Wall clock time and date at job start Tue Mar 31 2020 11:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 119.99980 * 2 1 4 4 H 1.48505 * 109.47095 * 269.99852 * 3 2 1 5 5 H 1.48499 * 109.47503 * 30.00134 * 3 2 1 6 6 H 1.48504 * 109.47315 * 150.00180 * 3 2 1 7 7 C 1.38823 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00044 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.91306 * 37.45099 * 10 9 7 12 12 C 1.55154 * 111.00436 * 161.35123 * 10 9 7 13 13 C 1.54337 * 103.01905 * 153.38451 * 12 10 9 14 14 N 1.47024 * 107.26552 * 338.14144 * 13 12 10 15 15 C 1.34769 * 125.64856 * 178.85571 * 14 13 12 16 16 O 1.21699 * 120.00238 * 179.68941 * 15 14 13 17 17 C 1.46588 * 119.99949 * 359.68097 * 15 14 13 18 18 S 1.75827 * 125.45796 * 5.96164 * 17 15 14 19 19 C 1.70615 * 91.56476 * 179.83959 * 18 17 15 20 20 C 1.33817 * 110.95260 * 0.31230 * 19 18 17 21 21 C 1.36650 * 125.45846 * 185.97877 * 17 15 14 22 22 C 1.50707 * 123.35128 * 359.94286 * 21 17 15 23 23 F 1.39899 * 109.47215 * 295.85727 * 22 21 17 24 24 F 1.39900 * 109.46491 * 55.85327 * 22 21 17 25 25 C 1.47424 * 108.70132 * 358.58462 * 14 13 12 26 26 H 0.96996 * 120.00257 * 0.02562 * 1 2 3 27 27 H 0.97007 * 120.00392 * 359.97438 * 9 7 2 28 28 H 1.09004 * 110.71582 * 271.94028 * 12 10 9 29 29 H 1.08997 * 110.72239 * 35.21643 * 12 10 9 30 30 H 1.08994 * 109.98933 * 218.66479 * 13 12 10 31 31 H 1.09002 * 109.77823 * 97.49499 * 13 12 10 32 32 H 1.07995 * 124.52802 * 180.17586 * 19 18 17 33 33 H 1.07999 * 122.45039 * 179.89289 * 20 19 18 34 34 H 1.09000 * 109.47070 * 175.84774 * 22 21 17 35 35 H 1.09003 * 110.36705 * 143.19901 * 25 14 13 36 36 H 1.09008 * 110.36673 * 265.40880 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0017 11 1 2.9531 -3.5900 0.6168 12 6 1.1479 -4.8249 0.4617 13 6 1.7796 -6.0526 -0.2280 14 7 2.5582 -5.5575 -1.3726 15 6 3.2809 -6.3178 -2.2188 16 8 3.8841 -5.7986 -3.1394 17 6 3.3405 -7.7703 -2.0300 18 16 2.4142 -8.6841 -0.8475 19 6 3.1112 -10.1523 -1.3667 20 6 3.9844 -9.9429 -2.3589 21 6 4.1253 -8.6310 -2.7447 22 6 5.0521 -8.1863 -3.8468 23 9 4.3026 -7.6429 -4.8956 24 9 5.9331 -7.2183 -3.3528 25 6 2.4121 -4.0923 -1.4455 26 1 -0.4850 0.8400 -0.0004 27 1 0.3555 -2.3881 0.0002 28 1 1.1784 -4.9306 1.5461 29 1 0.1248 -4.6770 0.1161 30 1 0.9979 -6.7279 -0.5756 31 1 2.4364 -6.5708 0.4708 32 1 2.8805 -11.1210 -0.9488 33 1 4.5348 -10.7464 -2.8257 34 1 5.6201 -9.0423 -4.2113 35 1 3.3488 -3.6329 -1.7614 36 1 1.6087 -3.8249 -2.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019717566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:53 Heat of formation + Delta-G solvation = -100.309691 kcal Electronic energy + Delta-G solvation = -24139.411003 eV Core-core repulsion = 20192.717342 eV Total energy + Delta-G solvation = -3946.693660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.79433 -47.83444 -41.18297 -39.32511 -38.26422 -36.00985 -33.49089 -31.54004 -31.17435 -29.61885 -28.26310 -25.97630 -24.62179 -23.83901 -22.17447 -21.47426 -20.16351 -19.55641 -19.02353 -18.12875 -18.08635 -17.62546 -17.33155 -16.85338 -16.39407 -16.08959 -15.59247 -15.29184 -15.28526 -14.83977 -14.71180 -14.42243 -14.19872 -14.07994 -13.89816 -13.67833 -13.55935 -13.33638 -13.24383 -12.93111 -12.81868 -12.39105 -12.21403 -12.12672 -11.82009 -11.75677 -11.52636 -11.22759 -11.02272 -10.14429 -9.76090 -9.59718 -9.10974 -7.99445 -5.29468 -0.70326 0.30639 0.87801 1.21818 1.46404 1.48466 1.56001 1.77254 1.96973 2.53711 2.91869 3.27039 3.33417 3.40644 3.53998 3.75046 3.90041 4.05397 4.11533 4.14461 4.21759 4.26490 4.36250 4.47368 4.53743 4.77039 4.81989 4.91072 5.03257 5.13004 5.13801 5.17718 5.30911 5.50186 6.22470 6.35580 6.93807 7.30320 8.00200 8.25319 9.23104 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.003459 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.999547 B = 8093.137148 C = 9083.688999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.721 5.721 10 C 0.167 3.833 11 H 0.064 0.936 12 C -0.121 4.121 13 C 0.091 3.909 14 N -0.610 5.610 15 C 0.578 3.422 16 O -0.562 6.562 17 C -0.272 4.272 18 S 0.302 5.698 19 C -0.234 4.234 20 C -0.131 4.131 21 C -0.127 4.127 22 C 0.321 3.679 23 F -0.214 7.214 24 F -0.214 7.214 25 C 0.095 3.905 26 H 0.253 0.747 27 H 0.380 0.620 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.212 0.788 33 H 0.184 0.816 34 H 0.169 0.831 35 H 0.044 0.956 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -28.413 0.428 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.360 5.360 10 C 0.056 3.944 11 H 0.082 0.918 12 C -0.159 4.159 13 C -0.032 4.032 14 N -0.344 5.344 15 C 0.368 3.632 16 O -0.442 6.442 17 C -0.393 4.393 18 S 0.573 5.427 19 C -0.371 4.371 20 C -0.160 4.160 21 C -0.145 4.145 22 C 0.266 3.734 23 F -0.195 7.195 24 F -0.196 7.196 25 C -0.031 4.031 26 H 0.062 0.938 27 H 0.213 0.787 28 H 0.129 0.871 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.229 0.771 33 H 0.201 0.799 34 H 0.185 0.815 35 H 0.063 0.937 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.679 -27.661 1.071 28.074 hybrid contribution 1.078 1.282 -1.613 2.325 sum 5.757 -26.379 -0.542 27.005 Atomic orbital electron populations 1.69781 1.06405 1.26279 1.58799 1.25493 0.96348 1.00864 1.03111 0.85222 0.77920 0.79813 0.77289 1.21881 1.21729 1.19448 1.19578 0.91397 0.85210 1.41992 0.90946 1.42395 1.05565 1.00291 1.87780 1.21455 0.95422 0.85898 0.91611 0.91779 1.22814 0.99290 0.91574 1.02249 1.22392 0.95689 0.97667 0.87430 1.48388 1.48223 1.08228 1.29515 1.17182 0.78889 0.85634 0.81523 1.90868 1.46276 1.74339 1.32756 1.24569 1.09877 0.96397 1.08453 1.83194 1.36889 0.93631 1.29021 1.26103 1.02223 1.06471 1.02344 1.19881 1.02008 0.94448 0.99617 1.20337 0.99815 0.95143 0.99255 1.20636 0.83635 0.87597 0.81540 1.92982 1.78659 1.88596 1.59262 1.92985 1.69764 1.68188 1.88613 1.23044 0.99904 0.78482 1.01634 0.93787 0.78687 0.87078 0.90084 0.88797 0.88375 0.77074 0.79866 0.81464 0.93718 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.82 13.06 21.65 0.28 -57.53 16 2 C -0.07 -3.71 5.50 84.87 0.47 -3.24 16 3 Si 0.97 46.32 29.55 68.60 2.03 48.34 16 4 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -13.80 9.98 84.04 0.84 -12.96 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.72 -35.23 5.28 -316.37 -1.67 -36.89 16 10 C 0.17 6.39 3.69 46.38 0.17 6.56 16 11 H 0.06 2.48 8.13 -2.38 -0.02 2.46 16 12 C -0.12 -3.24 6.57 31.79 0.21 -3.03 16 13 C 0.09 2.11 5.18 86.73 0.45 2.56 16 14 N -0.61 -20.26 3.33 -816.57 -2.72 -22.98 16 15 C 0.58 20.68 7.72 86.42 0.67 21.35 16 16 O -0.56 -25.06 13.35 -4.35 -0.06 -25.11 16 17 C -0.27 -7.05 6.35 24.08 0.15 -6.90 16 18 S 0.30 4.32 18.48 -56.49 -1.04 3.28 16 19 C -0.23 -2.22 10.92 66.81 0.73 -1.49 16 20 C -0.13 -1.63 9.92 21.08 0.21 -1.42 16 21 C -0.13 -2.81 5.37 -20.42 -0.11 -2.92 16 22 C 0.32 7.87 4.98 71.24 0.35 8.23 16 23 F -0.21 -6.90 15.98 44.97 0.72 -6.18 16 24 F -0.21 -7.02 15.56 44.97 0.70 -6.32 16 25 C 0.10 3.83 6.60 86.85 0.57 4.40 16 26 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.38 19.50 7.71 -92.70 -0.71 18.79 16 28 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.08 2.21 8.00 -2.39 -0.02 2.19 16 30 H 0.09 1.73 6.79 -2.39 -0.02 1.71 16 31 H 0.10 1.77 7.05 -2.39 -0.02 1.76 16 32 H 0.21 0.36 8.06 -2.91 -0.02 0.34 16 33 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.17 2.08 8.06 -2.39 -0.02 2.06 16 35 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 36 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -78.96 321.00 3.37 -75.59 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.42 Total: 16.69 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.71 Total: 11.12 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -4.10 Total: -117.41 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 9 Polarization: -13.92 SS G_CDS: 1.42 Total: -12.50 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.04 Total: 3.28 kcal Total: -78.96 3.37 -75.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019717566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.722 kcal (2) G-P(sol) polarization free energy of solvation -78.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds