Wall clock time and date at job start Tue Mar 31 2020 11:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47253 * 89.99755 * 3 2 1 5 5 H 1.48506 * 109.47105 * 209.99950 * 3 2 1 6 6 H 1.48496 * 109.47369 * 329.99856 * 3 2 1 7 7 C 1.38806 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99625 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00327 * 180.02562 * 7 2 1 10 10 C 1.46507 * 120.00300 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.63411 * 328.13766 * 10 9 7 12 12 C 1.55157 * 110.72160 * 205.00141 * 10 9 7 13 13 C 1.54906 * 101.57923 * 206.13262 * 12 10 9 14 14 N 1.47420 * 104.83396 * 37.00453 * 13 12 10 15 15 C 1.34775 * 125.64745 * 155.90658 * 14 13 12 16 16 O 1.21639 * 120.00189 * 175.31122 * 15 14 13 17 17 C 1.47196 * 120.00134 * 355.30932 * 15 14 13 18 18 C 1.44426 * 123.45822 * 35.06322 * 17 15 14 19 19 C 1.32768 * 113.07741 * 179.81225 * 18 17 15 20 20 S 1.75507 * 110.58115 * 0.44031 * 19 18 17 21 21 C 1.36013 * 123.45893 * 215.36159 * 17 15 14 22 22 C 1.50696 * 124.59422 * 0.02562 * 21 17 15 23 23 F 1.39896 * 109.47383 * 300.00247 * 22 21 17 24 24 F 1.39904 * 109.46886 * 60.00233 * 22 21 17 25 25 C 1.47016 * 108.70536 * 335.87479 * 14 13 12 26 26 H 0.97005 * 119.99950 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00273 * 359.97438 * 9 7 2 28 28 H 1.09003 * 111.00163 * 324.20644 * 12 10 9 29 29 H 1.08997 * 111.00492 * 88.05627 * 12 10 9 30 30 H 1.08999 * 110.36765 * 155.84797 * 13 12 10 31 31 H 1.08999 * 110.36489 * 278.16360 * 13 12 10 32 32 H 1.07999 * 123.45920 * 359.97438 * 18 17 15 33 33 H 1.08000 * 124.70878 * 180.18113 * 19 18 17 34 34 H 1.09000 * 109.46904 * 180.02562 * 22 21 17 35 35 H 1.09002 * 109.88417 * 241.64004 * 25 14 13 36 36 H 1.09003 * 109.88577 * 120.47267 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 -0.0011 11 1 3.5538 -3.2373 0.5363 12 6 5.5254 -2.2892 0.6129 13 6 6.3125 -3.4327 -0.0746 14 7 5.7749 -3.4893 -1.4461 15 6 6.4202 -3.9793 -2.5231 16 8 5.8472 -4.0543 -3.5935 17 6 7.8185 -4.4235 -2.4042 18 6 8.3543 -5.0593 -1.2233 19 6 9.6376 -5.3785 -1.3410 20 16 10.2514 -4.8976 -2.9134 21 6 8.7401 -4.2721 -3.3930 22 6 8.4629 -3.6363 -4.7309 23 9 7.4622 -4.3570 -5.3914 24 9 8.0391 -2.3165 -4.5411 25 6 4.4179 -2.9235 -1.4444 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0004 28 1 5.9425 -1.3164 0.3527 29 1 5.5022 -2.4260 1.6941 30 1 7.3776 -3.2020 -0.0938 31 1 6.1374 -4.3770 0.4408 32 1 7.7703 -5.2573 -0.3367 33 1 10.2237 -5.8628 -0.5739 34 1 9.3722 -3.6434 -5.3319 35 1 3.6995 -3.6822 -1.7550 36 1 4.3720 -2.0683 -2.1187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970597123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:11 Heat of formation + Delta-G solvation = -97.399267 kcal Electronic energy + Delta-G solvation = -24301.637642 eV Core-core repulsion = 20355.070187 eV Total energy + Delta-G solvation = -3946.567455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.99095 -48.02603 -41.33266 -39.02705 -37.91669 -36.06890 -33.60251 -32.14592 -31.44936 -29.81256 -27.80255 -25.78793 -24.40183 -24.04723 -21.99603 -21.60187 -20.23026 -19.71881 -19.42363 -18.32820 -18.22005 -17.65568 -17.13651 -17.02567 -16.46778 -16.04751 -15.72078 -15.46349 -15.04310 -14.93245 -14.74392 -14.39894 -14.37735 -14.08218 -13.90581 -13.81297 -13.62739 -13.41659 -13.20205 -13.01722 -12.62279 -12.40659 -12.34444 -12.20475 -11.99332 -11.87869 -11.60299 -11.16051 -11.02654 -10.21806 -9.75295 -9.44293 -9.41475 -8.06319 -5.42257 -0.52589 0.30411 0.75440 0.97438 1.35894 1.39877 1.46130 1.82479 2.06088 2.45177 2.69616 3.07537 3.22499 3.42759 3.51650 3.59269 3.71539 3.87923 3.92627 4.15008 4.23091 4.27697 4.35945 4.43871 4.60286 4.74605 4.82717 4.92132 4.97458 5.12318 5.13741 5.19854 5.30927 5.72883 6.17535 6.43731 6.99678 7.02847 7.75932 7.94441 9.14800 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.003561 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.086417 B = 7860.652852 C = 8390.920991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.059 4.059 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.259 1.259 6 H -0.298 1.298 7 C -0.239 4.239 8 H 0.060 0.940 9 N -0.740 5.740 10 C 0.170 3.830 11 H 0.078 0.922 12 C -0.132 4.132 13 C 0.100 3.900 14 N -0.606 5.606 15 C 0.566 3.434 16 O -0.573 6.573 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.196 4.196 20 S 0.300 5.700 21 C -0.297 4.297 22 C 0.331 3.669 23 F -0.201 7.201 24 F -0.214 7.214 25 C 0.093 3.907 26 H 0.259 0.741 27 H 0.368 0.632 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.176 0.824 33 H 0.218 0.782 34 H 0.166 0.834 35 H 0.042 0.958 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.199 -12.337 -0.338 33.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.251 4.251 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.184 1.184 6 H -0.225 1.225 7 C -0.370 4.370 8 H 0.078 0.922 9 N -0.381 5.381 10 C 0.060 3.940 11 H 0.096 0.904 12 C -0.171 4.171 13 C -0.021 4.021 14 N -0.338 5.338 15 C 0.354 3.646 16 O -0.454 6.454 17 C -0.144 4.144 18 C -0.157 4.157 19 C -0.331 4.331 20 S 0.568 5.432 21 C -0.418 4.418 22 C 0.276 3.724 23 F -0.182 7.182 24 F -0.195 7.195 25 C -0.033 4.033 26 H 0.068 0.932 27 H 0.202 0.798 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.193 0.807 33 H 0.235 0.765 34 H 0.183 0.817 35 H 0.060 0.940 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 32.101 -12.575 -1.636 34.514 hybrid contribution -2.454 1.430 0.060 2.841 sum 29.647 -11.145 -1.575 31.711 Atomic orbital electron populations 1.69882 1.07176 1.26812 1.59195 1.25504 0.96081 1.01299 1.02225 0.85426 0.78329 0.79627 0.78458 1.19353 1.18351 1.22528 1.19064 0.82441 0.93642 1.41855 0.92222 1.42697 1.02599 1.03530 1.89312 1.21398 0.93164 0.88264 0.91139 0.90367 1.23114 0.92958 0.98884 1.02104 1.22822 0.99596 1.00028 0.79637 1.48429 1.16271 1.59611 1.09538 1.18038 0.86383 0.77518 0.82673 1.90857 1.68986 1.56859 1.28669 1.20252 0.92835 1.04995 0.96302 1.21501 0.95932 1.00753 0.97510 1.26144 0.98721 1.06319 1.01934 1.82590 1.02384 1.50557 1.07651 1.25347 1.03919 1.11832 1.00655 1.20274 0.89616 0.73073 0.89436 1.93058 1.65570 1.78024 1.81562 1.92999 1.92264 1.38098 1.96154 1.22772 0.82528 0.96547 1.01472 0.93223 0.79804 0.90918 0.86537 0.87775 0.87939 0.80659 0.76505 0.81682 0.93952 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.41 13.97 21.65 0.30 -63.11 16 2 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 3 Si 0.95 45.79 27.74 68.60 1.90 47.69 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.26 -11.46 6.52 99.48 0.65 -10.82 16 6 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 7 C -0.24 -13.63 10.44 84.03 0.88 -12.75 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 9 N -0.74 -34.05 4.95 -317.32 -1.57 -35.62 16 10 C 0.17 6.19 3.61 46.18 0.17 6.36 16 11 H 0.08 2.85 8.09 -2.38 -0.02 2.83 16 12 C -0.13 -3.24 6.71 31.99 0.21 -3.02 16 13 C 0.10 2.06 5.25 86.85 0.46 2.52 16 14 N -0.61 -19.32 3.33 -815.95 -2.71 -22.04 16 15 C 0.57 19.74 7.24 86.60 0.63 20.36 16 16 O -0.57 -25.61 14.53 -4.16 -0.06 -25.67 16 17 C -0.12 -3.03 5.55 -19.87 -0.11 -3.14 16 18 C -0.13 -1.85 8.38 22.67 0.19 -1.66 16 19 C -0.20 -1.53 11.12 66.64 0.74 -0.79 16 20 S 0.30 2.87 22.95 -56.49 -1.30 1.57 16 21 C -0.30 -6.30 5.78 25.17 0.15 -6.16 16 22 C 0.33 8.03 5.08 71.23 0.36 8.39 16 23 F -0.20 -6.62 15.11 44.97 0.68 -5.94 16 24 F -0.21 -6.71 16.95 44.97 0.76 -5.95 16 25 C 0.09 3.67 6.62 86.73 0.57 4.24 16 26 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 27 H 0.37 16.29 5.62 -92.71 -0.52 15.77 16 28 H 0.07 1.85 8.01 -2.39 -0.02 1.83 16 29 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.10 1.62 6.54 -2.39 -0.02 1.60 16 31 H 0.10 1.51 7.47 -2.39 -0.02 1.49 16 32 H 0.18 1.79 6.05 -2.91 -0.02 1.77 16 33 H 0.22 -0.08 8.06 -2.91 -0.02 -0.10 16 34 H 0.17 2.12 8.11 -2.39 -0.02 2.10 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.69 8.03 -2.39 -0.02 1.67 16 Total: -1.00 -85.45 320.19 3.27 -82.18 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.56 Total: 15.57 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 4.71 Total: 11.31 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -3.98 Total: -120.77 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.67 kcal Atomic # 9 Polarization: -13.33 SS G_CDS: 1.44 Total: -11.89 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.30 Total: 1.57 kcal Total: -85.45 3.27 -82.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970597123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.224 kcal (2) G-P(sol) polarization free energy of solvation -85.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds