Wall clock time and date at job start Tue Mar 31 2020 11:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99933 * 2 1 4 4 C 1.52995 * 109.47200 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46859 * 65.00066 * 4 3 2 6 6 C 1.46493 * 119.99944 * 84.40766 * 5 4 3 7 7 C 1.50705 * 109.47160 * 89.99543 * 6 5 4 8 8 H 1.07992 * 119.99885 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00024 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00186 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00063 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47194 * 90.00302 * 11 9 7 13 13 H 1.48505 * 109.47392 * 210.00296 * 11 9 7 14 14 H 1.48502 * 109.47295 * 330.00182 * 11 9 7 15 15 C 1.34772 * 119.99991 * 264.40427 * 5 4 3 16 16 O 1.21536 * 120.00189 * 5.16560 * 15 5 4 17 17 C 1.48009 * 119.99957 * 185.16322 * 15 5 4 18 18 C 1.39849 * 120.93526 * 55.44418 * 17 15 5 19 19 C 1.38204 * 119.02253 * 179.77912 * 18 17 15 20 20 Cl 1.73601 * 119.52929 * 180.25015 * 19 18 17 21 21 N 1.31942 * 120.94357 * 0.51091 * 19 18 17 22 22 C 1.31750 * 122.07967 * 359.73870 * 21 19 18 23 23 C 1.38492 * 120.86206 * 0.02562 * 22 21 19 24 24 F 1.35103 * 120.51674 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.47007 * 299.99753 * 1 2 3 26 26 H 1.09007 * 109.47170 * 59.99581 * 1 2 3 27 27 H 1.08994 * 109.46947 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46716 * 60.00254 * 3 2 1 29 29 H 1.08996 * 109.47088 * 300.00032 * 3 2 1 30 30 H 1.09000 * 109.47248 * 305.00379 * 4 3 2 31 31 H 1.08995 * 109.47533 * 185.00382 * 4 3 2 32 32 H 1.08996 * 109.47672 * 210.00058 * 6 5 4 33 33 H 1.09001 * 109.47197 * 330.00327 * 6 5 4 34 34 H 0.96997 * 120.00377 * 179.97438 * 10 9 7 35 35 H 1.08005 * 120.48423 * 0.02562 * 18 17 15 36 36 H 1.07995 * 119.56866 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1682 1.3872 -2.4496 7 6 5.5891 1.8877 -2.4918 8 1 6.2796 1.6195 -1.7060 9 6 6.0076 2.6872 -3.5342 10 7 5.1668 3.0135 -4.4914 11 14 7.7690 3.3070 -3.5869 12 1 8.6149 2.3327 -4.3220 13 1 7.8112 4.6202 -4.2790 14 1 8.2813 3.4610 -2.2016 15 6 4.2034 -0.7628 -1.3037 16 8 3.9544 -1.4595 -0.3395 17 6 4.7568 -1.3721 -2.5338 18 6 5.9557 -0.9118 -3.0875 19 6 6.4388 -1.5126 -4.2346 20 17 7.9292 -0.9560 -4.9293 21 7 5.7808 -2.4997 -4.8121 22 6 4.6457 -2.9615 -4.3281 23 6 4.0911 -2.4216 -3.1797 24 9 2.9265 -2.9002 -2.6898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5683 0.8409 31 1 3.9785 2.1765 0.0890 32 1 3.9672 0.7887 -3.3381 33 1 3.4848 2.2359 -2.4209 34 1 5.4612 3.5762 -5.2245 35 1 6.4982 -0.1015 -2.6231 36 1 4.1408 -3.7710 -4.8341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931895402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:30 Heat of formation + Delta-G solvation = -105.068881 kcal Electronic energy + Delta-G solvation = -25084.456540 eV Core-core repulsion = 21123.140010 eV Total energy + Delta-G solvation = -3961.316530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.17384 -41.66975 -40.34432 -38.66481 -37.69833 -36.84414 -34.65379 -33.99729 -31.80563 -31.16120 -29.05946 -27.32648 -26.11383 -25.12407 -24.66920 -23.54863 -20.86495 -19.02779 -18.87404 -18.59064 -18.26996 -17.69126 -17.42435 -17.01011 -16.76604 -16.52273 -16.12479 -15.89911 -15.52425 -15.29705 -15.10575 -15.01631 -14.46378 -14.28938 -13.66859 -13.45317 -13.44241 -13.06355 -13.02079 -12.75578 -12.63318 -12.58497 -12.32036 -12.12780 -11.98906 -11.72516 -11.43128 -11.06637 -10.73053 -10.57679 -10.54991 -9.94807 -9.56641 -8.20341 -6.33112 -0.56955 -0.29082 0.64447 1.44282 1.48700 1.53394 1.56490 2.02316 2.33180 2.43417 2.77932 2.93344 3.11665 3.20974 3.40308 3.54029 3.87488 4.13048 4.19254 4.29075 4.39278 4.44198 4.52024 4.53999 4.61888 4.76761 4.80780 4.83641 4.93265 5.15793 5.22636 5.61507 5.74244 6.00694 6.30616 6.33736 6.41528 6.74971 7.11105 7.37505 8.85375 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011317 B = 0.006912 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.491441 B = 4049.897132 C = 5912.539604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.048 3.952 4 C 0.115 3.885 5 N -0.582 5.582 6 C 0.254 3.746 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.042 3.958 10 N -0.910 5.910 11 Si 0.927 3.073 12 H -0.263 1.263 13 H -0.287 1.287 14 H -0.264 1.264 15 C 0.562 3.438 16 O -0.557 6.557 17 C -0.113 4.113 18 C -0.069 4.069 19 C 0.150 3.850 20 Cl -0.017 7.017 21 N -0.449 5.449 22 C 0.099 3.901 23 C 0.080 3.920 24 F -0.118 7.118 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.012 0.988 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.172 0.828 36 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 -5.152 2.742 6.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.029 4.029 4 C -0.007 4.007 5 N -0.312 5.312 6 C 0.133 3.867 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.161 4.161 10 N -0.548 5.548 11 Si 0.753 3.247 12 H -0.188 1.188 13 H -0.213 1.213 14 H -0.189 1.189 15 C 0.348 3.652 16 O -0.437 6.437 17 C -0.125 4.125 18 C -0.090 4.090 19 C -0.013 4.013 20 Cl 0.012 6.988 21 N -0.160 5.160 22 C -0.061 4.061 23 C 0.057 3.943 24 F -0.097 7.097 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.189 0.811 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.616 -5.845 2.295 6.803 hybrid contribution 0.154 1.300 0.363 1.358 sum -2.462 -4.545 2.659 5.813 Atomic orbital electron populations 1.22852 0.80224 1.03139 1.00611 1.88048 1.20877 1.28304 1.95486 1.23012 0.93660 0.84917 1.01326 1.21652 0.93080 0.99868 0.86130 1.48034 1.63615 1.06211 1.13296 1.19120 0.96710 0.89665 0.81187 1.21524 0.96288 1.31619 1.08524 0.91590 1.25418 1.00350 0.95495 0.94807 1.69992 1.36511 1.36565 1.11719 0.85989 0.81523 0.78275 0.78962 1.18774 1.21282 1.18869 1.17917 0.78045 0.82895 0.86342 1.90726 1.53486 1.61903 1.37614 1.20510 0.97015 0.97273 0.97678 1.22454 0.94831 0.97579 0.94159 1.21523 0.92007 0.94889 0.92893 1.98396 1.28863 1.87142 1.84439 1.66951 1.07368 1.10600 1.31078 1.23230 0.91022 1.00190 0.91628 1.19001 0.84349 0.95080 0.95826 1.91548 1.44464 1.86448 1.87228 0.92317 0.94125 0.89539 0.89620 0.93609 0.90112 0.87114 0.96982 0.95288 0.92355 0.81088 0.76164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.11 9.96 -148.83 -1.48 -15.59 16 3 C 0.05 1.46 6.28 71.98 0.45 1.91 16 4 C 0.11 3.93 5.83 86.38 0.50 4.43 16 5 N -0.58 -23.78 2.41 -829.40 -2.00 -25.78 16 6 C 0.25 11.42 4.75 85.64 0.41 11.83 16 7 C -0.54 -25.16 6.47 25.60 0.17 -25.00 16 8 H 0.07 3.04 7.26 -2.91 -0.02 3.01 16 9 C 0.04 2.01 5.46 84.65 0.46 2.47 16 10 N -0.91 -47.08 13.29 21.45 0.28 -46.80 16 11 Si 0.93 38.43 29.54 68.60 2.03 40.45 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 13 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 15 C 0.56 24.08 6.71 86.84 0.58 24.66 16 16 O -0.56 -25.93 16.08 -3.68 -0.06 -25.99 16 17 C -0.11 -4.49 4.47 -19.85 -0.09 -4.58 16 18 C -0.07 -2.70 7.77 22.65 0.18 -2.53 16 19 C 0.15 5.43 7.26 84.67 0.62 6.04 16 20 Cl -0.02 -0.58 29.10 -2.72 -0.08 -0.66 16 21 N -0.45 -14.90 10.31 -186.68 -1.92 -16.82 16 22 C 0.10 2.88 11.17 84.77 0.95 3.83 16 23 C 0.08 2.80 7.33 22.77 0.17 2.97 16 24 F -0.12 -4.22 16.85 44.97 0.76 -3.46 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.43 8.11 -2.39 -0.02 1.41 16 30 H 0.08 2.83 7.33 -2.39 -0.02 2.81 16 31 H 0.11 3.41 8.11 -2.39 -0.02 3.39 16 32 H 0.01 0.60 6.75 -2.39 -0.02 0.59 16 33 H 0.03 1.37 8.04 -2.39 -0.02 1.35 16 34 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 35 H 0.17 7.04 5.23 -2.91 -0.02 7.02 16 36 H 0.22 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -59.59 333.14 4.28 -55.31 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.12 Total: 11.35 kcal Atomic # 6 Polarization: 22.35 SS G_CDS: 5.64 Total: 27.99 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -3.64 Total: -89.40 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.54 Total: -41.58 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.76 Total: -3.46 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -59.59 4.28 -55.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931895402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.761 kcal (2) G-P(sol) polarization free energy of solvation -59.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds