Wall clock time and date at job start Tue Mar 31 2020 11:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Br 1.96602 * 115.56436 * 2 1 4 4 C 1.53075 * 117.49132 * 214.29116 * 2 1 3 5 5 C 1.53004 * 59.98653 * 252.51116 * 4 2 1 6 6 H 1.09002 * 117.49655 * 107.49326 * 5 4 2 7 7 C 1.52992 * 117.50303 * 252.50102 * 5 4 2 8 8 N 1.46896 * 109.47130 * 243.74590 * 7 5 4 9 9 C 1.46898 * 111.00425 * 179.97438 * 8 7 5 10 10 C 1.53037 * 109.46396 * 204.99711 * 9 8 7 11 11 C 1.53192 * 109.31435 * 178.61390 * 10 9 8 12 12 N 1.46920 * 108.77594 * 54.63629 * 11 10 9 13 13 C 1.36941 * 120.63091 * 126.36627 * 12 11 10 14 14 H 1.07996 * 120.00020 * 331.91607 * 13 12 11 15 15 C 1.38812 * 119.99995 * 151.91200 * 13 12 11 16 16 N 1.31621 * 119.99722 * 343.22679 * 15 13 12 17 17 Si 1.86797 * 120.00136 * 163.22713 * 15 13 12 18 18 H 1.48501 * 109.46972 * 60.00030 * 17 15 13 19 19 H 1.48503 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47071 * 299.99984 * 17 15 13 21 21 C 1.46925 * 118.74076 * 306.64378 * 12 11 10 22 22 C 1.52773 * 109.00658 * 53.30659 * 21 12 11 23 23 H 1.09001 * 109.46807 * 274.31086 * 1 2 3 24 24 H 1.09003 * 109.46859 * 34.30553 * 1 2 3 25 25 H 1.08997 * 109.47538 * 154.30885 * 1 2 3 26 26 H 1.09001 * 117.51096 * 145.03853 * 4 2 1 27 27 H 1.08993 * 117.49356 * 359.97438 * 4 2 1 28 28 H 1.08997 * 109.47303 * 123.74344 * 7 5 4 29 29 H 1.09004 * 109.47042 * 3.74336 * 7 5 4 30 30 H 1.00905 * 111.00035 * 56.04203 * 8 7 5 31 31 H 1.08997 * 109.44745 * 324.96800 * 9 8 7 32 32 H 1.09005 * 109.49265 * 58.66456 * 10 9 8 33 33 H 1.09001 * 109.52613 * 298.58486 * 10 9 8 34 34 H 1.09003 * 109.58911 * 294.85153 * 11 10 9 35 35 H 1.08998 * 109.58829 * 174.42593 * 11 10 9 36 36 H 0.97006 * 119.99968 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.59235 * 173.13923 * 21 12 11 38 38 H 1.08998 * 109.58877 * 293.57299 * 21 12 11 39 39 H 1.08992 * 109.56036 * 185.55148 * 22 21 12 40 40 H 1.09000 * 109.37854 * 65.51557 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3784 1.7736 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 1.6112 -1.8583 1.2686 7 6 3.5490 -0.7760 1.4714 8 7 4.0108 -1.9385 2.2416 9 6 5.2721 -1.6436 2.9346 10 6 6.0318 -2.9477 3.1877 11 6 7.3620 -2.6331 3.8793 12 7 7.0909 -1.8478 5.0911 13 6 7.5747 -2.2516 6.3069 14 1 7.7478 -3.3003 6.4980 15 6 7.8426 -1.3128 7.2937 16 7 7.9538 -0.0398 6.9782 17 14 8.0455 -1.8561 9.0694 18 1 9.1767 -2.8132 9.1680 19 1 8.3229 -0.6715 9.9209 20 1 6.7975 -2.5155 9.5309 21 6 6.2856 -0.6245 4.9747 22 6 4.9720 -0.9586 4.2698 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4455 26 1 3.1718 -0.8766 -1.2683 27 1 1.6112 -1.8596 -1.2676 28 1 3.3887 0.0657 2.1451 29 1 4.3017 -0.5094 0.7295 30 1 4.1050 -2.7502 1.6496 31 1 5.8801 -0.9833 2.3163 32 1 6.2246 -3.4466 2.2379 33 1 5.4349 -3.5991 3.8262 34 1 7.9971 -2.0578 3.2056 35 1 7.8617 -3.5631 4.1507 36 1 8.1414 0.6162 7.6677 37 1 6.0751 -0.2294 5.9685 38 1 6.8310 0.1180 4.3920 39 1 4.4107 -0.0418 4.0904 40 1 4.3845 -1.6280 4.8982 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892908631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:38 Heat of formation + Delta-G solvation = 40.234382 kcal Electronic energy + Delta-G solvation = -18998.835469 eV Core-core repulsion = 16088.685475 eV Total energy + Delta-G solvation = -2910.149994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.80640 -37.66134 -34.80298 -32.17425 -30.36790 -29.93600 -29.66067 -28.62348 -25.80489 -24.07612 -22.20174 -21.43739 -20.97392 -19.94914 -18.94524 -16.69443 -16.06531 -15.26324 -14.82462 -14.61759 -14.06139 -13.91155 -13.61443 -13.45421 -13.39014 -12.92010 -12.49380 -12.40037 -12.09296 -11.73057 -11.59292 -11.35749 -11.12425 -10.90964 -10.84363 -10.66964 -10.41471 -10.21365 -10.15444 -9.96009 -9.86936 -9.65983 -9.50099 -9.41916 -8.43605 -8.13336 -6.62063 -5.74023 -3.16497 1.41212 3.17946 3.41812 3.47400 3.48982 3.98801 4.32535 4.44210 4.53885 4.74036 5.11622 5.24966 5.29886 5.36243 5.37800 5.39993 5.46922 5.51634 5.60412 5.72766 5.77384 5.82894 5.95061 6.02729 6.17855 6.37801 6.46569 6.65145 6.69243 6.80577 6.83559 7.03200 7.39201 7.45818 7.64805 7.74118 7.84367 8.50523 9.26480 9.90041 10.47098 11.34651 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.003021 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.653482 B = 9265.047415 C = 9754.888727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 Br -0.114 7.114 4 C -0.157 4.157 5 C -0.116 4.116 6 H 0.125 0.875 7 C 0.086 3.914 8 N -0.685 5.685 9 C 0.097 3.903 10 C -0.133 4.133 11 C 0.148 3.852 12 N -0.591 5.591 13 C -0.253 4.253 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.171 3.829 22 C -0.124 4.124 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.333 0.667 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.015 0.985 35 H 0.055 0.945 36 H 0.254 0.746 37 H 0.087 0.913 38 H 0.014 0.986 39 H 0.045 0.955 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 0.418 -17.914 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.176 4.176 3 Br -0.033 7.033 4 C -0.195 4.195 5 C -0.136 4.136 6 H 0.143 0.857 7 C -0.043 4.043 8 N -0.316 5.316 9 C -0.012 4.012 10 C -0.172 4.172 11 C 0.021 3.979 12 N -0.314 5.314 13 C -0.383 4.383 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.210 1.210 21 C 0.045 3.955 22 C -0.164 4.164 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.151 0.849 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.982 1.338 -17.242 22.880 hybrid contribution 0.541 -0.457 0.080 0.712 sum -14.441 0.881 -17.162 22.446 Atomic orbital electron populations 1.21474 0.89140 1.02958 1.03263 1.25001 0.96275 0.85538 1.10788 1.97376 1.82152 1.24665 1.99066 1.23609 1.02407 0.98319 0.95134 1.22794 0.99225 0.98273 0.93259 0.85711 1.21626 0.92390 0.94712 0.95578 1.60610 1.32838 1.05516 1.32609 1.21474 0.87507 0.96788 0.95413 1.22210 0.99237 0.96314 0.99470 1.20852 0.92565 0.95413 0.89067 1.44031 1.58403 1.26272 1.02730 1.19145 1.38011 0.91706 0.89400 0.91798 1.25041 0.99815 0.95708 0.99042 1.70031 1.51980 1.00701 1.32042 0.86372 0.78084 0.77369 0.84953 1.20927 1.21652 1.21009 1.20704 0.87135 0.87730 0.99970 1.22119 1.00407 0.98733 0.95135 0.91047 0.91209 0.91097 0.87808 0.87576 0.89830 0.94901 0.84931 0.94673 0.93563 0.91496 0.96711 0.92692 0.93630 0.89457 0.96792 0.93674 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.92 37.16 0.37 -0.45 16 2 C -0.10 -0.91 3.10 -90.58 -0.28 -1.19 16 3 Br -0.11 -1.27 32.66 -68.01 -2.22 -3.49 16 4 C -0.16 -1.29 9.65 -26.69 -0.26 -1.55 16 5 C -0.12 -1.15 5.67 -90.62 -0.51 -1.67 16 6 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 7 C 0.09 1.10 4.72 -3.83 -0.02 1.08 16 8 N -0.69 -9.72 6.31 -106.69 -0.67 -10.39 16 9 C 0.10 1.68 2.46 -67.67 -0.17 1.51 16 10 C -0.13 -2.32 5.36 -26.61 -0.14 -2.47 16 11 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 12 N -0.59 -15.15 3.00 -172.58 -0.52 -15.67 16 13 C -0.25 -7.07 9.58 -15.06 -0.14 -7.21 16 14 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 16 N -0.90 -26.64 11.20 55.49 0.62 -26.02 16 17 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.17 4.20 5.27 -3.93 -0.02 4.18 16 22 C -0.12 -2.50 5.57 -26.83 -0.15 -2.65 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 25 H 0.07 0.42 7.90 -51.93 -0.41 0.01 16 26 H 0.10 0.90 8.03 -51.93 -0.42 0.48 16 27 H 0.11 0.69 8.05 -51.93 -0.42 0.27 16 28 H 0.08 1.22 7.17 -51.93 -0.37 0.84 16 29 H 0.03 0.43 7.79 -51.93 -0.40 0.03 16 30 H 0.33 4.18 8.33 -39.29 -0.33 3.85 16 31 H 0.04 0.64 7.80 -51.93 -0.40 0.24 16 32 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 37 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.04 0.86 7.42 -51.93 -0.39 0.47 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -29.43 334.57 -11.01 -40.43 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.79 Total: 0.46 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.43 Total: -7.30 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.57 Total: -52.08 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Atomic # 35 Polarization: -1.27 SS G_CDS: -2.22 Total: -3.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.43 -11.01 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892908631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.666 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds