Wall clock time and date at job start Tue Mar 31 2020 11:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00341 * 2 1 4 4 H 1.48501 * 109.47143 * 270.00110 * 3 2 1 5 5 H 1.48501 * 109.46840 * 30.00134 * 3 2 1 6 6 H 1.48501 * 109.47278 * 150.00158 * 3 2 1 7 7 C 1.38815 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00385 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99768 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64698 * 0.02562 * 9 7 2 11 11 C 1.54320 * 107.26880 * 178.92214 * 10 9 7 12 12 C 1.55160 * 102.94325 * 337.80552 * 11 10 9 13 13 H 1.08995 * 111.00304 * 277.38778 * 12 11 10 14 14 N 1.46504 * 111.00321 * 153.57875 * 12 11 10 15 15 C 1.34769 * 120.00014 * 155.00311 * 14 12 11 16 16 O 1.21641 * 120.00105 * 359.97438 * 15 14 12 17 17 C 1.47184 * 120.00111 * 179.97438 * 15 14 12 18 18 C 1.44427 * 123.46216 * 0.02562 * 17 15 14 19 19 C 1.32772 * 113.08659 * 179.97438 * 18 17 15 20 20 S 1.75506 * 110.57234 * 0.02562 * 19 18 17 21 21 C 1.36011 * 123.46085 * 179.97438 * 17 15 14 22 22 C 1.50695 * 124.59282 * 0.02562 * 21 17 15 23 23 F 1.39907 * 109.47146 * 299.97210 * 22 21 17 24 24 F 1.39898 * 109.47624 * 59.97078 * 22 21 17 25 25 C 1.47422 * 125.64559 * 180.02562 * 9 7 2 26 26 H 0.97004 * 119.99620 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.88097 * 59.50431 * 10 9 7 28 28 H 1.08999 * 109.88472 * 298.33625 * 10 9 7 29 29 H 1.09004 * 110.72151 * 219.43978 * 11 10 9 30 30 H 1.09004 * 110.87774 * 96.24312 * 11 10 9 31 31 H 0.96996 * 119.99865 * 334.99746 * 14 12 11 32 32 H 1.07997 * 123.45480 * 359.97438 * 18 17 15 33 33 H 1.07994 * 124.71193 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.47459 * 179.97438 * 22 21 17 35 35 H 1.09001 * 110.36674 * 85.31059 * 25 9 7 36 36 H 1.08997 * 110.36917 * 322.98151 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1376 -2.5327 -0.0028 11 6 -0.4486 -4.0440 -0.0314 12 6 0.8522 -4.6554 -0.6159 13 1 0.8576 -4.5951 -1.7042 14 7 1.0290 -6.0393 -0.1687 15 6 1.7597 -6.8979 -0.9070 16 8 2.2721 -6.5240 -1.9450 17 6 1.9378 -8.2881 -0.4575 18 6 1.3635 -8.8111 0.7601 19 6 1.6541 -10.0902 0.9653 20 16 2.6533 -10.7122 -0.3366 21 6 2.6592 -9.2125 -1.1466 22 6 3.3685 -8.9466 -2.4494 23 9 2.4376 -8.5456 -3.4138 24 9 4.3160 -7.9337 -2.2664 25 6 1.9333 -3.7312 -0.0017 26 1 -0.4850 0.8401 0.0004 27 1 -0.5570 -2.0511 -0.8861 28 1 -0.5551 -2.0854 0.8993 29 1 -1.2982 -4.2507 -0.6823 30 1 -0.6343 -4.4215 0.9742 31 1 0.6202 -6.3376 0.6588 32 1 0.7596 -8.2221 1.4345 33 1 1.3219 -10.6677 1.8153 34 1 3.8685 -9.8558 -2.7831 35 1 2.1651 -4.0428 1.0168 36 1 2.8335 -3.7401 -0.6162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016125037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:30 Heat of formation + Delta-G solvation = -69.945480 kcal Electronic energy + Delta-G solvation = -24121.863713 eV Core-core repulsion = 20176.486744 eV Total energy + Delta-G solvation = -3945.376969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -48.83410 -46.84207 -39.91964 -37.68581 -36.73942 -34.03995 -31.86967 -31.33198 -29.21412 -27.76325 -26.40654 -24.54622 -23.52183 -21.90248 -20.33428 -20.15421 -19.48189 -18.71480 -17.42207 -17.12955 -16.81918 -16.33224 -16.07119 -15.38017 -14.87049 -14.73919 -14.49832 -14.12077 -13.71806 -13.62831 -13.18751 -13.09391 -12.93928 -12.83026 -12.47338 -12.38297 -12.16588 -11.77965 -11.52365 -11.33770 -10.99100 -10.87679 -10.73334 -10.35337 -10.07858 -9.88648 -9.77221 -9.65180 -9.54258 -8.91490 -8.66862 -8.56133 -6.81220 -5.68712 -3.02039 0.22848 0.94965 1.37513 1.66066 3.29215 3.36054 3.44022 3.48845 3.50623 3.56589 3.93679 4.42052 4.53565 4.55029 4.88751 4.93375 4.99485 5.28596 5.42797 5.48084 5.50663 5.64764 5.74103 5.78661 5.82485 6.20959 6.33532 6.43692 6.60497 6.73747 6.99455 7.55781 7.59997 7.68700 7.84139 8.27034 8.37713 9.24717 9.84541 10.49473 11.43280 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.003142 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.716235 B = 8909.007053 C = 9438.010242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.149 4.149 12 C 0.128 3.872 13 H 0.099 0.901 14 N -0.707 5.707 15 C 0.563 3.437 16 O -0.513 6.513 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.214 4.214 20 S 0.219 5.781 21 C -0.262 4.262 22 C 0.357 3.643 23 F -0.182 7.182 24 F -0.180 7.180 25 C 0.130 3.870 26 H 0.252 0.748 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.396 0.604 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.112 0.888 35 H 0.019 0.981 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -26.051 1.777 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.188 4.188 12 C 0.023 3.977 13 H 0.117 0.883 14 N -0.357 5.357 15 C 0.346 3.654 16 O -0.389 6.389 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.350 4.350 20 S 0.486 5.514 21 C -0.382 4.382 22 C 0.302 3.698 23 F -0.163 7.163 24 F -0.161 7.161 25 C 0.002 3.998 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.230 0.770 32 H 0.174 0.826 33 H 0.194 0.806 34 H 0.129 0.871 35 H 0.037 0.963 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.807 -26.908 0.711 27.064 hybrid contribution -0.517 2.257 0.853 2.468 sum 2.290 -24.651 1.564 24.807 Atomic orbital electron populations 1.69946 1.04874 1.25031 1.57308 1.24797 0.95755 0.97666 1.02259 0.86091 0.78556 0.83346 0.77614 1.21552 1.21688 1.20692 1.19089 0.90529 0.82273 1.43565 0.90364 1.44395 1.01631 0.99802 1.87244 1.21141 0.84536 0.87375 1.01480 1.23189 0.95874 1.00063 0.99682 1.22358 0.96910 0.78186 1.00217 0.88315 1.45821 1.52538 1.11580 1.25803 1.17539 0.79572 0.83924 0.84342 1.90897 1.47093 1.77777 1.23105 1.20469 1.00495 0.95425 0.95782 1.21313 1.01384 0.95068 0.96415 1.25588 1.05725 0.99454 1.04212 1.82860 1.47762 1.07396 1.13424 1.25198 1.08065 1.01118 1.03848 1.19348 0.79728 0.88476 0.82278 1.93069 1.67050 1.92380 1.63781 1.93081 1.64030 1.63561 1.95441 1.21821 0.94882 0.86119 0.96957 0.93766 0.93210 0.93560 0.91579 0.92094 0.76995 0.82604 0.80635 0.87060 0.96300 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.52 10.28 -15.05 -0.15 -6.68 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.95 3.39 -170.07 -0.58 -16.52 16 10 C 0.18 4.37 5.37 -3.07 -0.02 4.36 16 11 C -0.15 -2.72 6.60 -24.90 -0.16 -2.88 16 12 C 0.13 2.41 3.42 -65.77 -0.23 2.18 16 13 H 0.10 2.07 7.54 -51.93 -0.39 1.68 16 14 N -0.71 -10.62 5.18 -52.86 -0.27 -10.89 16 15 C 0.56 9.14 7.75 -12.63 -0.10 9.04 16 16 O -0.51 -10.33 12.40 5.24 0.07 -10.27 16 17 C -0.10 -1.28 5.98 -104.63 -0.63 -1.91 16 18 C -0.11 -0.98 9.91 -39.02 -0.39 -1.37 16 19 C -0.21 -1.42 11.12 28.86 0.32 -1.10 16 20 S 0.22 1.52 22.95 -107.50 -2.47 -0.95 16 21 C -0.26 -2.95 5.78 -35.11 -0.20 -3.16 16 22 C 0.36 4.37 5.03 36.00 0.18 4.55 16 23 F -0.18 -2.77 15.71 2.25 0.04 -2.73 16 24 F -0.18 -2.82 15.71 2.25 0.04 -2.78 16 25 C 0.13 2.88 6.93 -2.52 -0.02 2.86 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 28 H 0.05 1.22 7.51 -51.93 -0.39 0.84 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 31 H 0.40 4.60 7.11 -40.82 -0.29 4.31 16 32 H 0.16 1.01 7.10 -52.49 -0.37 0.64 16 33 H 0.18 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.11 0.83 8.11 -51.93 -0.42 0.40 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -35.21 321.56 -8.17 -43.38 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.90 Total: -0.37 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.48 Total: 5.55 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.28 Total: -54.27 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.07 Total: -5.51 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.47 Total: -0.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.21 -8.17 -43.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016125037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.563 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds