Wall clock time and date at job start Tue Mar 31 2020 11:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00261 * 2 1 4 4 H 1.48502 * 109.47162 * 239.99970 * 3 2 1 5 5 H 1.48500 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46856 * 120.00059 * 3 2 1 7 7 C 1.38813 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00594 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.84791 * 334.66372 * 10 9 7 12 12 C 1.53781 * 113.69223 * 105.93244 * 10 9 7 13 13 C 1.53783 * 87.07998 * 89.13063 * 12 10 9 14 14 H 1.08999 * 113.61363 * 270.88761 * 13 12 10 15 15 N 1.46500 * 113.69007 * 139.98828 * 13 12 10 16 16 C 1.34774 * 119.99278 * 107.46391 * 15 13 12 17 17 O 1.21631 * 120.00718 * 0.02562 * 16 15 13 18 18 C 1.47196 * 119.99512 * 179.97438 * 16 15 13 19 19 C 1.44422 * 123.46359 * 354.13508 * 18 16 15 20 20 C 1.32767 * 113.08787 * 179.80831 * 19 18 16 21 21 S 1.75506 * 110.57261 * 0.44014 * 20 19 18 22 22 C 1.36010 * 123.46062 * 174.42735 * 18 16 15 23 23 C 1.50701 * 124.59264 * 0.02562 * 22 18 16 24 24 F 1.39904 * 109.47188 * 303.92336 * 23 22 18 25 25 F 1.39905 * 109.47053 * 63.92062 * 23 22 18 26 26 C 1.53783 * 113.61558 * 203.47384 * 10 9 7 27 27 H 0.97003 * 119.99593 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99858 * 359.97438 * 9 7 2 29 29 H 1.08999 * 113.61310 * 203.67900 * 12 10 9 30 30 H 1.08992 * 113.61229 * 334.58214 * 12 10 9 31 31 H 0.96995 * 120.00252 * 287.46581 * 15 13 12 32 32 H 1.08001 * 123.45243 * 359.97438 * 19 18 16 33 33 H 1.07995 * 124.71593 * 180.18187 * 20 19 18 34 34 H 1.08995 * 109.47355 * 183.92476 * 23 22 18 35 35 H 1.08997 * 113.61661 * 25.34371 * 26 10 9 36 36 H 1.09000 * 113.60969 * 156.16455 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 3.0557 -3.5696 -0.4293 12 6 2.0319 -4.3853 1.3546 13 6 0.7414 -5.0692 0.8731 14 1 -0.1639 -4.5115 1.1130 15 7 0.6525 -6.4843 1.2415 16 6 -0.2038 -6.8771 2.2053 17 8 -0.9031 -6.0568 2.7689 18 6 -0.2937 -8.2990 2.5751 19 6 0.4070 -9.3498 1.8746 20 6 0.1818 -10.5550 2.3839 21 16 -0.9181 -10.4525 3.7478 22 6 -1.0496 -8.7589 3.6080 23 6 -1.8905 -7.8890 4.5065 24 9 -1.0861 -6.9016 5.0855 25 9 -2.9034 -7.2838 3.7548 26 6 1.2464 -4.8365 -0.5607 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3880 0.0005 29 1 2.8647 -5.0742 1.4958 30 1 1.8825 -3.7204 2.2052 31 1 1.2098 -7.1385 0.7919 32 1 1.0504 -9.1729 1.0254 33 1 0.6120 -11.4716 2.0084 34 1 -2.3362 -8.5006 5.2909 35 1 0.4629 -4.5359 -1.2562 36 1 1.8645 -5.6482 -0.9445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020988093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:12 Heat of formation + Delta-G solvation = -90.523809 kcal Electronic energy + Delta-G solvation = -23766.189611 eV Core-core repulsion = 19819.920299 eV Total energy + Delta-G solvation = -3946.269313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.89120 -47.94079 -41.26494 -39.65847 -37.86735 -35.76390 -34.27127 -32.08074 -31.71329 -28.16851 -26.54723 -26.23415 -25.08531 -23.74368 -22.63833 -20.85362 -20.11178 -19.51703 -19.33545 -18.28878 -18.19289 -17.54667 -17.10442 -16.70429 -16.36969 -16.14961 -15.80566 -15.63552 -15.09104 -14.79662 -14.66045 -14.41812 -14.29305 -13.94325 -13.75404 -13.56513 -13.35696 -13.30056 -13.28395 -12.76824 -12.63207 -12.29580 -12.22844 -12.09176 -11.83520 -11.72916 -11.36236 -11.00140 -10.85599 -10.21891 -10.02408 -9.44708 -9.04500 -7.96365 -5.26666 -0.55742 0.30089 0.77475 0.93694 1.45905 1.50187 1.56118 2.18625 2.23542 2.54736 2.75940 3.12930 3.35150 3.61053 3.66251 3.68455 3.82121 3.88206 3.94281 4.16040 4.28279 4.28872 4.37377 4.71300 4.79744 4.83073 4.95027 4.99068 5.12204 5.15274 5.22837 5.29571 5.49232 5.66404 6.25629 6.55097 7.23418 7.29958 8.06281 8.27652 9.27109 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.024337 B = 0.002931 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.247110 B = 9550.065216 C =10288.717458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.152 3.848 11 H 0.081 0.919 12 C -0.171 4.171 13 C 0.132 3.868 14 H 0.066 0.934 15 N -0.691 5.691 16 C 0.551 3.449 17 O -0.569 6.569 18 C -0.134 4.134 19 C -0.123 4.123 20 C -0.201 4.201 21 S 0.297 5.703 22 C -0.292 4.292 23 C 0.337 3.663 24 F -0.208 7.208 25 F -0.207 7.207 26 C -0.135 4.135 27 H 0.251 0.749 28 H 0.371 0.629 29 H 0.106 0.894 30 H 0.030 0.970 31 H 0.417 0.583 32 H 0.180 0.820 33 H 0.217 0.783 34 H 0.161 0.839 35 H 0.061 0.939 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -31.522 5.490 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.101 0.899 9 N -0.362 5.362 10 C 0.041 3.959 11 H 0.099 0.901 12 C -0.213 4.213 13 C 0.026 3.974 14 H 0.085 0.915 15 N -0.343 5.343 16 C 0.337 3.663 17 O -0.449 6.449 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.336 4.336 21 S 0.565 5.435 22 C -0.413 4.413 23 C 0.282 3.718 24 F -0.189 7.189 25 F -0.189 7.189 26 C -0.174 4.174 27 H 0.060 0.940 28 H 0.202 0.798 29 H 0.125 0.875 30 H 0.049 0.951 31 H 0.255 0.745 32 H 0.197 0.803 33 H 0.233 0.767 34 H 0.178 0.822 35 H 0.080 0.920 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.883 -31.854 6.832 32.590 hybrid contribution 0.413 2.631 -0.961 2.831 sum 1.296 -29.223 5.871 29.835 Atomic orbital electron populations 1.69845 1.06895 1.26220 1.59354 1.25676 0.96382 1.01513 1.03588 0.85143 0.77107 0.78748 0.78349 1.19718 1.22422 1.20476 1.19695 0.91724 0.85015 1.41298 0.89896 1.42410 1.05308 1.00974 1.87496 1.21245 0.95843 0.84561 0.94255 0.90092 1.24191 0.97808 0.99500 0.99780 1.22213 0.97591 0.80761 0.96794 0.91547 1.45652 1.41286 1.09183 1.38133 1.18306 0.79940 0.88076 0.79931 1.90883 1.44798 1.55272 1.53967 1.20440 1.02301 0.93993 0.98717 1.21404 1.01532 0.90017 1.02111 1.26132 1.03795 1.03139 1.00573 1.82632 1.40546 0.91913 1.28440 1.25443 1.07134 1.04565 1.04135 1.20160 0.79542 0.82948 0.89109 1.93013 1.75204 1.65981 1.84725 1.93008 1.60888 1.85717 1.79259 1.23726 1.00156 0.99234 0.94278 0.94046 0.79773 0.87528 0.95067 0.74463 0.80256 0.76653 0.82218 0.92011 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.49 13.06 21.65 0.28 -62.20 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 3 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.25 -14.04 9.97 84.03 0.84 -13.20 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.72 -38.11 5.31 -320.44 -1.70 -39.81 16 10 C 0.15 5.94 4.55 45.52 0.21 6.15 16 11 H 0.08 2.96 8.11 -2.38 -0.02 2.94 16 12 C -0.17 -6.19 7.68 31.12 0.24 -5.95 16 13 C 0.13 4.60 4.13 45.52 0.19 4.79 16 14 H 0.07 3.02 7.46 -2.39 -0.02 3.00 16 15 N -0.69 -18.83 5.34 -443.51 -2.37 -21.19 16 16 C 0.55 18.06 7.70 86.60 0.67 18.73 16 17 O -0.57 -24.98 12.43 -4.13 -0.05 -25.03 16 18 C -0.13 -3.14 5.97 -19.87 -0.12 -3.26 16 19 C -0.12 -1.57 9.90 22.67 0.22 -1.35 16 20 C -0.20 -1.50 11.12 66.64 0.74 -0.76 16 21 S 0.30 2.90 22.95 -56.49 -1.30 1.60 16 22 C -0.29 -6.23 5.79 25.17 0.15 -6.08 16 23 C 0.34 8.53 5.03 71.24 0.36 8.89 16 24 F -0.21 -7.02 15.52 44.97 0.70 -6.32 16 25 F -0.21 -6.88 15.90 44.97 0.71 -6.16 16 26 C -0.13 -4.10 7.57 31.12 0.24 -3.87 16 27 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.37 21.45 7.90 -92.71 -0.73 20.71 16 29 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.42 7.30 7.31 -92.71 -0.68 6.62 16 32 H 0.18 1.22 7.13 -2.91 -0.02 1.20 16 33 H 0.22 -0.12 8.06 -2.91 -0.02 -0.14 16 34 H 0.16 2.25 8.12 -2.39 -0.02 2.23 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.13 2.66 8.12 -2.39 -0.02 2.64 16 Total: -1.00 -85.14 329.07 2.24 -82.90 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.26 Total: 26.89 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 4.19 Total: -0.19 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -3.79 Total: -123.21 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 9 Polarization: -13.90 SS G_CDS: 1.41 Total: -12.49 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.30 Total: 1.60 kcal Total: -85.14 2.24 -82.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020988093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.619 kcal (2) G-P(sol) polarization free energy of solvation -85.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds