9 8 7 11 11 C 1.53186 * 109.31325 * 178.61733 * 10 9 8 12 12 N 1.46919 * 108.77714 * 54.62966 * 11 10 9 13 13 C 1.36944 * 120.62948 * 126.41616 * 12 11 10 14 14 H 1.07999 * 119.99901 * 331.82757 * 13 12 11 15 15 C 1.38816 * 119.99849 * 151.82458 * 13 12 11 16 16 N 1.31618 * 120.00251 * 343.07517 * 15 13 12 17 17 Si 1.86796 * 119.99828 * 163.07416 * 15 13 12 18 18 H 1.48501 * 109.47154 * 89.99862 * 17 15 13 19 19 H 1.48498 * 109.47306 * 210.00294 * 17 15 13 20 20 H 1.48504 * 109.47283 * 330.00340 * 17 15 13 21 21 C 1.46929 * 118.74444 * 306.39299 * 12 11 10 22 22 C 1.53041 * 109.46012 * 154.99908 * 9 8 7 23 23 H 1.09006 * 109.47078 * 205.68872 * 1 2 3 24 24 H 1.08996 * 109.47166 * 325.69163 * 1 2 3 25 25 H 1.08997 * 109.46838 * 85.68770 * 1 2 3 26 26 H 1.08998 * 117.49597 * 359.97438 * 4 2 1 27 27 H 1.08992 * 117.49477 * 214.98066 * 4 2 1 28 28 H 1.08999 * 109.47547 * 123.61650 * 7 5 4 29 29 H 1.09002 * 109.47079 * 3.62114 * 7 5 4 30 30 H 1.00897 * 110.99888 * 303.95007 * 8 7 5 31 31 H 1.09005 * 109.45696 * 35.02643 * 9 8 7 32 32 H 1.09003 * 109.49756 * 298.56408 * 10 9 8 33 33 H 1.09003 * 109.50168 * 58.65819 * 10 9 8 34 34 H 1.09007 * 109.58261 * 294.84317 * 11 10 9 35 35 H 1.08998 * 109.70517 * 174.49009 * 11 10 9 36 36 H 0.96999 * 119.99803 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.58757 * 293.82863 * 21 12 11 38 38 H 1.08992 * 109.70712 * 173.46473 * 21 12 11 39 39 H 1.09000 * 109.49533 * 301.33553 * 22 9 8 40 40 H 1.08996 * 109.49528 * 61.39846 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3783 1.7735 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 1 3.1714 -0.8751 -1.2686 7 6 1.3589 -2.1562 -1.4714 8 7 2.2082 -3.0732 -2.2433 9 6 1.3978 -4.0837 -2.9363 10 6 1.1137 -5.2490 -1.9858 11 6 0.2399 -6.2844 -2.7006 12 7 0.8991 -6.6751 -3.9541 13 6 1.1373 -7.9939 -4.2355 14 1 1.2799 -8.7005 -3.4312 15 6 1.1955 -8.4226 -5.5545 16 7 0.7042 -7.6677 -6.5142 17 14 1.9712 -10.0710 -5.9675 18 1 0.9316 -11.1307 -5.9293 19 1 2.5675 -10.0110 -7.3262 20 1 3.0313 -10.3818 -4.9750 21 6 1.2976 -5.6240 -4.9003 22 6 2.1597 -4.5960 -4.1608 23 1 -0.3633 -0.9261 0.4455 24 1 -0.3633 0.8488 0.5792 25 1 -0.3633 0.0773 -1.0247 26 1 1.6112 -1.8582 1.2687 27 1 3.1715 -0.8751 1.2683 28 1 0.6676 -1.6483 -2.1439 29 1 0.7947 -2.7213 -0.7295 30 1 2.7891 -2.5664 -2.8943 31 1 0.4558 -3.6375 -3.2552 32 1 2.0541 -5.7115 -1.6860 33 1 0.5918 -4.8795 -1.1030 34 1 -0.7354 -5.8500 -2.9206 35 1 0.1145 -7.1610 -2.0650 36 1 0.7446 -7.9675 -7.4358 37 1 0.4087 -5.1357 -5.2996 38 1 1.8714 -6.0626 -5.7165 39 1 2.3821 -3.7618 -4.8261 40 1 3.0904 -5.0641 -3.8405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892908630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:33 Heat of formation + Delta-G solvation = 23.020882 kcal Electronic energy + Delta-G solvation = -18957.416152 eV Core-core repulsion = 16046.519725 eV Total energy + Delta-G solvation = -2910.896428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93351 -38.98507 -36.31775 -33.90480 -31.89704 -31.29275 -30.69317 -29.47731 -27.41609 -25.71540 -23.85929 -22.91239 -22.26716 -20.79455 -20.04430 -18.67180 -16.99961 -16.78206 -16.53041 -15.87319 -15.46212 -15.30342 -15.17358 -14.81165 -14.35221 -14.09615 -13.98509 -13.62705 -13.24133 -13.06093 -12.98100 -12.62253 -12.56541 -12.44131 -12.22726 -12.11859 -11.96934 -11.79933 -11.76287 -11.34836 -11.21071 -11.12237 -10.72342 -10.53482 -10.37763 -9.31182 -8.67765 -7.87415 -5.32378 0.63219 1.46877 1.48617 1.58553 2.45863 2.52083 3.12849 3.29613 3.55779 3.69758 3.75047 3.77005 4.02746 4.11527 4.31035 4.45366 4.48270 4.56612 4.69895 4.72333 4.76728 4.77822 4.81081 4.85410 4.90353 4.99925 5.03971 5.12506 5.17046 5.23769 5.27287 5.42807 5.54338 5.65615 5.74778 6.15248 6.40061 6.51273 7.15612 7.87131 8.38658 9.19213 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.046757 B = 0.002395 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.698382 B =11687.674343 C =11836.741783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 Br -0.134 7.134 4 C -0.137 4.137 5 C -0.119 4.119 6 H 0.113 0.887 7 C 0.094 3.906 8 N -0.684 5.684 9 C 0.108 3.892 10 C -0.103 4.103 11 C 0.140 3.860 12 N -0.611 5.611 13 C -0.263 4.263 14 H 0.065 0.935 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.180 3.820 22 C -0.127 4.127 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.108 0.892 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.344 0.656 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.012 0.988 35 H 0.054 0.946 36 H 0.250 0.750 37 H -0.005 1.005 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 20.013 15.420 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.173 4.173 3 Br -0.053 7.053 4 C -0.175 4.175 5 C -0.139 4.139 6 H 0.131 0.869 7 C -0.035 4.035 8 N -0.315 5.315 9 C -0.002 4.002 10 C -0.142 4.142 11 C 0.014 3.986 12 N -0.335 5.335 13 C -0.393 4.393 14 H 0.083 0.917 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.795 3.205 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.196 1.196 21 C 0.054 3.946 22 C -0.167 4.167 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.126 0.874 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.163 0.837 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.632 20.197 15.811 25.785 hybrid contribution -0.292 -0.653 -1.450 1.616 sum 2.341 19.544 14.361 24.366 Atomic orbital electron populations 1.21513 0.88338 1.03960 1.03284 1.25093 0.96920 0.84310 1.10977 1.97354 1.82323 1.26427 1.99146 1.23610 1.02449 0.97496 0.93935 1.22605 1.00349 0.95706 0.95198 0.86914 1.21546 0.93547 0.91636 0.96805 1.60486 1.23765 1.16787 1.30473 1.21209 0.94123 0.92106 0.92715 1.21811 0.99756 0.95213 0.97454 1.21080 0.93400 0.96528 0.87575 1.44331 1.67792 1.02379 1.18997 1.19514 1.41998 0.86183 0.91640 0.91704 1.25801 1.00957 1.01305 0.96602 1.70179 1.48273 1.39962 0.99779 0.85290 0.78468 0.79810 0.76970 1.21077 1.21820 1.19578 1.20528 0.94526 0.87716 0.91863 1.22161 0.99155 0.98670 0.96682 0.89798 0.90742 0.91389 0.86258 0.87383 0.94621 0.90226 0.83746 0.94939 0.92839 0.90795 0.97012 0.92786 0.94106 0.98736 0.92811 0.91498 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 8.92 71.98 0.64 -0.87 16 2 C -0.10 -1.48 3.11 -10.79 -0.03 -1.52 16 3 Br -0.13 -2.37 33.94 -20.37 -0.69 -3.06 16 4 C -0.14 -1.99 9.64 30.60 0.29 -1.70 16 5 C -0.12 -2.01 5.77 -10.79 -0.06 -2.08 16 6 H 0.11 2.04 8.13 -2.39 -0.02 2.02 16 7 C 0.09 1.85 4.84 86.30 0.42 2.27 16 8 N -0.68 -16.88 6.31 -491.42 -3.10 -19.98 16 9 C 0.11 3.38 2.46 44.94 0.11 3.49 16 10 C -0.10 -3.43 5.59 30.67 0.17 -3.25 16 11 C 0.14 5.82 6.52 86.36 0.56 6.38 16 12 N -0.61 -31.06 2.99 -699.12 -2.09 -33.15 16 13 C -0.26 -14.67 9.58 84.03 0.81 -13.86 16 14 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 15 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 16 N -0.94 -55.71 11.19 21.65 0.24 -55.47 16 17 Si 0.97 45.12 29.59 68.60 2.03 47.15 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C 0.18 8.71 5.30 86.36 0.46 9.17 16 22 C -0.13 -4.69 5.36 30.67 0.16 -4.53 16 23 H 0.08 0.96 7.90 -2.38 -0.02 0.94 16 24 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 25 H 0.07 0.95 7.83 -2.39 -0.02 0.93 16 26 H 0.12 1.51 7.94 -2.39 -0.02 1.49 16 27 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 0.72 7.68 -2.39 -0.02 0.70 16 29 H 0.08 1.54 7.14 -2.39 -0.02 1.52 16 30 H 0.34 7.91 8.32 -89.70 -0.75 7.16 16 31 H 0.03 1.06 7.80 -2.38 -0.02 1.04 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.06 7.42 -2.39 -0.02 2.04 16 34 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 36 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 37 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.05 2.96 6.07 -2.39 -0.01 2.94 16 39 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -61.92 334.64 0.60 -61.32 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.26 Total: 12.17 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 3.95 Total: -8.98 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -4.95 Total: -108.60 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 35 Polarization: -2.37 SS G_CDS: -0.69 Total: -3.06 kcal Total: -61.92 0.60 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892908630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.336 kcal (2) G-P(sol) polarization free energy of solvation -61.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds