Wall clock time and date at job start Tue Mar 31 2020 11:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Br 1.96602 * 115.56436 * 2 1 4 4 C 1.53075 * 117.49132 * 214.29116 * 2 1 3 5 5 C 1.53004 * 59.98653 * 252.51116 * 4 2 1 6 6 H 1.09002 * 117.49655 * 107.49326 * 5 4 2 7 7 C 1.52992 * 117.50303 * 252.50102 * 5 4 2 8 8 N 1.46896 * 109.47130 * 243.74590 * 7 5 4 9 9 C 1.46898 * 111.00425 * 179.97438 * 8 7 5 10 10 C 1.53037 * 109.46396 * 204.99711 * 9 8 7 11 11 C 1.53192 * 109.31435 * 178.61390 * 10 9 8 12 12 N 1.46920 * 108.77594 * 54.63629 * 11 10 9 13 13 C 1.36941 * 120.63091 * 126.36627 * 12 11 10 14 14 H 1.07996 * 120.00020 * 331.91607 * 13 12 11 15 15 C 1.38812 * 119.99995 * 151.91200 * 13 12 11 16 16 N 1.31621 * 119.99722 * 343.22679 * 15 13 12 17 17 Si 1.86797 * 120.00136 * 163.22713 * 15 13 12 18 18 H 1.48501 * 109.46972 * 60.00030 * 17 15 13 19 19 H 1.48503 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47071 * 299.99984 * 17 15 13 21 21 C 1.46925 * 118.74076 * 306.64378 * 12 11 10 22 22 C 1.52773 * 109.00658 * 53.30659 * 21 12 11 23 23 H 1.09001 * 109.46807 * 274.31086 * 1 2 3 24 24 H 1.09003 * 109.46859 * 34.30553 * 1 2 3 25 25 H 1.08997 * 109.47538 * 154.30885 * 1 2 3 26 26 H 1.09001 * 117.51096 * 145.03853 * 4 2 1 27 27 H 1.08993 * 117.49356 * 359.97438 * 4 2 1 28 28 H 1.08997 * 109.47303 * 123.74344 * 7 5 4 29 29 H 1.09004 * 109.47042 * 3.74336 * 7 5 4 30 30 H 1.00905 * 111.00035 * 56.04203 * 8 7 5 31 31 H 1.08997 * 109.44745 * 324.96800 * 9 8 7 32 32 H 1.09005 * 109.49265 * 58.66456 * 10 9 8 33 33 H 1.09001 * 109.52613 * 298.58486 * 10 9 8 34 34 H 1.09003 * 109.58911 * 294.85153 * 11 10 9 35 35 H 1.08998 * 109.58829 * 174.42593 * 11 10 9 36 36 H 0.97006 * 119.99968 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.59235 * 173.13923 * 21 12 11 38 38 H 1.08998 * 109.58877 * 293.57299 * 21 12 11 39 39 H 1.08992 * 109.56036 * 185.55148 * 22 21 12 40 40 H 1.09000 * 109.37854 * 65.51557 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3784 1.7736 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 1.6112 -1.8583 1.2686 7 6 3.5490 -0.7760 1.4714 8 7 4.0108 -1.9385 2.2416 9 6 5.2721 -1.6436 2.9346 10 6 6.0318 -2.9477 3.1877 11 6 7.3620 -2.6331 3.8793 12 7 7.0909 -1.8478 5.0911 13 6 7.5747 -2.2516 6.3069 14 1 7.7478 -3.3003 6.4980 15 6 7.8426 -1.3128 7.2937 16 7 7.9538 -0.0398 6.9782 17 14 8.0455 -1.8561 9.0694 18 1 9.1767 -2.8132 9.1680 19 1 8.3229 -0.6715 9.9209 20 1 6.7975 -2.5155 9.5309 21 6 6.2856 -0.6245 4.9747 22 6 4.9720 -0.9586 4.2698 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4455 26 1 3.1718 -0.8766 -1.2683 27 1 1.6112 -1.8596 -1.2676 28 1 3.3887 0.0657 2.1451 29 1 4.3017 -0.5094 0.7295 30 1 4.1050 -2.7502 1.6496 31 1 5.8801 -0.9833 2.3163 32 1 6.2246 -3.4466 2.2379 33 1 5.4349 -3.5991 3.8262 34 1 7.9971 -2.0578 3.2056 35 1 7.8617 -3.5631 4.1507 36 1 8.1414 0.6162 7.6677 37 1 6.0751 -0.2294 5.9685 38 1 6.8310 0.1180 4.3920 39 1 4.4107 -0.0418 4.0904 40 1 4.3845 -1.6280 4.8982 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892908631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:37 Heat of formation + Delta-G solvation = 23.109433 kcal Electronic energy + Delta-G solvation = -18999.578062 eV Core-core repulsion = 16088.685475 eV Total energy + Delta-G solvation = -2910.892588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 316.085 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91015 -38.96252 -36.35535 -33.95845 -31.78139 -31.46905 -30.79641 -29.52723 -27.24163 -25.68820 -23.87588 -22.94384 -21.95568 -20.93113 -20.42172 -18.68160 -17.16925 -16.75410 -16.25432 -15.79046 -15.53539 -15.32076 -15.02645 -14.85646 -14.44477 -14.23719 -14.00959 -13.68336 -13.25536 -13.05795 -12.93615 -12.58607 -12.55484 -12.45836 -12.34552 -12.05146 -11.97869 -11.81242 -11.76968 -11.28659 -11.24137 -11.08132 -10.75342 -10.53925 -10.37936 -9.35788 -8.69114 -7.87331 -5.33230 0.68557 1.46759 1.50047 1.56621 2.45044 2.51891 3.02976 3.28737 3.59264 3.69291 3.74869 3.78686 3.99056 4.12637 4.28943 4.42649 4.49097 4.55269 4.70937 4.73817 4.77522 4.80586 4.81865 4.83250 4.90430 4.97809 5.03461 5.11493 5.19001 5.21711 5.23969 5.39967 5.52152 5.64457 5.74300 6.10830 6.39089 6.58257 7.14678 7.86128 8.38327 9.19406 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.003021 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.653482 B = 9265.047415 C = 9754.888727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 Br -0.141 7.141 4 C -0.138 4.138 5 C -0.122 4.122 6 H 0.133 0.867 7 C 0.091 3.909 8 N -0.680 5.680 9 C 0.107 3.893 10 C -0.118 4.118 11 C 0.142 3.858 12 N -0.611 5.611 13 C -0.266 4.266 14 H 0.068 0.932 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.969 3.031 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.278 1.278 21 C 0.180 3.820 22 C -0.110 4.110 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.133 0.867 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.349 0.651 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.011 0.989 35 H 0.058 0.942 36 H 0.249 0.751 37 H 0.051 0.949 38 H -0.010 1.010 39 H 0.051 0.949 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.329 -1.486 -19.320 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 Br -0.060 7.060 4 C -0.176 4.176 5 C -0.142 4.142 6 H 0.151 0.849 7 C -0.038 4.038 8 N -0.311 5.311 9 C -0.002 4.002 10 C -0.158 4.158 11 C 0.016 3.984 12 N -0.334 5.334 13 C -0.396 4.396 14 H 0.086 0.914 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.796 3.204 18 H -0.199 1.199 19 H -0.220 1.220 20 H -0.204 1.204 21 C 0.053 3.947 22 C -0.149 4.149 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.169 0.831 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.008 0.992 39 H 0.070 0.930 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.381 -0.600 -18.684 24.855 hybrid contribution 0.983 0.123 0.462 1.093 sum -15.399 -0.477 -18.222 23.862 Atomic orbital electron populations 1.21510 0.87584 1.04172 1.03376 1.25203 0.97270 0.84235 1.11073 1.97379 1.82711 1.26822 1.99087 1.23714 1.02450 0.97736 0.93679 1.22652 0.97989 0.99101 0.94456 0.84940 1.21540 0.93868 0.93441 0.94984 1.60432 1.30620 1.06644 1.33447 1.21193 0.88825 0.96277 0.93936 1.22027 0.96688 0.96349 1.00699 1.21043 0.94874 0.94779 0.87729 1.44304 1.58797 1.26706 1.03633 1.19519 1.37413 0.92002 0.90683 0.91422 1.25839 1.00126 0.95753 1.02962 1.70196 1.53412 1.01739 1.32907 0.85324 0.78291 0.76821 0.79920 1.19890 1.22035 1.20393 1.20459 0.88902 0.87222 0.98094 1.21862 0.97519 0.99198 0.96348 0.91366 0.91031 0.88977 0.88125 0.84902 0.92068 0.95161 0.83134 0.95476 0.89722 0.91941 0.97070 0.92306 0.94153 0.93021 0.99191 0.93012 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.92 71.98 0.71 -0.61 16 2 C -0.10 -1.64 3.10 -10.77 -0.03 -1.67 16 3 Br -0.14 -3.05 32.66 -20.37 -0.67 -3.71 16 4 C -0.14 -1.82 9.65 30.62 0.30 -1.53 16 5 C -0.12 -2.13 5.67 -10.79 -0.06 -2.19 16 6 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 7 C 0.09 2.17 4.72 86.30 0.41 2.58 16 8 N -0.68 -17.72 6.31 -491.47 -3.10 -20.82 16 9 C 0.11 3.57 2.46 44.94 0.11 3.68 16 10 C -0.12 -3.89 5.36 30.67 0.16 -3.72 16 11 C 0.14 5.94 6.52 86.36 0.56 6.50 16 12 N -0.61 -31.75 3.00 -699.92 -2.10 -33.85 16 13 C -0.27 -15.04 9.58 84.03 0.81 -14.23 16 14 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 15 C -0.05 -2.95 4.92 84.86 0.42 -2.54 16 16 N -0.94 -57.04 11.20 21.65 0.24 -56.79 16 17 Si 0.97 45.74 29.59 68.60 2.03 47.77 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 C 0.18 9.14 5.27 86.22 0.45 9.59 16 22 C -0.11 -4.44 5.57 30.53 0.17 -4.27 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 25 H 0.09 0.75 7.90 -2.39 -0.02 0.73 16 26 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16 27 H 0.13 1.10 8.05 -2.39 -0.02 1.08 16 28 H 0.06 1.75 7.17 -2.39 -0.02 1.73 16 29 H 0.03 0.74 7.79 -2.38 -0.02 0.73 16 30 H 0.35 7.51 8.33 -89.69 -0.75 6.77 16 31 H 0.03 0.96 7.80 -2.39 -0.02 0.95 16 32 H 0.08 2.17 8.10 -2.38 -0.02 2.15 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 36 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 37 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.05 2.00 7.42 -2.39 -0.02 1.98 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -64.95 334.57 0.68 -64.27 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.26 Total: 11.55 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 4.01 Total: -8.41 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.96 Total: -111.46 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 35 Polarization: -3.05 SS G_CDS: -0.67 Total: -3.71 kcal Total: -64.95 0.68 -64.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892908631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.378 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds