Wall clock time and date at job start Tue Mar 31 2020 11:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47253 * 89.99755 * 3 2 1 5 5 H 1.48506 * 109.47105 * 209.99950 * 3 2 1 6 6 H 1.48496 * 109.47369 * 329.99856 * 3 2 1 7 7 C 1.38806 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99625 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00327 * 180.02562 * 7 2 1 10 10 C 1.46507 * 120.00300 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.63411 * 328.13766 * 10 9 7 12 12 C 1.55157 * 110.72160 * 205.00141 * 10 9 7 13 13 C 1.54906 * 101.57923 * 206.13262 * 12 10 9 14 14 N 1.47420 * 104.83396 * 37.00453 * 13 12 10 15 15 C 1.34775 * 125.64745 * 155.90658 * 14 13 12 16 16 O 1.21639 * 120.00189 * 175.31122 * 15 14 13 17 17 C 1.47196 * 120.00134 * 355.30932 * 15 14 13 18 18 C 1.44426 * 123.45822 * 35.06322 * 17 15 14 19 19 C 1.32768 * 113.07741 * 179.81225 * 18 17 15 20 20 S 1.75507 * 110.58115 * 0.44031 * 19 18 17 21 21 C 1.36013 * 123.45893 * 215.36159 * 17 15 14 22 22 C 1.50696 * 124.59422 * 0.02562 * 21 17 15 23 23 F 1.39896 * 109.47383 * 300.00247 * 22 21 17 24 24 F 1.39904 * 109.46886 * 60.00233 * 22 21 17 25 25 C 1.47016 * 108.70536 * 335.87479 * 14 13 12 26 26 H 0.97005 * 119.99950 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00273 * 359.97438 * 9 7 2 28 28 H 1.09003 * 111.00163 * 324.20644 * 12 10 9 29 29 H 1.08997 * 111.00492 * 88.05627 * 12 10 9 30 30 H 1.08999 * 110.36765 * 155.84797 * 13 12 10 31 31 H 1.08999 * 110.36489 * 278.16360 * 13 12 10 32 32 H 1.07999 * 123.45920 * 359.97438 * 18 17 15 33 33 H 1.08000 * 124.70878 * 180.18113 * 19 18 17 34 34 H 1.09000 * 109.46904 * 180.02562 * 22 21 17 35 35 H 1.09002 * 109.88417 * 241.64004 * 25 14 13 36 36 H 1.09003 * 109.88577 * 120.47267 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 -0.0011 11 1 3.5538 -3.2373 0.5363 12 6 5.5254 -2.2892 0.6129 13 6 6.3125 -3.4327 -0.0746 14 7 5.7749 -3.4893 -1.4461 15 6 6.4202 -3.9793 -2.5231 16 8 5.8472 -4.0543 -3.5935 17 6 7.8185 -4.4235 -2.4042 18 6 8.3543 -5.0593 -1.2233 19 6 9.6376 -5.3785 -1.3410 20 16 10.2514 -4.8976 -2.9134 21 6 8.7401 -4.2721 -3.3930 22 6 8.4629 -3.6363 -4.7309 23 9 7.4622 -4.3570 -5.3914 24 9 8.0391 -2.3165 -4.5411 25 6 4.4179 -2.9235 -1.4444 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0004 28 1 5.9425 -1.3164 0.3527 29 1 5.5022 -2.4260 1.6941 30 1 7.3776 -3.2020 -0.0938 31 1 6.1374 -4.3770 0.4408 32 1 7.7703 -5.2573 -0.3367 33 1 10.2237 -5.8628 -0.5739 34 1 9.3722 -3.6434 -5.3319 35 1 3.6995 -3.6822 -1.7550 36 1 4.3720 -2.0683 -2.1187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970597123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:11 Heat of formation + Delta-G solvation = -72.009799 kcal Electronic energy + Delta-G solvation = -24300.536672 eV Core-core repulsion = 20355.070187 eV Total energy + Delta-G solvation = -3945.466485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.95644 -46.95223 -40.14438 -37.82858 -36.87502 -34.27535 -31.68253 -31.40475 -29.95991 -28.45308 -26.72269 -24.31646 -23.35011 -22.62707 -21.02971 -20.18051 -19.08594 -18.65136 -17.77249 -17.25330 -17.12732 -16.32383 -16.18103 -15.90684 -15.20462 -14.65117 -14.45262 -14.05482 -13.83554 -13.73303 -13.30119 -13.23655 -13.12336 -13.05450 -12.65139 -12.51629 -12.47735 -12.20892 -11.82723 -11.54919 -11.43120 -11.28713 -10.89993 -10.79748 -10.52315 -10.11172 -9.84813 -9.64557 -9.53968 -9.03602 -8.84342 -8.39952 -7.40097 -5.83003 -3.21210 0.24697 0.94816 1.36519 1.71863 2.99935 3.20937 3.34881 3.37732 3.43351 3.48462 3.87405 4.33054 4.46563 4.53989 4.72947 4.76813 4.84858 4.95977 5.05516 5.17603 5.32140 5.40414 5.51826 5.57624 5.63102 5.76925 5.80367 5.83149 6.15836 6.22019 6.41266 6.58594 6.73800 7.65211 7.90788 8.25865 8.35493 9.11726 9.83855 10.01461 11.34662 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.003561 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.086417 B = 7860.652852 C = 8390.920991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.093 0.907 9 N -0.736 5.736 10 C 0.178 3.822 11 H 0.078 0.922 12 C -0.146 4.146 13 C 0.098 3.902 14 N -0.604 5.604 15 C 0.575 3.425 16 O -0.516 6.516 17 C -0.092 4.092 18 C -0.115 4.115 19 C -0.213 4.213 20 S 0.216 5.784 21 C -0.269 4.269 22 C 0.350 3.650 23 F -0.173 7.173 24 F -0.189 7.189 25 C 0.084 3.916 26 H 0.261 0.739 27 H 0.364 0.636 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.118 -11.547 -2.217 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.066 3.934 11 H 0.096 0.904 12 C -0.185 4.185 13 C -0.025 4.025 14 N -0.338 5.338 15 C 0.361 3.639 16 O -0.392 6.392 17 C -0.112 4.112 18 C -0.144 4.144 19 C -0.349 4.349 20 S 0.483 5.517 21 C -0.389 4.389 22 C 0.294 3.706 23 F -0.154 7.154 24 F -0.171 7.171 25 C -0.041 4.041 26 H 0.071 0.929 27 H 0.198 0.802 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.178 0.822 33 H 0.194 0.806 34 H 0.133 0.867 35 H 0.084 0.916 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.928 -11.745 -3.554 29.592 hybrid contribution -0.982 1.348 0.711 1.813 sum 25.946 -10.397 -2.843 28.096 Atomic orbital electron populations 1.69698 1.05142 1.26029 1.56673 1.24675 0.95227 0.97278 1.01435 0.86572 0.79330 0.84959 0.77801 1.20920 1.20265 1.21574 1.19091 0.80276 0.94950 1.44068 0.88922 1.42727 1.04208 1.01544 1.89238 1.21186 0.90629 0.90190 0.91392 0.90365 1.23148 0.96826 0.98053 1.00442 1.22506 0.98452 0.99211 0.82337 1.48370 1.17588 1.60230 1.07638 1.17244 0.84677 0.78493 0.83531 1.90903 1.67320 1.54459 1.26551 1.20365 0.95097 1.02113 0.93577 1.21480 0.94836 0.99887 0.98246 1.25604 0.99433 1.08476 1.01368 1.82834 1.06603 1.53754 1.08528 1.25083 1.01232 1.11179 1.01414 1.19463 0.88990 0.74388 0.87733 1.93125 1.63983 1.77469 1.80852 1.93062 1.91852 1.36242 1.95908 1.23203 0.80575 0.98378 1.01934 0.92885 0.80235 0.90727 0.89611 0.90745 0.91143 0.82244 0.80594 0.86694 0.91611 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.51 6.52 56.52 0.37 -6.15 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.25 -7.02 10.44 -15.06 -0.16 -7.17 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 N -0.74 -16.85 4.95 -51.65 -0.26 -17.10 16 10 C 0.18 3.23 3.61 -66.09 -0.24 3.00 16 11 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 12 C -0.15 -1.99 6.71 -24.58 -0.17 -2.16 16 13 C 0.10 1.16 5.25 -2.53 -0.01 1.15 16 14 N -0.60 -9.65 3.33 -171.88 -0.57 -10.23 16 15 C 0.58 9.82 7.24 -12.62 -0.09 9.73 16 16 O -0.52 -10.80 14.53 5.24 0.08 -10.72 16 17 C -0.09 -1.20 5.55 -104.62 -0.58 -1.79 16 18 C -0.12 -1.06 8.38 -39.02 -0.33 -1.38 16 19 C -0.21 -1.44 11.12 28.86 0.32 -1.12 16 20 S 0.22 1.53 22.95 -107.50 -2.47 -0.93 16 21 C -0.27 -3.11 5.78 -35.11 -0.20 -3.31 16 22 C 0.35 4.32 5.08 36.00 0.18 4.50 16 23 F -0.17 -2.73 15.11 2.25 0.03 -2.70 16 24 F -0.19 -2.90 16.95 2.25 0.04 -2.86 16 25 C 0.08 1.58 6.62 -3.07 -0.02 1.56 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.36 8.23 5.62 -40.82 -0.23 8.00 16 28 H 0.07 1.06 8.01 -51.93 -0.42 0.65 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.75 6.54 -51.93 -0.34 0.41 16 31 H 0.07 0.67 7.47 -51.93 -0.39 0.29 16 32 H 0.16 1.19 6.05 -52.49 -0.32 0.88 16 33 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.12 0.86 8.11 -51.93 -0.42 0.44 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -35.40 320.19 -7.46 -42.86 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.81 Total: 4.63 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.39 Total: 3.21 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.05 Total: -55.47 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.07 Total: -5.56 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.47 Total: -0.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.40 -7.46 -42.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970597123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.150 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds