Wall clock time and date at job start Tue Mar 31 2020 11:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36115 * 120.00068 * 2 1 4 4 H 1.08005 * 119.99987 * 143.91649 * 3 2 1 5 5 C 1.39590 * 120.00041 * 323.91521 * 3 2 1 6 6 N 1.31011 * 119.99690 * 169.00431 * 5 3 2 7 7 Si 1.86801 * 119.99882 * 348.99877 * 5 3 2 8 8 H 1.48499 * 109.47014 * 89.11617 * 7 5 3 9 9 H 1.48497 * 109.47052 * 209.11477 * 7 5 3 10 10 H 1.48497 * 109.47157 * 329.11787 * 7 5 3 11 11 C 1.34776 * 120.00079 * 179.97438 * 2 1 3 12 12 O 1.21514 * 120.00409 * 175.08809 * 11 2 1 13 13 C 1.48740 * 120.00054 * 355.08546 * 11 2 1 14 14 O 1.21473 * 119.99784 * 5.17244 * 13 11 2 15 15 N 1.34777 * 120.00262 * 185.17358 * 13 11 2 16 16 C 1.39713 * 119.99948 * 185.40357 * 15 13 11 17 17 C 1.38957 * 120.08000 * 34.59134 * 16 15 13 18 18 C 1.38072 * 119.92340 * 179.97438 * 17 16 15 19 19 C 1.38311 * 120.08079 * 0.24996 * 18 17 16 20 20 C 1.38273 * 120.14867 * 359.49508 * 19 18 17 21 21 C 1.50702 * 119.96253 * 180.23411 * 20 19 18 22 22 F 1.39909 * 109.46977 * 270.27195 * 21 20 19 23 23 F 1.39896 * 109.47252 * 30.26843 * 21 20 19 24 24 F 1.39903 * 109.47315 * 150.27614 * 21 20 19 25 25 C 1.38121 * 120.08025 * 0.50752 * 20 19 18 26 26 H 1.08996 * 109.47278 * 238.98036 * 1 2 3 27 27 H 1.09004 * 109.46986 * 358.98650 * 1 2 3 28 28 H 1.09006 * 109.47105 * 118.97766 * 1 2 3 29 29 H 0.97007 * 119.99495 * 179.97438 * 6 5 3 30 30 H 0.96998 * 119.99660 * 5.39704 * 15 13 11 31 31 H 1.08000 * 120.03149 * 359.97438 * 17 16 15 32 32 H 1.08005 * 119.96127 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.92350 * 179.72269 * 19 18 17 34 34 H 1.07995 * 120.04389 * 179.76632 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1455 1.1788 0.0000 4 1 3.0702 1.2685 0.5509 5 6 1.6485 2.2717 -0.7120 6 7 2.1769 3.4586 -0.5432 7 14 0.2300 2.0419 -1.9056 8 1 -1.0566 2.2183 -1.1852 9 1 0.3303 3.0480 -2.9931 10 1 0.2886 0.6768 -2.4871 11 6 2.1388 -1.1672 0.0005 12 8 3.3506 -1.1692 -0.0896 13 6 1.3993 -2.4529 0.1114 14 8 0.1846 -2.4572 0.1069 15 7 2.0768 -3.6132 0.2170 16 6 1.3872 -4.8282 0.2075 17 6 0.2450 -4.9747 -0.5703 18 6 -0.4337 -6.1770 -0.5777 19 6 0.0190 -7.2334 0.1919 20 6 1.1581 -7.0928 0.9629 21 6 1.6506 -8.2483 1.7957 22 9 1.0618 -8.1936 3.0637 23 9 1.3056 -9.4525 1.1729 24 9 3.0416 -8.1713 1.9239 25 6 1.8421 -5.8929 0.9752 26 1 -0.3633 -0.5296 0.8807 27 1 -0.3633 1.0275 0.0182 28 1 -0.3633 -0.4979 -0.8991 29 1 1.8317 4.2180 -1.0383 30 1 3.0433 -3.6046 0.2995 31 1 -0.1113 -4.1489 -1.1682 32 1 -1.3218 -6.2914 -1.1816 33 1 -0.5164 -8.1713 0.1876 34 1 2.7296 -5.7826 1.5805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906469855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:22 Heat of formation + Delta-G solvation = -165.222585 kcal Electronic energy + Delta-G solvation = -25825.834538 eV Core-core repulsion = 21310.112867 eV Total energy + Delta-G solvation = -4515.721671 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.36528 -47.88621 -47.82028 -40.77594 -39.24183 -37.62109 -35.63021 -34.48581 -32.31214 -32.08060 -30.07160 -26.73723 -26.30833 -26.22058 -23.81747 -22.77127 -21.62980 -19.80432 -18.79111 -18.68232 -18.51051 -17.44416 -17.17829 -16.63100 -16.28744 -15.91209 -15.56508 -15.23508 -14.89491 -14.71557 -14.48399 -14.30893 -14.15637 -13.98838 -13.97300 -13.87240 -13.64016 -13.08271 -12.87974 -12.80035 -12.50297 -12.34440 -12.17643 -12.04037 -11.63292 -10.86140 -10.73394 -10.54464 -10.32994 -10.07429 -9.43671 -9.38869 -8.56174 -8.39404 -8.04599 -6.68217 -4.25090 0.71794 0.92258 2.03423 2.40473 2.86870 2.93907 3.09314 3.11124 3.30046 3.50419 3.83304 3.89466 3.95316 4.21422 4.29233 4.58810 4.75505 4.80439 4.93195 5.07648 5.13600 5.32310 5.44647 5.82042 5.88594 5.99900 6.08324 6.12514 6.18533 6.40476 6.67989 7.11384 7.28676 7.83764 8.01161 8.27675 8.61106 8.95695 9.39321 10.40938 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.031791 B = 0.002993 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.529293 B = 9352.290170 C = 9864.198178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.408 5.408 3 C -0.316 4.316 4 H 0.116 0.884 5 C 0.062 3.938 6 N -0.843 5.843 7 Si 0.896 3.104 8 H -0.269 1.269 9 H -0.285 1.285 10 H -0.261 1.261 11 C 0.419 3.581 12 O -0.561 6.561 13 C 0.511 3.489 14 O -0.517 6.517 15 N -0.657 5.657 16 C 0.161 3.839 17 C -0.091 4.091 18 C -0.099 4.099 19 C -0.094 4.094 20 C -0.165 4.165 21 C 0.511 3.489 22 F -0.176 7.176 23 F -0.178 7.178 24 F -0.177 7.177 25 C -0.102 4.102 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.282 0.718 30 H 0.424 0.576 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 -20.120 1.010 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.127 5.127 3 C -0.444 4.444 4 H 0.133 0.867 5 C -0.148 4.148 6 N -0.478 5.478 7 Si 0.723 3.277 8 H -0.195 1.195 9 H -0.212 1.212 10 H -0.186 1.186 11 C 0.205 3.795 12 O -0.446 6.446 13 C 0.297 3.703 14 O -0.391 6.391 15 N -0.304 5.304 16 C 0.066 3.934 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.167 4.167 21 C 0.457 3.543 22 F -0.158 7.158 23 F -0.159 7.159 24 F -0.158 7.158 25 C -0.123 4.123 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.263 0.737 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.835 -19.818 0.931 20.680 hybrid contribution -0.187 -0.136 -0.349 0.418 sum -6.022 -19.954 0.582 20.851 Atomic orbital electron populations 1.22421 0.81739 1.02023 1.02673 1.43343 1.05340 1.05048 1.58992 1.19293 1.09818 0.84671 1.30655 0.86659 1.25579 0.98193 0.94755 0.96292 1.69472 1.40416 0.99380 1.38513 0.86766 0.81224 0.79044 0.80700 1.19532 1.21199 1.18550 1.19134 0.88001 0.83396 0.89008 1.90665 1.12937 1.85815 1.55172 1.21048 0.87734 0.85736 0.75796 1.90710 1.13815 1.87335 1.47274 1.43323 1.11989 1.03105 1.71976 1.17630 0.94519 0.85681 0.95577 1.21487 0.94543 0.98286 0.96849 1.21024 0.99976 0.91855 0.98855 1.20876 0.94596 0.99964 0.95827 1.19640 1.00172 0.93820 1.03067 1.18263 0.75254 0.82416 0.78399 1.93235 1.83915 1.96486 1.42143 1.93182 1.91945 1.48361 1.82414 1.93198 1.30252 1.96314 1.96043 1.20644 1.01336 0.91693 0.98611 0.90923 0.90929 0.91963 0.90700 0.73740 0.83769 0.84420 0.84732 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 6.71 59.84 0.40 1.52 16 2 N -0.41 -9.82 2.66 -123.00 -0.33 -10.15 16 3 C -0.32 -8.58 9.45 -15.15 -0.14 -8.72 16 4 H 0.12 3.45 7.92 -52.48 -0.42 3.04 16 5 C 0.06 1.62 5.34 -17.40 -0.09 1.53 16 6 N -0.84 -22.98 13.94 55.53 0.77 -22.21 16 7 Si 0.90 19.72 24.34 -169.99 -4.14 15.58 16 8 H -0.27 -5.49 6.61 56.52 0.37 -5.12 16 9 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.26 -5.74 6.52 56.52 0.37 -5.37 16 11 C 0.42 9.59 7.66 -11.92 -0.09 9.49 16 12 O -0.56 -14.12 16.37 5.35 0.09 -14.03 16 13 C 0.51 9.58 7.51 -11.92 -0.09 9.49 16 14 O -0.52 -9.79 11.01 5.39 0.06 -9.73 16 15 N -0.66 -10.01 5.31 -10.47 -0.06 -10.06 16 16 C 0.16 2.16 6.25 -83.75 -0.52 1.64 16 17 C -0.09 -1.16 8.65 -39.38 -0.34 -1.50 16 18 C -0.10 -0.98 10.04 -39.62 -0.40 -1.38 16 19 C -0.09 -0.90 9.40 -39.54 -0.37 -1.27 16 20 C -0.17 -1.77 5.45 -104.65 -0.57 -2.34 16 21 C 0.51 5.31 3.36 36.01 0.12 5.43 16 22 F -0.18 -1.95 17.30 2.25 0.04 -1.91 16 23 F -0.18 -1.78 16.47 2.25 0.04 -1.75 16 24 F -0.18 -1.90 16.46 2.25 0.04 -1.86 16 25 C -0.10 -1.18 9.32 -39.37 -0.37 -1.55 16 26 H 0.07 1.39 7.00 -51.93 -0.36 1.02 16 27 H 0.07 1.50 4.35 -51.93 -0.23 1.27 16 28 H 0.06 1.23 6.43 -51.93 -0.33 0.90 16 29 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 30 H 0.42 5.92 8.31 -40.82 -0.34 5.58 16 31 H 0.14 1.99 6.51 -52.49 -0.34 1.65 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.13 1.00 7.60 -52.49 -0.40 0.60 16 34 H 0.14 1.42 7.60 -52.49 -0.40 1.02 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -29.35 305.32 -3.79 -33.13 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.44 Total: 6.05 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -2.46 Total: 12.34 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.39 Total: -42.42 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.15 Total: -23.76 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.11 Total: -5.52 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.14 Total: 15.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.35 -3.79 -33.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906469855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.089 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds