Wall clock time and date at job start Tue Mar 31 2020 11:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48493 * 109.46989 * 240.00185 * 3 2 1 5 5 H 1.48497 * 109.47430 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46904 * 120.00488 * 3 2 1 7 7 C 1.38808 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00177 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00197 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.91720 * 37.44380 * 10 9 7 12 12 C 1.55147 * 111.00773 * 161.34737 * 10 9 7 13 13 C 1.54332 * 103.02141 * 153.38098 * 12 10 9 14 14 N 1.47020 * 107.26576 * 338.14032 * 13 12 10 15 15 C 1.34775 * 125.65041 * 178.84831 * 14 13 12 16 16 O 1.21630 * 120.00398 * 184.91181 * 15 14 13 17 17 C 1.47197 * 119.99668 * 4.91094 * 15 14 13 18 18 C 1.44422 * 123.46291 * 314.42067 * 17 15 14 19 19 C 1.32766 * 113.08267 * 179.73507 * 18 17 15 20 20 S 1.75500 * 110.57791 * 0.26221 * 19 18 17 21 21 C 1.36016 * 123.45760 * 134.66769 * 17 15 14 22 22 C 1.50693 * 124.59243 * 359.97438 * 21 17 15 23 23 F 1.39910 * 109.46987 * 202.52696 * 22 21 17 24 24 F 1.39900 * 109.47493 * 322.52659 * 22 21 17 25 25 C 1.47423 * 108.70245 * 358.58632 * 14 13 12 26 26 H 0.97003 * 119.99987 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99960 * 359.97438 * 9 7 2 28 28 H 1.09003 * 110.72466 * 271.94308 * 12 10 9 29 29 H 1.09005 * 110.72017 * 35.21397 * 12 10 9 30 30 H 1.09005 * 109.98839 * 218.66531 * 13 12 10 31 31 H 1.08999 * 109.78023 * 97.49896 * 13 12 10 32 32 H 1.08003 * 123.45829 * 359.97438 * 18 17 15 33 33 H 1.08008 * 124.71229 * 180.27029 * 19 18 17 34 34 H 1.09000 * 109.47266 * 82.53164 * 22 21 17 35 35 H 1.08999 * 110.36749 * 143.19005 * 25 14 13 36 36 H 1.08992 * 110.36745 * 265.40540 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9526 -3.5897 0.6185 12 6 1.1476 -4.8246 0.4627 13 6 1.7798 -6.0526 -0.2259 14 7 2.5591 -5.5581 -1.3703 15 6 3.2825 -6.3188 -2.2156 16 8 3.9616 -5.7933 -3.0770 17 6 3.2506 -7.7855 -2.0962 18 6 3.3666 -8.4848 -0.8379 19 6 3.3063 -9.8047 -0.9684 20 16 3.1105 -10.2495 -2.6548 21 6 3.1137 -8.6217 -3.1603 22 6 2.9768 -8.1699 -4.5913 23 9 2.3595 -9.1769 -5.3412 24 9 2.1990 -7.0081 -4.6413 25 6 2.4130 -4.0929 -1.4439 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3881 0.0002 28 1 1.1772 -4.9299 1.5472 29 1 0.1246 -4.6769 0.1163 30 1 0.9982 -6.7282 -0.5738 31 1 2.4361 -6.5705 0.4734 32 1 3.4861 -7.9852 0.1121 33 1 3.3689 -10.5071 -0.1504 34 1 3.9646 -7.9638 -5.0035 35 1 3.3499 -3.6337 -1.7593 36 1 1.6102 -3.8258 -2.1310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019716632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:14 Heat of formation + Delta-G solvation = -78.403470 kcal Electronic energy + Delta-G solvation = -24067.735772 eV Core-core repulsion = 20121.992037 eV Total energy + Delta-G solvation = -3945.743735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.18111 -47.18168 -40.09899 -37.77649 -36.82688 -34.15172 -31.58672 -31.39690 -29.67368 -28.17590 -26.51127 -24.38612 -23.40091 -22.77483 -20.93982 -20.15065 -19.15866 -18.50305 -17.67986 -17.44881 -17.06913 -16.32831 -16.09780 -15.80998 -15.20166 -14.58938 -14.42321 -14.04537 -13.99071 -13.62460 -13.55364 -13.30934 -13.15968 -12.87100 -12.83855 -12.71665 -12.40620 -12.12372 -11.62505 -11.57468 -11.26992 -11.09743 -10.84022 -10.72675 -10.35358 -10.08350 -9.90345 -9.75325 -9.44214 -9.02227 -8.80464 -8.36420 -7.09434 -5.84543 -3.15554 0.31444 1.00942 1.45432 1.78118 2.93353 3.22049 3.36840 3.42264 3.46850 3.47818 3.94903 4.38459 4.53922 4.54140 4.65337 4.79956 4.89603 4.95702 5.19482 5.26604 5.36321 5.50198 5.60627 5.71333 5.75681 5.81216 5.91946 6.10267 6.23140 6.35910 6.48755 6.58576 6.86205 7.64716 7.68903 8.23220 8.33135 9.45015 9.97600 10.32542 11.37399 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.003163 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.862291 B = 8850.341829 C = 9433.463771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.250 4.250 8 H 0.072 0.928 9 N -0.711 5.711 10 C 0.173 3.827 11 H 0.065 0.935 12 C -0.140 4.140 13 C 0.103 3.897 14 N -0.602 5.602 15 C 0.585 3.415 16 O -0.533 6.533 17 C -0.099 4.099 18 C -0.112 4.112 19 C -0.219 4.219 20 S 0.228 5.772 21 C -0.268 4.268 22 C 0.347 3.653 23 F -0.199 7.199 24 F -0.180 7.180 25 C 0.082 3.918 26 H 0.258 0.742 27 H 0.387 0.613 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.134 0.866 35 H 0.073 0.927 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -24.318 -2.125 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.179 4.179 13 C -0.020 4.020 14 N -0.335 5.335 15 C 0.371 3.629 16 O -0.411 6.411 17 C -0.118 4.118 18 C -0.141 4.141 19 C -0.354 4.354 20 S 0.495 5.505 21 C -0.389 4.389 22 C 0.291 3.709 23 F -0.180 7.180 24 F -0.161 7.161 25 C -0.042 4.042 26 H 0.067 0.933 27 H 0.222 0.778 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.193 0.807 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.690 -25.276 -3.378 26.128 hybrid contribution 0.085 2.284 0.720 2.396 sum 5.776 -22.992 -2.658 23.855 Atomic orbital electron populations 1.69649 1.05176 1.26075 1.56859 1.24765 0.95524 0.97850 1.02267 0.86243 0.78569 0.83238 0.77991 1.21056 1.21621 1.21126 1.19213 0.91123 0.83889 1.43844 0.90961 1.42295 1.05800 0.99357 1.87681 1.21305 0.94621 0.86118 0.91930 0.91719 1.22919 1.00438 0.94116 1.00432 1.22143 0.94651 0.97555 0.87668 1.48374 1.47294 1.09306 1.28501 1.17141 0.79809 0.84743 0.81210 1.90809 1.41364 1.73782 1.35144 1.20244 1.04660 0.94761 0.92170 1.21337 1.02094 0.92997 0.97684 1.25677 1.09454 0.99667 1.00622 1.83066 1.68189 1.00529 0.98701 1.25111 1.13471 1.01148 0.99121 1.19654 0.92295 0.73583 0.85350 1.93013 1.85776 1.61425 1.77798 1.93091 1.77587 1.48772 1.96655 1.23492 1.02173 0.76488 1.02089 0.93270 0.77808 0.90035 0.90351 0.91744 0.91584 0.82408 0.80655 0.84939 0.90816 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.76 9.98 -15.06 -0.15 -6.91 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.12 5.28 -51.35 -0.27 -17.39 16 10 C 0.17 3.27 3.69 -65.79 -0.24 3.03 16 11 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 12 C -0.14 -2.05 6.57 -24.90 -0.16 -2.21 16 13 C 0.10 1.31 5.76 -3.06 -0.02 1.29 16 14 N -0.60 -9.73 3.33 -171.87 -0.57 -10.30 16 15 C 0.59 9.73 6.39 -12.62 -0.08 9.65 16 16 O -0.53 -10.55 15.90 5.25 0.08 -10.47 16 17 C -0.10 -1.28 5.44 -104.62 -0.57 -1.85 16 18 C -0.11 -1.06 9.07 -39.02 -0.35 -1.42 16 19 C -0.22 -1.60 11.12 28.86 0.32 -1.28 16 20 S 0.23 1.87 22.50 -107.50 -2.42 -0.55 16 21 C -0.27 -3.16 6.09 -35.11 -0.21 -3.37 16 22 C 0.35 4.27 5.21 36.00 0.19 4.45 16 23 F -0.20 -2.33 16.89 2.25 0.04 -2.29 16 24 F -0.18 -2.88 15.16 2.25 0.03 -2.84 16 25 C 0.08 1.57 6.63 -2.53 -0.02 1.56 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.39 9.83 7.71 -40.82 -0.31 9.52 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.18 8.00 -51.93 -0.42 0.77 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.67 6.04 -51.93 -0.31 0.36 16 32 H 0.16 1.26 6.23 -52.48 -0.33 0.93 16 33 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.52 7.99 -51.93 -0.41 1.11 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -32.48 325.28 -7.77 -40.24 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.87 Total: 5.71 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.40 Total: 2.63 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.12 Total: -54.44 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.07 Total: -5.13 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.42 Total: -0.55 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.48 -7.77 -40.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019716632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.161 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds