Wall clock time and date at job start Tue Mar 31 2020 11:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99689 * 2 1 4 4 H 1.48499 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47043 * 300.00056 * 3 2 1 6 6 H 1.48497 * 109.47038 * 60.00424 * 3 2 1 7 7 C 1.38815 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49261 * 0.02562 * 9 7 2 11 11 C 1.53948 * 86.11709 * 155.35947 * 10 9 7 12 12 C 1.47578 * 134.49317 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.86915 * 90.32937 * 12 9 7 14 14 C 1.52998 * 113.76964 * 318.94458 * 12 9 7 15 15 N 1.46502 * 109.47070 * 78.50698 * 14 12 9 16 16 C 1.34774 * 119.99873 * 180.02562 * 15 14 12 17 17 O 1.21698 * 120.00485 * 359.97438 * 16 15 14 18 18 C 1.46588 * 119.99855 * 179.97438 * 16 15 14 19 19 S 1.75827 * 125.45766 * 354.43273 * 18 16 15 20 20 C 1.70616 * 91.56411 * 180.18144 * 19 18 16 21 21 C 1.33816 * 110.95544 * 359.83458 * 20 19 18 22 22 C 1.36649 * 125.45976 * 174.31256 * 18 16 15 23 23 C 1.50702 * 123.34958 * 0.03271 * 22 18 16 24 24 F 1.39903 * 109.47071 * 113.94248 * 23 22 18 25 25 F 1.39897 * 109.47368 * 233.94541 * 23 22 18 26 26 H 0.96991 * 120.00514 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.77061 * 41.06061 * 10 9 7 28 28 H 1.08996 * 113.87219 * 269.66814 * 10 9 7 29 29 H 1.09002 * 113.73949 * 269.26207 * 11 10 9 30 30 H 1.09002 * 113.84103 * 137.96439 * 11 10 9 31 31 H 1.08994 * 109.47226 * 318.49967 * 14 12 9 32 32 H 1.09002 * 109.47423 * 198.50126 * 14 12 9 33 33 H 0.97001 * 120.00189 * 359.97438 * 15 14 12 34 34 H 1.08004 * 124.52546 * 179.81486 * 20 19 18 35 35 H 1.08002 * 122.45490 * 179.97438 * 21 20 19 36 36 H 1.09005 * 109.47062 * 353.94566 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1031 -2.7574 -0.0005 11 6 0.3472 -4.0830 -0.6409 12 6 1.7203 -3.8101 -0.0015 13 1 1.8335 -4.2370 0.9950 14 6 2.9019 -4.1215 -0.9222 15 7 4.1496 -3.7186 -0.2687 16 6 5.3281 -3.8983 -0.8973 17 8 5.3559 -4.3957 -2.0077 18 6 6.5766 -3.4947 -0.2437 19 16 6.6958 -2.6414 1.2890 20 6 8.3996 -2.6269 1.2019 21 6 8.8270 -3.2324 0.0877 22 6 7.8342 -3.7232 -0.7267 23 6 8.1056 -4.4368 -2.0261 24 9 8.6825 -3.5447 -2.9363 25 9 8.9825 -5.5028 -1.7984 26 1 -0.4850 0.8399 0.0004 27 1 -0.7168 -2.1391 -0.6558 28 1 -0.5287 -2.8734 0.9962 29 1 0.3593 -4.0620 -1.7307 30 1 -0.1581 -4.9608 -0.2383 31 1 2.7881 -3.5735 -1.8574 32 1 2.9292 -5.1914 -1.1290 33 1 4.1275 -3.3218 0.6162 34 1 9.0470 -2.1874 1.9464 35 1 9.8752 -3.3281 -0.1543 36 1 7.1692 -4.8173 -2.4341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038976159.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:04 Heat of formation + Delta-G solvation = -46.887759 kcal Electronic energy + Delta-G solvation = -23984.673216 eV Core-core repulsion = 20040.296105 eV Total energy + Delta-G solvation = -3944.377112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.92074 -46.90841 -39.91056 -38.28581 -37.61180 -34.38304 -32.26817 -30.83661 -28.65975 -27.94747 -26.58551 -23.87660 -23.44019 -22.54276 -21.20187 -19.65509 -19.16799 -18.68799 -17.40609 -17.18234 -16.73321 -16.44867 -15.76725 -15.48181 -15.40390 -14.80449 -14.57053 -14.12281 -13.89855 -13.78865 -13.46454 -13.31097 -13.27865 -13.04675 -12.87915 -12.33670 -12.00409 -11.52519 -11.49482 -11.21178 -11.14396 -11.09115 -10.80359 -10.58256 -10.09253 -9.86034 -9.80183 -9.50561 -9.27399 -8.93299 -8.87003 -8.77633 -6.97050 -5.83367 -3.16457 0.16072 1.13915 1.57804 2.00445 3.04256 3.18223 3.33210 3.38745 3.41385 3.78074 4.32733 4.35970 4.60562 4.71902 4.95111 5.04223 5.10230 5.11362 5.30727 5.52680 5.55902 5.60159 5.81599 5.84390 5.88069 5.96882 6.21479 6.31806 6.49861 6.56126 6.68912 7.17650 7.33064 7.51652 7.53544 7.91248 8.13791 8.96865 9.64110 10.51491 11.33160 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.004270 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.822893 B = 6555.371256 C = 7467.742033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.124 3.876 13 H 0.051 0.949 14 C 0.121 3.879 15 N -0.700 5.700 16 C 0.585 3.415 17 O -0.536 6.536 18 C -0.229 4.229 19 S 0.259 5.741 20 C -0.239 4.239 21 C -0.124 4.124 22 C -0.113 4.113 23 C 0.309 3.691 24 F -0.199 7.199 25 F -0.204 7.204 26 H 0.253 0.747 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.175 0.825 35 H 0.148 0.852 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.941 -8.997 3.039 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.193 4.193 12 C 0.016 3.984 13 H 0.068 0.932 14 C -0.003 4.003 15 N -0.348 5.348 16 C 0.370 3.630 17 O -0.417 6.417 18 C -0.351 4.351 19 S 0.528 5.472 20 C -0.377 4.377 21 C -0.154 4.154 22 C -0.131 4.131 23 C 0.253 3.747 24 F -0.180 7.180 25 F -0.185 7.185 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.193 0.807 35 H 0.166 0.834 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.918 -8.413 3.343 14.967 hybrid contribution 1.889 0.862 -0.316 2.100 sum 13.807 -7.552 3.028 16.026 Atomic orbital electron populations 1.69815 1.04968 1.25247 1.56347 1.24746 0.95598 0.97395 1.02353 0.86169 0.78857 0.84113 0.77391 1.20416 1.21633 1.21688 1.18942 0.90074 0.81903 1.44076 0.90458 1.46081 1.02349 0.98457 1.85982 1.22200 0.87872 0.89590 0.96968 1.23764 0.95861 0.99065 1.00650 1.22520 0.92309 0.87898 0.95677 0.93184 1.21935 0.81511 0.99198 0.97636 1.45870 1.06001 1.61903 1.21048 1.16885 0.82233 0.78820 0.85058 1.90657 1.86094 1.45870 1.19072 1.24687 0.97107 1.10766 1.02570 1.83420 0.99992 1.49171 1.14628 1.25315 1.00975 1.07684 1.03751 1.19733 1.00921 1.00523 0.94214 1.19886 0.92098 1.02724 0.98363 1.20876 0.91098 0.77619 0.85064 1.92986 1.87046 1.69635 1.68365 1.92967 1.73116 1.57180 1.95234 0.93654 0.90757 0.95491 0.90411 0.92683 0.90290 0.91473 0.76272 0.80750 0.83399 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.17 11.38 55.49 0.63 -25.54 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 3 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.22 -5.75 10.51 -15.06 -0.16 -5.90 16 8 H 0.08 1.92 7.80 -52.49 -0.41 1.51 16 9 N -0.60 -14.00 3.57 -170.77 -0.61 -14.61 16 10 C 0.16 3.49 7.51 -2.97 -0.02 3.46 16 11 C -0.15 -2.65 7.86 -25.83 -0.20 -2.85 16 12 C 0.12 2.23 4.33 -66.89 -0.29 1.94 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.03 5.53 -4.04 -0.02 2.01 16 15 N -0.70 -11.20 5.52 -61.65 -0.34 -11.54 16 16 C 0.58 9.50 7.77 -12.89 -0.10 9.40 16 17 O -0.54 -9.74 14.01 5.19 0.07 -9.66 16 18 C -0.23 -3.24 6.45 -36.79 -0.24 -3.47 16 19 S 0.26 2.91 22.17 -107.50 -2.38 0.52 16 20 C -0.24 -2.35 10.92 29.18 0.32 -2.03 16 21 C -0.12 -1.41 9.90 -41.41 -0.41 -1.82 16 22 C -0.11 -1.55 5.37 -105.47 -0.57 -2.11 16 23 C 0.31 4.36 5.45 36.01 0.20 4.55 16 24 F -0.20 -3.00 17.32 2.25 0.04 -2.96 16 25 F -0.20 -2.82 17.26 2.25 0.04 -2.78 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 6.11 7.60 -40.82 -0.31 5.80 16 34 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.16 2.30 5.04 -51.93 -0.26 2.04 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -30.38 330.06 -8.06 -38.44 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.87 Total: 3.74 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.59 Total: 2.96 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.32 Total: -51.68 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.08 Total: -5.74 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.38 Total: 0.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.38 -8.06 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038976159.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.445 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds