Wall clock time and date at job start Tue Mar 31 2020 11:37:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 Br 1.96602 * 115.56436 * 2 1
4 4 C 1.53075 * 117.49132 * 214.29116 * 2 1 3
5 5 C 1.53004 * 59.98653 * 252.51116 * 4 2 1
6 6 H 1.09002 * 117.49655 * 107.49326 * 5 4 2
7 7 C 1.52992 * 117.50303 * 252.50102 * 5 4 2
8 8 N 1.46896 * 109.47130 * 243.74590 * 7 5 4
9 9 C 1.46898 * 111.00425 * 179.97438 * 8 7 5
10 10 C 1.53037 * 109.46396 * 204.99711 * 9 8 7
11 11 C 1.53192 * 109.31435 * 178.61390 * 10 9 8
12 12 N 1.46920 * 108.77594 * 54.63629 * 11 10 9
13 13 C 1.36941 * 120.63091 * 126.36627 * 12 11 10
14 14 H 1.07996 * 120.00020 * 331.91607 * 13 12 11
15 15 C 1.38812 * 119.99995 * 151.91200 * 13 12 11
16 16 N 1.31621 * 119.99722 * 343.22679 * 15 13 12
17 17 Si 1.86797 * 120.00136 * 163.22713 * 15 13 12
18 18 H 1.48501 * 109.46972 * 60.00030 * 17 15 13
19 19 H 1.48503 * 109.47012 * 180.02562 * 17 15 13
20 20 H 1.48501 * 109.47071 * 299.99984 * 17 15 13
21 21 C 1.46925 * 118.74076 * 306.64378 * 12 11 10
22 22 C 1.52773 * 109.00658 * 53.30659 * 21 12 11
23 23 H 1.09001 * 109.46807 * 274.31086 * 1 2 3
24 24 H 1.09003 * 109.46859 * 34.30553 * 1 2 3
25 25 H 1.08997 * 109.47538 * 154.30885 * 1 2 3
26 26 H 1.09001 * 117.51096 * 145.03853 * 4 2 1
27 27 H 1.08993 * 117.49356 * 359.97438 * 4 2 1
28 28 H 1.08997 * 109.47303 * 123.74344 * 7 5 4
29 29 H 1.09004 * 109.47042 * 3.74336 * 7 5 4
30 30 H 1.00905 * 111.00035 * 56.04203 * 8 7 5
31 31 H 1.08997 * 109.44745 * 324.96800 * 9 8 7
32 32 H 1.09005 * 109.49265 * 58.66456 * 10 9 8
33 33 H 1.09001 * 109.52613 * 298.58486 * 10 9 8
34 34 H 1.09003 * 109.58911 * 294.85153 * 11 10 9
35 35 H 1.08998 * 109.58829 * 174.42593 * 11 10 9
36 36 H 0.97006 * 119.99968 * 180.02562 * 16 15 13
37 37 H 1.09001 * 109.59235 * 173.13923 * 21 12 11
38 38 H 1.08998 * 109.58877 * 293.57299 * 21 12 11
39 39 H 1.08992 * 109.56036 * 185.55148 * 22 21 12
40 40 H 1.09000 * 109.37854 * 65.51557 * 22 21 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 35 2.3784 1.7736 0.0000
4 6 2.2366 -1.1219 -0.7650
5 6 2.2365 -1.1210 0.7650
6 1 1.6112 -1.8583 1.2686
7 6 3.5490 -0.7760 1.4714
8 7 4.0108 -1.9385 2.2416
9 6 5.2721 -1.6436 2.9346
10 6 6.0318 -2.9477 3.1877
11 6 7.3620 -2.6331 3.8793
12 7 7.0909 -1.8478 5.0911
13 6 7.5747 -2.2516 6.3069
14 1 7.7478 -3.3003 6.4980
15 6 7.8426 -1.3128 7.2937
16 7 7.9538 -0.0398 6.9782
17 14 8.0455 -1.8561 9.0694
18 1 9.1767 -2.8132 9.1680
19 1 8.3229 -0.6715 9.9209
20 1 6.7975 -2.5155 9.5309
21 6 6.2856 -0.6245 4.9747
22 6 4.9720 -0.9586 4.2698
23 1 -0.3633 0.0772 1.0248
24 1 -0.3633 0.8489 -0.5792
25 1 -0.3634 -0.9260 -0.4455
26 1 3.1718 -0.8766 -1.2683
27 1 1.6112 -1.8596 -1.2676
28 1 3.3887 0.0657 2.1451
29 1 4.3017 -0.5094 0.7295
30 1 4.1050 -2.7502 1.6496
31 1 5.8801 -0.9833 2.3163
32 1 6.2246 -3.4466 2.2379
33 1 5.4349 -3.5991 3.8262
34 1 7.9971 -2.0578 3.2056
35 1 7.8617 -3.5631 4.1507
36 1 8.1414 0.6162 7.6677
37 1 6.0751 -0.2294 5.9685
38 1 6.8310 0.1180 4.3920
39 1 4.4107 -0.0418 4.0904
40 1 4.3845 -1.6280 4.8982
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000892908631.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:37:37
Heat of formation + Delta-G solvation = 23.109433 kcal
Electronic energy + Delta-G solvation = -18999.578062 eV
Core-core repulsion = 16088.685475 eV
Total energy + Delta-G solvation = -2910.892588 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 316.085 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-39.91015 -38.96252 -36.35535 -33.95845 -31.78139 -31.46905 -30.79641 -29.52723
-27.24163 -25.68820 -23.87588 -22.94384 -21.95568 -20.93113 -20.42172 -18.68160
-17.16925 -16.75410 -16.25432 -15.79046 -15.53539 -15.32076 -15.02645 -14.85646
-14.44477 -14.23719 -14.00959 -13.68336 -13.25536 -13.05795 -12.93615 -12.58607
-12.55484 -12.45836 -12.34552 -12.05146 -11.97869 -11.81242 -11.76968 -11.28659
-11.24137 -11.08132 -10.75342 -10.53925 -10.37936 -9.35788 -8.69114 -7.87331
-5.33230 0.68557 1.46759 1.50047 1.56621 2.45044 2.51891 3.02976
3.28737 3.59264 3.69291 3.74869 3.78686 3.99056 4.12637 4.28943
4.42649 4.49097 4.55269 4.70937 4.73817 4.77522 4.80586 4.81865
4.83250 4.90430 4.97809 5.03461 5.11493 5.19001 5.21711 5.23969
5.39967 5.52152 5.64457 5.74300 6.10830 6.39089 6.58257 7.14678
7.86128 8.38327 9.19406
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.026492 B = 0.003021 C = 0.002870
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.653482 B = 9265.047415 C = 9754.888727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.100 4.100
3 Br -0.141 7.141
4 C -0.138 4.138
5 C -0.122 4.122
6 H 0.133 0.867
7 C 0.091 3.909
8 N -0.680 5.680
9 C 0.107 3.893
10 C -0.118 4.118
11 C 0.142 3.858
12 N -0.611 5.611
13 C -0.266 4.266
14 H 0.068 0.932
15 C -0.052 4.052
16 N -0.937 5.937
17 Si 0.969 3.031
18 H -0.273 1.273
19 H -0.294 1.294
20 H -0.278 1.278
21 C 0.180 3.820
22 C -0.110 4.110
23 H 0.067 0.933
24 H 0.071 0.929
25 H 0.092 0.908
26 H 0.100 0.900
27 H 0.133 0.867
28 H 0.061 0.939
29 H 0.030 0.970
30 H 0.349 0.651
31 H 0.027 0.973
32 H 0.084 0.916
33 H 0.062 0.938
34 H 0.011 0.989
35 H 0.058 0.942
36 H 0.249 0.751
37 H 0.051 0.949
38 H -0.010 1.010
39 H 0.051 0.949
40 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.329 -1.486 -19.320 25.340
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.178 4.178
3 Br -0.060 7.060
4 C -0.176 4.176
5 C -0.142 4.142
6 H 0.151 0.849
7 C -0.038 4.038
8 N -0.311 5.311
9 C -0.002 4.002
10 C -0.158 4.158
11 C 0.016 3.984
12 N -0.334 5.334
13 C -0.396 4.396
14 H 0.086 0.914
15 C -0.247 4.247
16 N -0.583 5.583
17 Si 0.796 3.204
18 H -0.199 1.199
19 H -0.220 1.220
20 H -0.204 1.204
21 C 0.053 3.947
22 C -0.149 4.149
23 H 0.086 0.914
24 H 0.090 0.910
25 H 0.110 0.890
26 H 0.119 0.881
27 H 0.151 0.849
28 H 0.079 0.921
29 H 0.048 0.952
30 H 0.169 0.831
31 H 0.045 0.955
32 H 0.103 0.897
33 H 0.081 0.919
34 H 0.029 0.971
35 H 0.077 0.923
36 H 0.058 0.942
37 H 0.070 0.930
38 H 0.008 0.992
39 H 0.070 0.930
40 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -16.381 -0.600 -18.684 24.855
hybrid contribution 0.983 0.123 0.462 1.093
sum -15.399 -0.477 -18.222 23.862
Atomic orbital electron populations
1.21510 0.87584 1.04172 1.03376 1.25203 0.97270 0.84235 1.11073
1.97379 1.82711 1.26822 1.99087 1.23714 1.02450 0.97736 0.93679
1.22652 0.97989 0.99101 0.94456 0.84940 1.21540 0.93868 0.93441
0.94984 1.60432 1.30620 1.06644 1.33447 1.21193 0.88825 0.96277
0.93936 1.22027 0.96688 0.96349 1.00699 1.21043 0.94874 0.94779
0.87729 1.44304 1.58797 1.26706 1.03633 1.19519 1.37413 0.92002
0.90683 0.91422 1.25839 1.00126 0.95753 1.02962 1.70196 1.53412
1.01739 1.32907 0.85324 0.78291 0.76821 0.79920 1.19890 1.22035
1.20393 1.20459 0.88902 0.87222 0.98094 1.21862 0.97519 0.99198
0.96348 0.91366 0.91031 0.88977 0.88125 0.84902 0.92068 0.95161
0.83134 0.95476 0.89722 0.91941 0.97070 0.92306 0.94153 0.93021
0.99191 0.93012 0.93124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.33 9.92 71.98 0.71 -0.61 16
2 C -0.10 -1.64 3.10 -10.77 -0.03 -1.67 16
3 Br -0.14 -3.05 32.66 -20.37 -0.67 -3.71 16
4 C -0.14 -1.82 9.65 30.62 0.30 -1.53 16
5 C -0.12 -2.13 5.67 -10.79 -0.06 -2.19 16
6 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16
7 C 0.09 2.17 4.72 86.30 0.41 2.58 16
8 N -0.68 -17.72 6.31 -491.47 -3.10 -20.82 16
9 C 0.11 3.57 2.46 44.94 0.11 3.68 16
10 C -0.12 -3.89 5.36 30.67 0.16 -3.72 16
11 C 0.14 5.94 6.52 86.36 0.56 6.50 16
12 N -0.61 -31.75 3.00 -699.92 -2.10 -33.85 16
13 C -0.27 -15.04 9.58 84.03 0.81 -14.23 16
14 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16
15 C -0.05 -2.95 4.92 84.86 0.42 -2.54 16
16 N -0.94 -57.04 11.20 21.65 0.24 -56.79 16
17 Si 0.97 45.74 29.59 68.60 2.03 47.77 16
18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16
19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16
20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16
21 C 0.18 9.14 5.27 86.22 0.45 9.59 16
22 C -0.11 -4.44 5.57 30.53 0.17 -4.27 16
23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
24 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16
25 H 0.09 0.75 7.90 -2.39 -0.02 0.73 16
26 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16
27 H 0.13 1.10 8.05 -2.39 -0.02 1.08 16
28 H 0.06 1.75 7.17 -2.39 -0.02 1.73 16
29 H 0.03 0.74 7.79 -2.38 -0.02 0.73 16
30 H 0.35 7.51 8.33 -89.69 -0.75 6.77 16
31 H 0.03 0.96 7.80 -2.39 -0.02 0.95 16
32 H 0.08 2.17 8.10 -2.38 -0.02 2.15 16
33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16
34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16
35 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16
36 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16
37 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16
38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16
39 H 0.05 2.00 7.42 -2.39 -0.02 1.98 16
40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16
Total: -1.00 -64.95 334.57 0.68 -64.27
By element:
Atomic # 1 Polarization: 11.29 SS G_CDS: 0.26 Total: 11.55 kcal
Atomic # 6 Polarization: -12.42 SS G_CDS: 4.01 Total: -8.41 kcal
Atomic # 7 Polarization: -106.51 SS G_CDS: -4.96 Total: -111.46 kcal
Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal
Atomic # 35 Polarization: -3.05 SS G_CDS: -0.67 Total: -3.71 kcal
Total: -64.95 0.68 -64.27 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892908631.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.378 kcal
(2) G-P(sol) polarization free energy of solvation -64.945 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.433 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.269 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.109 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds