Wall clock time and date at job start Tue Mar 31 2020 11:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36115 * 120.00068 * 2 1 4 4 H 1.08005 * 119.99987 * 143.91649 * 3 2 1 5 5 C 1.39590 * 120.00041 * 323.91521 * 3 2 1 6 6 N 1.31011 * 119.99690 * 169.00431 * 5 3 2 7 7 Si 1.86801 * 119.99882 * 348.99877 * 5 3 2 8 8 H 1.48499 * 109.47014 * 89.11617 * 7 5 3 9 9 H 1.48497 * 109.47052 * 209.11477 * 7 5 3 10 10 H 1.48497 * 109.47157 * 329.11787 * 7 5 3 11 11 C 1.34776 * 120.00079 * 179.97438 * 2 1 3 12 12 O 1.21514 * 120.00409 * 175.08809 * 11 2 1 13 13 C 1.48740 * 120.00054 * 355.08546 * 11 2 1 14 14 O 1.21473 * 119.99784 * 5.17244 * 13 11 2 15 15 N 1.34777 * 120.00262 * 185.17358 * 13 11 2 16 16 C 1.39713 * 119.99948 * 185.40357 * 15 13 11 17 17 C 1.38957 * 120.08000 * 34.59134 * 16 15 13 18 18 C 1.38072 * 119.92340 * 179.97438 * 17 16 15 19 19 C 1.38311 * 120.08079 * 0.24996 * 18 17 16 20 20 C 1.38273 * 120.14867 * 359.49508 * 19 18 17 21 21 C 1.50702 * 119.96253 * 180.23411 * 20 19 18 22 22 F 1.39909 * 109.46977 * 270.27195 * 21 20 19 23 23 F 1.39896 * 109.47252 * 30.26843 * 21 20 19 24 24 F 1.39903 * 109.47315 * 150.27614 * 21 20 19 25 25 C 1.38121 * 120.08025 * 0.50752 * 20 19 18 26 26 H 1.08996 * 109.47278 * 238.98036 * 1 2 3 27 27 H 1.09004 * 109.46986 * 358.98650 * 1 2 3 28 28 H 1.09006 * 109.47105 * 118.97766 * 1 2 3 29 29 H 0.97007 * 119.99495 * 179.97438 * 6 5 3 30 30 H 0.96998 * 119.99660 * 5.39704 * 15 13 11 31 31 H 1.08000 * 120.03149 * 359.97438 * 17 16 15 32 32 H 1.08005 * 119.96127 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.92350 * 179.72269 * 19 18 17 34 34 H 1.07995 * 120.04389 * 179.76632 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1455 1.1788 0.0000 4 1 3.0702 1.2685 0.5509 5 6 1.6485 2.2717 -0.7120 6 7 2.1769 3.4586 -0.5432 7 14 0.2300 2.0419 -1.9056 8 1 -1.0566 2.2183 -1.1852 9 1 0.3303 3.0480 -2.9931 10 1 0.2886 0.6768 -2.4871 11 6 2.1388 -1.1672 0.0005 12 8 3.3506 -1.1692 -0.0896 13 6 1.3993 -2.4529 0.1114 14 8 0.1846 -2.4572 0.1069 15 7 2.0768 -3.6132 0.2170 16 6 1.3872 -4.8282 0.2075 17 6 0.2450 -4.9747 -0.5703 18 6 -0.4337 -6.1770 -0.5777 19 6 0.0190 -7.2334 0.1919 20 6 1.1581 -7.0928 0.9629 21 6 1.6506 -8.2483 1.7957 22 9 1.0618 -8.1936 3.0637 23 9 1.3056 -9.4525 1.1729 24 9 3.0416 -8.1713 1.9239 25 6 1.8421 -5.8929 0.9752 26 1 -0.3633 -0.5296 0.8807 27 1 -0.3633 1.0275 0.0182 28 1 -0.3633 -0.4979 -0.8991 29 1 1.8317 4.2180 -1.0383 30 1 3.0433 -3.6046 0.2995 31 1 -0.1113 -4.1489 -1.1682 32 1 -1.3218 -6.2914 -1.1816 33 1 -0.5164 -8.1713 0.1876 34 1 2.7296 -5.7826 1.5805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906469855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:21 Heat of formation + Delta-G solvation = -184.705157 kcal Electronic energy + Delta-G solvation = -25826.679366 eV Core-core repulsion = 21310.112867 eV Total energy + Delta-G solvation = -4516.566499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.18846 -48.70091 -48.65476 -42.14496 -40.55156 -39.14009 -37.34050 -35.91190 -34.26851 -32.94724 -31.12206 -28.52888 -27.99758 -27.12602 -25.30101 -23.66471 -22.84699 -21.24050 -19.83374 -19.51443 -19.37957 -19.29073 -18.71543 -18.04605 -17.43775 -17.38595 -16.90469 -16.72235 -16.08396 -15.67383 -15.54526 -15.48115 -15.12439 -15.08385 -14.95139 -14.80886 -14.68773 -14.64624 -14.36299 -14.10665 -14.08912 -13.92449 -13.67478 -12.98016 -12.65560 -12.52170 -12.41826 -12.09383 -11.83011 -11.64947 -11.24832 -10.38377 -10.20643 -9.97698 -9.41819 -8.65748 -6.32881 -0.21412 -0.03582 0.56431 1.21770 1.32018 1.38374 1.42292 1.66545 2.08443 2.13685 2.47181 2.64798 2.73791 2.88238 3.02845 3.38971 3.44957 3.77100 4.00334 4.01730 4.24242 4.24988 4.29005 4.52257 4.62245 4.77887 4.96879 5.04898 5.18799 5.24793 5.28839 5.67279 5.82503 5.92895 6.24220 6.58374 6.75731 6.99632 7.49362 8.48438 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.031791 B = 0.002993 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.529293 B = 9352.290170 C = 9864.198178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.424 5.424 3 C -0.344 4.344 4 H 0.064 0.936 5 C 0.020 3.980 6 N -0.889 5.889 7 Si 0.957 3.043 8 H -0.236 1.236 9 H -0.282 1.282 10 H -0.259 1.259 11 C 0.419 3.581 12 O -0.591 6.591 13 C 0.524 3.476 14 O -0.515 6.515 15 N -0.643 5.643 16 C 0.133 3.867 17 C -0.102 4.102 18 C -0.090 4.090 19 C -0.080 4.080 20 C -0.171 4.171 21 C 0.516 3.484 22 F -0.180 7.180 23 F -0.173 7.173 24 F -0.180 7.180 25 C -0.099 4.099 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.289 0.711 30 H 0.428 0.572 31 H 0.133 0.867 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 -22.927 0.252 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.144 5.144 3 C -0.472 4.472 4 H 0.082 0.918 5 C -0.186 4.186 6 N -0.524 5.524 7 Si 0.779 3.221 8 H -0.160 1.160 9 H -0.208 1.208 10 H -0.183 1.183 11 C 0.205 3.795 12 O -0.476 6.476 13 C 0.308 3.692 14 O -0.391 6.391 15 N -0.290 5.290 16 C 0.039 3.961 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.099 4.099 20 C -0.173 4.173 21 C 0.462 3.538 22 F -0.162 7.162 23 F -0.154 7.154 24 F -0.161 7.161 25 C -0.119 4.119 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.267 0.733 31 H 0.150 0.850 32 H 0.187 0.813 33 H 0.181 0.819 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.442 -22.657 0.195 24.180 hybrid contribution 0.707 0.480 -0.042 0.855 sum -7.736 -22.178 0.153 23.488 Atomic orbital electron populations 1.22522 0.79428 1.02498 1.04074 1.43413 1.06720 1.04388 1.59878 1.18900 1.09300 0.86919 1.32081 0.91784 1.26354 1.01053 0.93834 0.97357 1.69571 1.42577 1.00385 1.39917 0.85809 0.79004 0.78951 0.78306 1.16026 1.20799 1.18302 1.19922 0.87912 0.84886 0.86776 1.90635 1.14637 1.86858 1.55510 1.20028 0.87358 0.85134 0.76682 1.90705 1.13331 1.87284 1.47755 1.43084 1.12186 1.02942 1.70779 1.17757 0.95539 0.85082 0.97706 1.21558 0.94576 0.99238 0.96887 1.21340 1.00358 0.90540 0.98568 1.21266 0.93667 1.00883 0.94053 1.19765 1.00638 0.93511 1.03404 1.18169 0.75050 0.82438 0.78174 1.93232 1.83961 1.96512 1.42449 1.93194 1.91881 1.48078 1.82289 1.93196 1.30561 1.96335 1.96045 1.20712 1.01583 0.91469 0.98132 0.89382 0.90882 0.90560 0.90028 0.73277 0.84955 0.81283 0.81914 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.25 6.71 127.77 0.86 3.10 16 2 N -0.42 -20.71 2.66 -661.36 -1.76 -22.47 16 3 C -0.34 -19.53 9.45 84.36 0.80 -18.73 16 4 H 0.06 4.17 7.92 -2.91 -0.02 4.15 16 5 C 0.02 1.08 5.34 85.14 0.45 1.54 16 6 N -0.89 -50.22 13.94 21.77 0.30 -49.91 16 7 Si 0.96 39.99 24.34 68.60 1.67 41.66 16 8 H -0.24 -8.61 6.61 99.48 0.66 -7.95 16 9 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 10 H -0.26 -10.64 6.52 99.48 0.65 -9.99 16 11 C 0.42 19.47 7.66 87.05 0.67 20.14 16 12 O -0.59 -30.76 16.37 -3.76 -0.06 -30.82 16 13 C 0.52 19.23 7.51 87.05 0.65 19.89 16 14 O -0.52 -18.59 11.01 -3.63 -0.04 -18.63 16 15 N -0.64 -19.01 5.31 -305.34 -1.62 -20.64 16 16 C 0.13 3.31 6.25 38.22 0.24 3.55 16 17 C -0.10 -2.34 8.65 22.40 0.19 -2.15 16 18 C -0.09 -1.43 10.04 22.25 0.22 -1.21 16 19 C -0.08 -1.21 9.40 22.30 0.21 -1.00 16 20 C -0.17 -3.16 5.45 -19.88 -0.11 -3.27 16 21 C 0.52 9.35 3.36 71.24 0.24 9.59 16 22 F -0.18 -3.55 17.30 44.97 0.78 -2.77 16 23 F -0.17 -2.94 16.47 44.97 0.74 -2.20 16 24 F -0.18 -3.51 16.46 44.97 0.74 -2.77 16 25 C -0.10 -2.07 9.32 22.40 0.21 -1.86 16 26 H 0.09 3.21 7.00 -2.39 -0.02 3.19 16 27 H 0.07 2.88 4.35 -2.39 -0.01 2.87 16 28 H 0.08 2.82 6.43 -2.38 -0.02 2.81 16 29 H 0.29 14.79 8.30 -92.70 -0.77 14.02 16 30 H 0.43 11.82 8.31 -92.71 -0.77 11.05 16 31 H 0.13 3.37 6.51 -2.91 -0.02 3.35 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.16 1.58 7.60 -2.91 -0.02 1.55 16 34 H 0.15 2.77 7.60 -2.91 -0.02 2.75 16 Total: -1.00 -66.08 305.32 5.70 -60.37 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.32 Total: 18.61 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 4.64 Total: 29.58 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -3.08 Total: -93.02 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -0.10 Total: -49.45 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 2.26 Total: -7.74 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.67 Total: 41.66 kcal Total: -66.08 5.70 -60.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906469855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.331 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds