Wall clock time and date at job start Tue Mar 31 2020 11:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 119.99980 * 2 1 4 4 H 1.48505 * 109.47095 * 269.99852 * 3 2 1 5 5 H 1.48499 * 109.47503 * 30.00134 * 3 2 1 6 6 H 1.48504 * 109.47315 * 150.00180 * 3 2 1 7 7 C 1.38823 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00044 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.91306 * 37.45099 * 10 9 7 12 12 C 1.55154 * 111.00436 * 161.35123 * 10 9 7 13 13 C 1.54337 * 103.01905 * 153.38451 * 12 10 9 14 14 N 1.47024 * 107.26552 * 338.14144 * 13 12 10 15 15 C 1.34769 * 125.64856 * 178.85571 * 14 13 12 16 16 O 1.21699 * 120.00238 * 179.68941 * 15 14 13 17 17 C 1.46588 * 119.99949 * 359.68097 * 15 14 13 18 18 S 1.75827 * 125.45796 * 5.96164 * 17 15 14 19 19 C 1.70615 * 91.56476 * 179.83959 * 18 17 15 20 20 C 1.33817 * 110.95260 * 0.31230 * 19 18 17 21 21 C 1.36650 * 125.45846 * 185.97877 * 17 15 14 22 22 C 1.50707 * 123.35128 * 359.94286 * 21 17 15 23 23 F 1.39899 * 109.47215 * 295.85727 * 22 21 17 24 24 F 1.39900 * 109.46491 * 55.85327 * 22 21 17 25 25 C 1.47424 * 108.70132 * 358.58462 * 14 13 12 26 26 H 0.96996 * 120.00257 * 0.02562 * 1 2 3 27 27 H 0.97007 * 120.00392 * 359.97438 * 9 7 2 28 28 H 1.09004 * 110.71582 * 271.94028 * 12 10 9 29 29 H 1.08997 * 110.72239 * 35.21643 * 12 10 9 30 30 H 1.08994 * 109.98933 * 218.66479 * 13 12 10 31 31 H 1.09002 * 109.77823 * 97.49499 * 13 12 10 32 32 H 1.07995 * 124.52802 * 180.17586 * 19 18 17 33 33 H 1.07999 * 122.45039 * 179.89289 * 20 19 18 34 34 H 1.09000 * 109.47070 * 175.84774 * 22 21 17 35 35 H 1.09003 * 110.36705 * 143.19901 * 25 14 13 36 36 H 1.09008 * 110.36673 * 265.40880 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0017 11 1 2.9531 -3.5900 0.6168 12 6 1.1479 -4.8249 0.4617 13 6 1.7796 -6.0526 -0.2280 14 7 2.5582 -5.5575 -1.3726 15 6 3.2809 -6.3178 -2.2188 16 8 3.8841 -5.7986 -3.1394 17 6 3.3405 -7.7703 -2.0300 18 16 2.4142 -8.6841 -0.8475 19 6 3.1112 -10.1523 -1.3667 20 6 3.9844 -9.9429 -2.3589 21 6 4.1253 -8.6310 -2.7447 22 6 5.0521 -8.1863 -3.8468 23 9 4.3026 -7.6429 -4.8956 24 9 5.9331 -7.2183 -3.3528 25 6 2.4121 -4.0923 -1.4455 26 1 -0.4850 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0002 28 1 1.1784 -4.9306 1.5461 29 1 0.1248 -4.6770 0.1161 30 1 0.9979 -6.7279 -0.5756 31 1 2.4364 -6.5708 0.4708 32 1 2.8805 -11.1210 -0.9488 33 1 4.5348 -10.7464 -2.8257 34 1 5.6201 -9.0423 -4.2113 35 1 3.3488 -3.6329 -1.7614 36 1 1.6087 -3.8249 -2.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019717566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:54 Heat of formation + Delta-G solvation = -77.444518 kcal Electronic energy + Delta-G solvation = -24138.419494 eV Core-core repulsion = 20192.717342 eV Total energy + Delta-G solvation = -3945.702152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.74111 -46.74132 -39.91876 -38.35517 -37.01694 -34.21178 -31.75315 -30.55741 -29.74805 -28.37823 -27.00413 -24.31104 -23.47099 -22.67448 -21.03464 -20.03856 -19.30006 -18.23170 -17.37387 -17.02695 -16.98063 -16.43715 -16.02950 -15.92077 -14.92142 -14.66947 -14.58726 -14.13818 -13.63018 -13.49384 -13.33205 -13.14926 -13.06684 -12.94103 -12.76127 -12.55751 -12.38479 -12.23738 -11.95407 -11.34458 -11.14783 -10.92119 -10.77995 -10.73142 -10.38115 -10.07280 -9.91716 -9.76716 -9.26370 -9.04788 -8.97105 -8.41062 -7.11065 -5.85668 -3.16706 0.14462 1.09052 1.55804 1.93666 3.01123 3.16337 3.41869 3.47732 3.48481 3.75000 4.10643 4.35609 4.52531 4.67647 4.79341 4.81171 4.99049 5.05660 5.09782 5.19560 5.39684 5.45777 5.60012 5.68124 5.75701 5.81927 5.86082 6.05817 6.18053 6.30267 6.43984 6.55739 6.83189 7.61075 7.65166 8.21088 8.31824 9.44106 9.95801 10.30888 11.36305 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.003459 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.999547 B = 8093.137148 C = 9083.688999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.711 5.711 10 C 0.173 3.827 11 H 0.066 0.934 12 C -0.134 4.134 13 C 0.090 3.910 14 N -0.607 5.607 15 C 0.586 3.414 16 O -0.508 6.508 17 C -0.212 4.212 18 S 0.257 5.743 19 C -0.259 4.259 20 C -0.124 4.124 21 C -0.129 4.129 22 C 0.341 3.659 23 F -0.189 7.189 24 F -0.188 7.188 25 C 0.085 3.915 26 H 0.257 0.743 27 H 0.388 0.612 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.172 0.828 33 H 0.148 0.852 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -24.609 -1.024 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.172 4.172 13 C -0.035 4.035 14 N -0.341 5.341 15 C 0.372 3.628 16 O -0.385 6.385 17 C -0.334 4.334 18 S 0.527 5.473 19 C -0.396 4.396 20 C -0.154 4.154 21 C -0.146 4.146 22 C 0.285 3.715 23 F -0.170 7.170 24 F -0.169 7.169 25 C -0.040 4.040 26 H 0.067 0.933 27 H 0.222 0.778 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.189 0.811 33 H 0.165 0.835 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.489 -23.803 -0.415 24.226 hybrid contribution 1.105 0.292 -1.156 1.625 sum 5.593 -23.511 -1.571 24.218 Atomic orbital electron populations 1.69653 1.05180 1.25986 1.56918 1.24766 0.95527 0.97866 1.02222 0.86167 0.78701 0.83492 0.77685 1.21507 1.21699 1.20592 1.19259 0.91186 0.83833 1.43768 0.90865 1.42295 1.05796 0.99325 1.87654 1.21318 0.94661 0.86087 0.91930 0.91563 1.22871 1.00436 0.93440 1.00500 1.22165 0.94978 0.97994 0.88370 1.48381 1.47683 1.09676 1.28389 1.16550 0.80006 0.83760 0.82462 1.90917 1.44157 1.72755 1.30636 1.24825 1.05898 0.98285 1.04347 1.83539 1.38556 0.93852 1.31388 1.25572 1.04453 1.05671 1.03950 1.19608 1.01268 0.95404 0.99154 1.20033 1.00752 0.93684 1.00091 1.19760 0.83178 0.87100 0.81451 1.93043 1.77878 1.88018 1.58060 1.93049 1.68916 1.66745 1.88227 1.23507 1.02362 0.76020 1.02121 0.93314 0.77786 0.89742 0.90076 0.91376 0.91082 0.81095 0.83484 0.86946 0.90649 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.73 9.98 -15.06 -0.15 -6.88 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -16.94 5.28 -51.35 -0.27 -17.21 16 10 C 0.17 3.25 3.69 -65.78 -0.24 3.01 16 11 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 12 C -0.13 -1.90 6.57 -24.89 -0.16 -2.06 16 13 C 0.09 1.13 5.18 -3.06 -0.02 1.11 16 14 N -0.61 -9.93 3.33 -172.08 -0.57 -10.51 16 15 C 0.59 10.17 7.72 -12.90 -0.10 10.07 16 16 O -0.51 -10.61 13.35 5.19 0.07 -10.54 16 17 C -0.21 -2.88 6.35 -36.79 -0.23 -3.11 16 18 S 0.26 2.34 18.48 -107.50 -1.99 0.35 16 19 C -0.26 -1.95 10.92 29.18 0.32 -1.64 16 20 C -0.12 -1.06 9.92 -41.41 -0.41 -1.47 16 21 C -0.13 -1.55 5.37 -105.47 -0.57 -2.12 16 22 C 0.34 4.29 4.98 36.01 0.18 4.47 16 23 F -0.19 -2.96 15.98 2.25 0.04 -2.93 16 24 F -0.19 -2.99 15.56 2.25 0.04 -2.95 16 25 C 0.08 1.61 6.60 -2.53 -0.02 1.59 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.39 9.69 7.71 -40.82 -0.31 9.38 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 30 H 0.07 0.73 6.79 -51.93 -0.35 0.38 16 31 H 0.07 0.76 7.05 -51.93 -0.37 0.40 16 32 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.11 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.08 1.57 8.04 -51.93 -0.42 1.15 16 36 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -33.52 321.00 -7.59 -41.11 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.94 Total: 4.64 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.50 Total: 2.68 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.12 Total: -54.30 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.07 Total: -5.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.99 Total: 0.35 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.52 -7.59 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019717566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.333 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds