Wall clock time and date at job start Tue Mar 31 2020 11:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99808 * 2 1 4 4 H 1.48498 * 109.47160 * 269.99808 * 3 2 1 5 5 H 1.48500 * 109.47294 * 30.00276 * 3 2 1 6 6 H 1.48506 * 109.47033 * 150.00264 * 3 2 1 7 7 C 1.38816 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99603 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00115 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.77874 * 36.77898 * 10 9 7 12 12 C 1.55396 * 110.85517 * 160.08454 * 10 9 7 13 13 C 1.54913 * 101.66801 * 153.69692 * 12 10 9 14 14 N 1.47423 * 104.83151 * 323.07547 * 13 12 10 15 15 C 1.34769 * 125.65104 * 204.09245 * 14 13 12 16 16 O 1.21641 * 120.00633 * 175.15980 * 15 14 13 17 17 C 1.47191 * 119.99738 * 355.16097 * 15 14 13 18 18 C 1.36007 * 123.45937 * 326.26424 * 17 15 14 19 19 S 1.70452 * 110.81692 * 179.97438 * 18 17 15 20 20 C 1.75506 * 92.44518 * 0.02562 * 19 18 17 21 21 C 1.32770 * 110.57497 * 359.73371 * 20 19 18 22 22 C 1.50697 * 123.46232 * 180.23032 * 21 20 19 23 23 F 1.39901 * 109.46823 * 22.51136 * 22 21 20 24 24 F 1.39900 * 109.47419 * 142.50883 * 22 21 20 25 25 C 1.47032 * 108.70370 * 24.12611 * 14 13 12 26 26 H 0.96998 * 119.99989 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00437 * 359.97438 * 9 7 2 28 28 H 1.09004 * 110.89426 * 35.62752 * 12 10 9 29 29 H 1.09005 * 111.03794 * 271.82990 * 12 10 9 30 30 H 1.08998 * 110.36755 * 204.23302 * 13 12 10 31 31 H 1.09010 * 110.45945 * 81.95576 * 13 12 10 32 32 H 1.07997 * 124.59866 * 359.97438 * 18 17 15 33 33 H 1.07994 * 124.71182 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.47394 * 262.51551 * 22 21 20 35 35 H 1.08998 * 109.88239 * 118.35836 * 25 14 13 36 36 H 1.08999 * 109.88179 * 239.37282 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9579 -3.5833 0.6125 12 6 1.1519 -4.8183 0.4961 13 6 1.8011 -6.0404 -0.2001 14 7 2.2232 -5.5417 -1.5216 15 6 2.4084 -6.2956 -2.6233 16 8 2.6732 -5.7656 -3.6856 17 6 2.2901 -7.7605 -2.5409 18 6 2.6511 -8.4815 -1.4457 19 16 2.3784 -10.1449 -1.6987 20 6 1.7625 -9.8741 -3.3197 21 6 1.7739 -8.5793 -3.6129 22 6 1.3011 -8.0215 -4.9306 23 9 0.4229 -8.9288 -5.5328 24 9 0.6406 -6.8075 -4.7131 25 6 2.4094 -4.0856 -1.4386 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3881 0.0005 28 1 0.1238 -4.6788 0.1617 29 1 1.1983 -4.9163 1.5808 30 1 1.0733 -6.8439 -0.3125 31 1 2.6644 -6.3882 0.3675 32 1 3.0558 -8.0577 -0.5385 33 1 1.4182 -10.6523 -3.9847 34 1 2.1579 -7.8570 -5.5839 35 1 3.4463 -3.8313 -1.6586 36 1 1.7473 -3.5863 -2.1460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018856269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:25 Heat of formation + Delta-G solvation = -101.984237 kcal Electronic energy + Delta-G solvation = -24085.771073 eV Core-core repulsion = 20139.004799 eV Total energy + Delta-G solvation = -3946.766274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.01426 -48.03474 -41.27564 -39.00757 -37.93999 -35.96909 -33.48193 -31.78742 -31.04130 -29.13381 -27.95672 -26.30476 -25.16787 -23.58649 -22.08238 -21.20845 -20.18458 -19.35299 -18.76500 -18.48230 -18.30563 -17.84792 -17.52111 -16.84008 -16.48982 -16.06084 -15.52602 -15.31993 -15.12350 -14.88326 -14.46958 -14.40862 -14.25230 -14.01379 -13.88868 -13.82246 -13.55081 -13.43302 -13.08569 -12.91211 -12.70013 -12.52701 -12.40279 -12.13778 -11.89109 -11.76377 -11.61945 -11.12059 -10.97467 -10.15913 -9.75180 -9.41662 -9.11497 -7.98128 -5.28597 -0.29191 0.44717 0.62083 0.78238 1.46572 1.48984 1.56596 1.80773 2.13616 2.54747 2.76478 3.30400 3.32950 3.48846 3.58918 3.65191 3.88480 3.91771 3.97843 4.05865 4.27386 4.33102 4.40782 4.47673 4.52651 4.63271 4.83383 4.86850 4.96703 4.99066 5.15919 5.25960 5.36549 5.50961 6.23403 6.48952 7.05603 7.30161 8.02288 8.25074 9.24979 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.021878 B = 0.003247 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.532559 B = 8620.445110 C = 9367.465089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.726 5.726 10 C 0.167 3.833 11 H 0.078 0.922 12 C -0.131 4.131 13 C 0.104 3.896 14 N -0.607 5.607 15 C 0.577 3.423 16 O -0.579 6.579 17 C -0.155 4.155 18 C -0.210 4.210 19 S 0.310 5.690 20 C -0.197 4.197 21 C -0.168 4.168 22 C 0.329 3.671 23 F -0.201 7.201 24 F -0.213 7.213 25 C 0.095 3.905 26 H 0.252 0.748 27 H 0.375 0.625 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.199 0.801 33 H 0.200 0.800 34 H 0.136 0.864 35 H 0.049 0.951 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 -28.026 -0.581 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.056 3.944 11 H 0.096 0.904 12 C -0.169 4.169 13 C -0.018 4.018 14 N -0.340 5.340 15 C 0.366 3.634 16 O -0.461 6.461 17 C -0.172 4.172 18 C -0.348 4.348 19 S 0.578 5.422 20 C -0.333 4.333 21 C -0.180 4.180 22 C 0.273 3.727 23 F -0.183 7.183 24 F -0.194 7.194 25 C -0.031 4.031 26 H 0.061 0.939 27 H 0.208 0.792 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.216 0.784 33 H 0.217 0.783 34 H 0.153 0.847 35 H 0.068 0.932 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.289 -28.947 -0.256 29.623 hybrid contribution -0.544 3.081 -1.469 3.457 sum 5.745 -25.865 -1.725 26.552 Atomic orbital electron populations 1.69813 1.06669 1.26195 1.59114 1.25571 0.96334 1.01166 1.03328 0.85172 0.77991 0.79563 0.77228 1.21992 1.22042 1.18910 1.19655 0.91602 0.85086 1.41545 0.90263 1.42539 1.05495 1.00707 1.87768 1.21475 0.95810 0.85692 0.91390 0.90404 1.23064 0.98694 0.93025 1.02123 1.22710 1.00369 0.97127 0.81587 1.48425 1.66364 1.08077 1.11098 1.17841 0.76679 0.86604 0.82325 1.90762 1.50998 1.74909 1.29402 1.19625 1.09659 0.92359 0.95565 1.26184 1.04766 1.01467 1.02372 1.82847 1.54849 0.99312 1.05162 1.25744 1.05641 0.98525 1.03366 1.20262 1.07201 0.94397 0.96186 1.20085 0.87411 0.72925 0.92271 1.92966 1.72839 1.67765 1.84699 1.93016 1.83546 1.46975 1.95876 1.22827 0.99486 0.79496 1.01284 0.93942 0.79241 0.92047 0.87036 0.88704 0.87606 0.78364 0.78280 0.84681 0.93212 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.25 -13.59 9.98 84.04 0.84 -12.75 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -36.06 5.18 -316.93 -1.64 -37.70 16 10 C 0.17 6.25 3.60 46.26 0.17 6.41 16 11 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 12 C -0.13 -3.60 6.71 32.07 0.22 -3.39 16 13 C 0.10 2.27 5.28 86.86 0.46 2.73 16 14 N -0.61 -19.47 3.33 -815.88 -2.71 -22.18 16 15 C 0.58 19.62 6.86 86.60 0.59 20.21 16 16 O -0.58 -24.64 15.20 -4.16 -0.06 -24.70 16 17 C -0.16 -3.76 5.49 -19.87 -0.11 -3.87 16 18 C -0.21 -3.13 9.09 67.30 0.61 -2.52 16 19 S 0.31 2.72 23.02 -56.49 -1.30 1.42 16 20 C -0.20 -2.71 10.48 66.64 0.70 -2.01 16 21 C -0.17 -3.71 5.78 -19.46 -0.11 -3.83 16 22 C 0.33 8.42 5.13 71.24 0.37 8.78 16 23 F -0.20 -4.72 16.69 44.97 0.75 -3.97 16 24 F -0.21 -7.55 14.84 44.97 0.67 -6.88 16 25 C 0.10 3.76 6.62 86.73 0.57 4.34 16 26 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 27 H 0.38 20.15 7.72 -92.71 -0.72 19.44 16 28 H 0.06 1.92 8.01 -2.39 -0.02 1.90 16 29 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.09 1.72 7.18 -2.39 -0.02 1.70 16 31 H 0.11 1.54 7.13 -2.38 -0.02 1.52 16 32 H 0.20 2.05 6.09 -2.91 -0.02 2.03 16 33 H 0.20 1.76 7.85 -2.91 -0.02 1.73 16 34 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.03 1.42 8.03 -2.39 -0.02 1.40 16 Total: -1.00 -76.98 323.40 3.20 -73.78 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.42 Total: 20.60 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 4.77 Total: 10.47 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -4.07 Total: -119.03 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 1.42 Total: -10.85 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.30 Total: 1.42 kcal Total: -76.98 3.20 -73.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018856269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.205 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds