Wall clock time and date at job start Tue Mar 31 2020 11:07:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42908 * 113.99933 * 2 1
4 4 C 1.52995 * 109.47200 * 180.02562 * 3 2 1
5 5 N 1.46507 * 109.46859 * 65.00066 * 4 3 2
6 6 C 1.46493 * 119.99944 * 84.40766 * 5 4 3
7 7 C 1.50705 * 109.47160 * 89.99543 * 6 5 4
8 8 H 1.07992 * 119.99885 * 0.02562 * 7 6 5
9 9 C 1.37874 * 120.00024 * 179.97438 * 7 6 5
10 10 N 1.31517 * 120.00186 * 0.02562 * 9 7 6
11 11 Si 1.86796 * 120.00063 * 180.02562 * 9 7 6
12 12 H 1.48501 * 109.47194 * 90.00302 * 11 9 7
13 13 H 1.48505 * 109.47392 * 210.00296 * 11 9 7
14 14 H 1.48502 * 109.47295 * 330.00182 * 11 9 7
15 15 C 1.34772 * 119.99991 * 264.40427 * 5 4 3
16 16 O 1.21536 * 120.00189 * 5.16560 * 15 5 4
17 17 C 1.48009 * 119.99957 * 185.16322 * 15 5 4
18 18 C 1.39849 * 120.93526 * 55.44418 * 17 15 5
19 19 C 1.38204 * 119.02253 * 179.77912 * 18 17 15
20 20 Cl 1.73601 * 119.52929 * 180.25015 * 19 18 17
21 21 N 1.31942 * 120.94357 * 0.51091 * 19 18 17
22 22 C 1.31750 * 122.07967 * 359.73870 * 21 19 18
23 23 C 1.38492 * 120.86206 * 0.02562 * 22 21 19
24 24 F 1.35103 * 120.51674 * 179.97438 * 23 22 21
25 25 H 1.09000 * 109.47007 * 299.99753 * 1 2 3
26 26 H 1.09007 * 109.47170 * 59.99581 * 1 2 3
27 27 H 1.08994 * 109.46947 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.46716 * 60.00254 * 3 2 1
29 29 H 1.08996 * 109.47088 * 300.00032 * 3 2 1
30 30 H 1.09000 * 109.47248 * 305.00379 * 4 3 2
31 31 H 1.08995 * 109.47533 * 185.00382 * 4 3 2
32 32 H 1.08996 * 109.47672 * 210.00058 * 6 5 4
33 33 H 1.09001 * 109.47197 * 330.00327 * 6 5 4
34 34 H 0.96997 * 120.00377 * 179.97438 * 10 9 7
35 35 H 1.08005 * 120.48423 * 0.02562 * 18 17 15
36 36 H 1.07995 * 119.56866 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1848 -0.0006
5 7 3.9756 0.5645 -1.2528
6 6 4.1682 1.3872 -2.4496
7 6 5.5891 1.8877 -2.4918
8 1 6.2796 1.6195 -1.7060
9 6 6.0076 2.6872 -3.5342
10 7 5.1668 3.0135 -4.4914
11 14 7.7690 3.3070 -3.5869
12 1 8.6149 2.3327 -4.3220
13 1 7.8112 4.6202 -4.2790
14 1 8.2813 3.4610 -2.2016
15 6 4.2034 -0.7628 -1.3037
16 8 3.9544 -1.4595 -0.3395
17 6 4.7568 -1.3721 -2.5338
18 6 5.9557 -0.9118 -3.0875
19 6 6.4388 -1.5126 -4.2346
20 17 7.9292 -0.9560 -4.9293
21 7 5.7808 -2.4997 -4.8121
22 6 4.6457 -2.9615 -4.3281
23 6 4.0911 -2.4216 -3.1797
24 9 2.9265 -2.9002 -2.6898
25 1 -0.3633 0.5138 0.8900
26 1 -0.3634 0.5139 -0.8900
27 1 -0.3633 -1.0276 -0.0005
28 1 1.6886 1.8464 0.8900
29 1 1.6886 1.8464 -0.8900
30 1 3.8515 0.5683 0.8409
31 1 3.9785 2.1765 0.0890
32 1 3.9672 0.7887 -3.3381
33 1 3.4848 2.2359 -2.4209
34 1 5.4612 3.5762 -5.2245
35 1 6.4982 -0.1015 -2.6231
36 1 4.1408 -3.7710 -4.8341
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000931895402.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:07:30
Heat of formation + Delta-G solvation = -105.068881 kcal
Electronic energy + Delta-G solvation = -25084.456540 eV
Core-core repulsion = 21123.140010 eV
Total energy + Delta-G solvation = -3961.316530 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.078 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-50.17384 -41.66975 -40.34432 -38.66481 -37.69833 -36.84414 -34.65379 -33.99729
-31.80563 -31.16120 -29.05946 -27.32648 -26.11383 -25.12407 -24.66920 -23.54863
-20.86495 -19.02779 -18.87404 -18.59064 -18.26996 -17.69126 -17.42435 -17.01011
-16.76604 -16.52273 -16.12479 -15.89911 -15.52425 -15.29705 -15.10575 -15.01631
-14.46378 -14.28938 -13.66859 -13.45317 -13.44241 -13.06355 -13.02079 -12.75578
-12.63318 -12.58497 -12.32036 -12.12780 -11.98906 -11.72516 -11.43128 -11.06637
-10.73053 -10.57679 -10.54991 -9.94807 -9.56641 -8.20341 -6.33112 -0.56955
-0.29082 0.64447 1.44282 1.48700 1.53394 1.56490 2.02316 2.33180
2.43417 2.77932 2.93344 3.11665 3.20974 3.40308 3.54029 3.87488
4.13048 4.19254 4.29075 4.39278 4.44198 4.52024 4.53999 4.61888
4.76761 4.80780 4.83641 4.93265 5.15793 5.22636 5.61507 5.74244
6.00694 6.30616 6.33736 6.41528 6.74971 7.11105 7.37505 8.85375
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.011317 B = 0.006912 C = 0.004735
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2473.491441 B = 4049.897132 C = 5912.539604
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.408 6.408
3 C 0.048 3.952
4 C 0.115 3.885
5 N -0.582 5.582
6 C 0.254 3.746
7 C -0.542 4.542
8 H 0.066 0.934
9 C 0.042 3.958
10 N -0.910 5.910
11 Si 0.927 3.073
12 H -0.263 1.263
13 H -0.287 1.287
14 H -0.264 1.264
15 C 0.562 3.438
16 O -0.557 6.557
17 C -0.113 4.113
18 C -0.069 4.069
19 C 0.150 3.850
20 Cl -0.017 7.017
21 N -0.449 5.449
22 C 0.099 3.901
23 C 0.080 3.920
24 F -0.118 7.118
25 H 0.058 0.942
26 H 0.040 0.960
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.046 0.954
30 H 0.080 0.920
31 H 0.111 0.889
32 H 0.012 0.988
33 H 0.029 0.971
34 H 0.267 0.733
35 H 0.172 0.828
36 H 0.222 0.778
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.013 -5.152 2.742 6.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.327 6.327
3 C -0.029 4.029
4 C -0.007 4.007
5 N -0.312 5.312
6 C 0.133 3.867
7 C -0.580 4.580
8 H 0.084 0.916
9 C -0.161 4.161
10 N -0.548 5.548
11 Si 0.753 3.247
12 H -0.188 1.188
13 H -0.213 1.213
14 H -0.189 1.189
15 C 0.348 3.652
16 O -0.437 6.437
17 C -0.125 4.125
18 C -0.090 4.090
19 C -0.013 4.013
20 Cl 0.012 6.988
21 N -0.160 5.160
22 C -0.061 4.061
23 C 0.057 3.943
24 F -0.097 7.097
25 H 0.077 0.923
26 H 0.059 0.941
27 H 0.105 0.895
28 H 0.104 0.896
29 H 0.064 0.936
30 H 0.099 0.901
31 H 0.129 0.871
32 H 0.030 0.970
33 H 0.047 0.953
34 H 0.076 0.924
35 H 0.189 0.811
36 H 0.238 0.762
Dipole moment (debyes) X Y Z Total
from point charges -2.616 -5.845 2.295 6.803
hybrid contribution 0.154 1.300 0.363 1.358
sum -2.462 -4.545 2.659 5.813
Atomic orbital electron populations
1.22852 0.80224 1.03139 1.00611 1.88048 1.20877 1.28304 1.95486
1.23012 0.93660 0.84917 1.01326 1.21652 0.93080 0.99868 0.86130
1.48034 1.63615 1.06211 1.13296 1.19120 0.96710 0.89665 0.81187
1.21524 0.96288 1.31619 1.08524 0.91590 1.25418 1.00350 0.95495
0.94807 1.69992 1.36511 1.36565 1.11719 0.85989 0.81523 0.78275
0.78962 1.18774 1.21282 1.18869 1.17917 0.78045 0.82895 0.86342
1.90726 1.53486 1.61903 1.37614 1.20510 0.97015 0.97273 0.97678
1.22454 0.94831 0.97579 0.94159 1.21523 0.92007 0.94889 0.92893
1.98396 1.28863 1.87142 1.84439 1.66951 1.07368 1.10600 1.31078
1.23230 0.91022 1.00190 0.91628 1.19001 0.84349 0.95080 0.95826
1.91548 1.44464 1.86448 1.87228 0.92317 0.94125 0.89539 0.89620
0.93609 0.90112 0.87114 0.96982 0.95288 0.92355 0.81088 0.76164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.70 11.01 113.37 1.25 1.95 16
2 O -0.41 -14.11 9.96 -148.83 -1.48 -15.59 16
3 C 0.05 1.46 6.28 71.98 0.45 1.91 16
4 C 0.11 3.93 5.83 86.38 0.50 4.43 16
5 N -0.58 -23.78 2.41 -829.40 -2.00 -25.78 16
6 C 0.25 11.42 4.75 85.64 0.41 11.83 16
7 C -0.54 -25.16 6.47 25.60 0.17 -25.00 16
8 H 0.07 3.04 7.26 -2.91 -0.02 3.01 16
9 C 0.04 2.01 5.46 84.65 0.46 2.47 16
10 N -0.91 -47.08 13.29 21.45 0.28 -46.80 16
11 Si 0.93 38.43 29.54 68.60 2.03 40.45 16
12 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16
13 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16
14 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16
15 C 0.56 24.08 6.71 86.84 0.58 24.66 16
16 O -0.56 -25.93 16.08 -3.68 -0.06 -25.99 16
17 C -0.11 -4.49 4.47 -19.85 -0.09 -4.58 16
18 C -0.07 -2.70 7.77 22.65 0.18 -2.53 16
19 C 0.15 5.43 7.26 84.67 0.62 6.04 16
20 Cl -0.02 -0.58 29.10 -2.72 -0.08 -0.66 16
21 N -0.45 -14.90 10.31 -186.68 -1.92 -16.82 16
22 C 0.10 2.88 11.17 84.77 0.95 3.83 16
23 C 0.08 2.80 7.33 22.77 0.17 2.97 16
24 F -0.12 -4.22 16.85 44.97 0.76 -3.46 16
25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
26 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16
27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16
28 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16
29 H 0.05 1.43 8.11 -2.39 -0.02 1.41 16
30 H 0.08 2.83 7.33 -2.39 -0.02 2.81 16
31 H 0.11 3.41 8.11 -2.39 -0.02 3.39 16
32 H 0.01 0.60 6.75 -2.39 -0.02 0.59 16
33 H 0.03 1.37 8.04 -2.39 -0.02 1.35 16
34 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16
35 H 0.17 7.04 5.23 -2.91 -0.02 7.02 16
36 H 0.22 4.27 8.06 -2.91 -0.02 4.24 16
Total: -1.00 -59.59 333.14 4.28 -55.31
By element:
Atomic # 1 Polarization: 10.23 SS G_CDS: 1.12 Total: 11.35 kcal
Atomic # 6 Polarization: 22.35 SS G_CDS: 5.64 Total: 27.99 kcal
Atomic # 7 Polarization: -85.76 SS G_CDS: -3.64 Total: -89.40 kcal
Atomic # 8 Polarization: -40.04 SS G_CDS: -1.54 Total: -41.58 kcal
Atomic # 9 Polarization: -4.22 SS G_CDS: 0.76 Total: -3.46 kcal
Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.45 kcal
Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal
Total: -59.59 4.28 -55.31 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931895402.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.761 kcal
(2) G-P(sol) polarization free energy of solvation -59.589 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.350 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.308 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.069 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds