Wall clock time and date at job start Tue Mar 31 2020 11:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00261 * 2 1 4 4 H 1.48502 * 109.47162 * 239.99970 * 3 2 1 5 5 H 1.48500 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46856 * 120.00059 * 3 2 1 7 7 C 1.38813 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00594 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.84791 * 334.66372 * 10 9 7 12 12 C 1.53781 * 113.69223 * 105.93244 * 10 9 7 13 13 C 1.53783 * 87.07998 * 89.13063 * 12 10 9 14 14 H 1.08999 * 113.61363 * 270.88761 * 13 12 10 15 15 N 1.46500 * 113.69007 * 139.98828 * 13 12 10 16 16 C 1.34774 * 119.99278 * 107.46391 * 15 13 12 17 17 O 1.21631 * 120.00718 * 0.02562 * 16 15 13 18 18 C 1.47196 * 119.99512 * 179.97438 * 16 15 13 19 19 C 1.44422 * 123.46359 * 354.13508 * 18 16 15 20 20 C 1.32767 * 113.08787 * 179.80831 * 19 18 16 21 21 S 1.75506 * 110.57261 * 0.44014 * 20 19 18 22 22 C 1.36010 * 123.46062 * 174.42735 * 18 16 15 23 23 C 1.50701 * 124.59264 * 0.02562 * 22 18 16 24 24 F 1.39904 * 109.47188 * 303.92336 * 23 22 18 25 25 F 1.39905 * 109.47053 * 63.92062 * 23 22 18 26 26 C 1.53783 * 113.61558 * 203.47384 * 10 9 7 27 27 H 0.97003 * 119.99593 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99858 * 359.97438 * 9 7 2 29 29 H 1.08999 * 113.61310 * 203.67900 * 12 10 9 30 30 H 1.08992 * 113.61229 * 334.58214 * 12 10 9 31 31 H 0.96995 * 120.00252 * 287.46581 * 15 13 12 32 32 H 1.08001 * 123.45243 * 359.97438 * 19 18 16 33 33 H 1.07995 * 124.71593 * 180.18187 * 20 19 18 34 34 H 1.08995 * 109.47355 * 183.92476 * 23 22 18 35 35 H 1.08997 * 113.61661 * 25.34371 * 26 10 9 36 36 H 1.09000 * 113.60969 * 156.16455 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 3.0557 -3.5696 -0.4293 12 6 2.0319 -4.3853 1.3546 13 6 0.7414 -5.0692 0.8731 14 1 -0.1639 -4.5115 1.1130 15 7 0.6525 -6.4843 1.2415 16 6 -0.2038 -6.8771 2.2053 17 8 -0.9031 -6.0568 2.7689 18 6 -0.2937 -8.2990 2.5751 19 6 0.4070 -9.3498 1.8746 20 6 0.1818 -10.5550 2.3839 21 16 -0.9181 -10.4525 3.7478 22 6 -1.0496 -8.7589 3.6080 23 6 -1.8905 -7.8890 4.5065 24 9 -1.0861 -6.9016 5.0855 25 9 -2.9034 -7.2838 3.7548 26 6 1.2464 -4.8365 -0.5607 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3880 0.0005 29 1 2.8647 -5.0742 1.4958 30 1 1.8825 -3.7204 2.2052 31 1 1.2098 -7.1385 0.7919 32 1 1.0504 -9.1729 1.0254 33 1 0.6120 -11.4716 2.0084 34 1 -2.3362 -8.5006 5.2909 35 1 0.4629 -4.5359 -1.2562 36 1 1.8645 -5.6482 -0.9445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020988093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:13 Heat of formation + Delta-G solvation = -64.883160 kcal Electronic energy + Delta-G solvation = -23765.077749 eV Core-core repulsion = 19819.920299 eV Total energy + Delta-G solvation = -3945.157451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.84003 -46.84871 -40.05243 -38.34185 -36.92853 -34.03430 -32.60628 -31.36219 -29.73666 -27.19065 -25.08709 -24.65455 -23.63155 -22.55797 -21.63235 -19.74843 -18.78124 -18.64862 -17.33542 -17.22872 -17.13634 -16.44941 -16.01267 -15.41501 -14.94646 -14.85384 -14.78799 -13.97129 -13.80433 -13.64445 -13.21458 -13.15131 -13.03827 -12.99757 -12.63507 -12.47968 -12.04142 -11.94845 -11.66663 -11.51056 -11.34825 -10.83851 -10.77342 -10.24633 -10.14408 -9.94319 -9.69924 -9.60783 -9.57601 -8.93583 -8.87655 -8.62582 -6.97593 -5.75813 -3.06014 0.20040 0.91918 1.34466 1.62366 3.28594 3.33054 3.45953 3.50063 3.51556 3.54875 3.92830 4.39425 4.51473 4.58947 4.84483 4.92246 4.96215 5.09078 5.27398 5.40204 5.41905 5.46044 5.51063 5.72485 5.90103 6.02844 6.10658 6.24003 6.39255 6.64672 6.74927 6.82022 7.06660 7.65358 7.71820 8.34902 8.42299 9.52870 10.09313 10.43329 11.46301 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.024337 B = 0.002931 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.247110 B = 9550.065216 C =10288.717458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.184 4.184 13 C 0.127 3.873 14 H 0.115 0.885 15 N -0.708 5.708 16 C 0.561 3.439 17 O -0.510 6.510 18 C -0.104 4.104 19 C -0.113 4.113 20 C -0.215 4.215 21 S 0.220 5.780 22 C -0.261 4.261 23 C 0.357 3.643 24 F -0.180 7.180 25 F -0.181 7.181 26 C -0.163 4.163 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.156 0.844 33 H 0.176 0.824 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 -27.586 6.099 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.086 0.914 12 C -0.226 4.226 13 C 0.023 3.977 14 H 0.133 0.867 15 N -0.358 5.358 16 C 0.344 3.656 17 O -0.386 6.386 18 C -0.123 4.123 19 C -0.143 4.143 20 C -0.350 4.350 21 S 0.487 5.513 22 C -0.382 4.382 23 C 0.301 3.699 24 F -0.161 7.161 25 F -0.162 7.162 26 C -0.203 4.203 27 H 0.067 0.933 28 H 0.221 0.779 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.173 0.827 33 H 0.194 0.806 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.431 -27.822 7.462 28.841 hybrid contribution 1.105 1.621 -1.229 2.315 sum -0.326 -26.201 6.233 26.934 Atomic orbital electron populations 1.69659 1.05149 1.25970 1.56945 1.24784 0.95530 0.97824 1.02584 0.86238 0.78508 0.83389 0.77846 1.21213 1.21665 1.21177 1.19217 0.91062 0.83912 1.43550 0.90994 1.42190 1.05780 0.99381 1.87050 1.20902 0.95138 0.85432 0.92651 0.91446 1.24320 0.96029 0.99716 1.02538 1.22686 1.00011 0.79251 0.95721 0.86679 1.45940 1.41242 1.10256 1.38412 1.17591 0.80888 0.86458 0.80641 1.90913 1.42521 1.53190 1.51948 1.20503 0.99616 0.95507 0.96715 1.21288 1.01003 0.90715 1.01248 1.25588 1.05304 1.02396 1.01750 1.82877 1.42239 0.96729 1.29464 1.25218 1.07089 1.01655 1.04225 1.19361 0.79688 0.83200 0.87656 1.93084 1.74351 1.64440 1.84226 1.93076 1.59718 1.85038 1.78386 1.23886 1.00858 0.99926 0.95653 0.93307 0.77939 0.91321 0.90949 0.77160 0.82684 0.80647 0.87030 0.90803 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.92 9.97 -15.06 -0.15 -7.07 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.71 -17.98 5.31 -52.63 -0.28 -18.26 16 10 C 0.17 3.41 4.55 -67.12 -0.31 3.10 16 11 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 12 C -0.18 -3.33 7.68 -25.92 -0.20 -3.53 16 13 C 0.13 2.18 4.13 -67.11 -0.28 1.90 16 14 H 0.12 2.40 7.46 -51.93 -0.39 2.01 16 15 N -0.71 -9.89 5.34 -54.16 -0.29 -10.18 16 16 C 0.56 8.94 7.70 -12.62 -0.10 8.85 16 17 O -0.51 -10.39 12.43 5.25 0.07 -10.32 16 18 C -0.10 -1.28 5.97 -104.63 -0.62 -1.90 16 19 C -0.11 -0.93 9.90 -39.02 -0.39 -1.31 16 20 C -0.21 -1.34 11.12 28.86 0.32 -1.01 16 21 S 0.22 1.49 22.95 -107.50 -2.47 -0.98 16 22 C -0.26 -2.93 5.79 -35.11 -0.20 -3.13 16 23 C 0.36 4.42 5.03 36.01 0.18 4.60 16 24 F -0.18 -2.86 15.52 2.25 0.03 -2.82 16 25 F -0.18 -2.82 15.90 2.25 0.04 -2.79 16 26 C -0.16 -2.61 7.57 -25.91 -0.20 -2.81 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.39 10.55 7.90 -40.82 -0.32 10.23 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.39 4.03 7.31 -40.82 -0.30 3.73 16 32 H 0.16 0.88 7.13 -52.49 -0.37 0.51 16 33 H 0.18 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.11 0.85 8.12 -51.93 -0.42 0.42 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -35.38 329.07 -8.16 -43.54 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -3.88 Total: 9.87 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.03 Total: -2.73 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.16 Total: -56.36 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.07 Total: -5.61 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.47 Total: -0.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.38 -8.16 -43.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020988093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.347 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds