Wall clock time and date at job start Tue Mar 31 2020 11:31:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86806 * 119.99689 * 2 1
4 4 H 1.48499 * 109.47196 * 180.02562 * 3 2 1
5 5 H 1.48497 * 109.47043 * 300.00056 * 3 2 1
6 6 H 1.48497 * 109.47038 * 60.00424 * 3 2 1
7 7 C 1.38815 * 120.00484 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99949 * 179.97438 * 7 2 1
9 9 N 1.36933 * 119.99742 * 359.97438 * 7 2 1
10 10 C 1.47580 * 134.49261 * 0.02562 * 9 7 2
11 11 C 1.53948 * 86.11709 * 155.35947 * 10 9 7
12 12 C 1.47578 * 134.49317 * 179.97438 * 9 7 2
13 13 H 1.08997 * 113.86915 * 90.32937 * 12 9 7
14 14 C 1.52998 * 113.76964 * 318.94458 * 12 9 7
15 15 N 1.46502 * 109.47070 * 78.50698 * 14 12 9
16 16 C 1.34774 * 119.99873 * 180.02562 * 15 14 12
17 17 O 1.21698 * 120.00485 * 359.97438 * 16 15 14
18 18 C 1.46588 * 119.99855 * 179.97438 * 16 15 14
19 19 S 1.75827 * 125.45766 * 354.43273 * 18 16 15
20 20 C 1.70616 * 91.56411 * 180.18144 * 19 18 16
21 21 C 1.33816 * 110.95544 * 359.83458 * 20 19 18
22 22 C 1.36649 * 125.45976 * 174.31256 * 18 16 15
23 23 C 1.50702 * 123.34958 * 0.03271 * 22 18 16
24 24 F 1.39903 * 109.47071 * 113.94248 * 23 22 18
25 25 F 1.39897 * 109.47368 * 233.94541 * 23 22 18
26 26 H 0.96991 * 120.00514 * 359.97438 * 1 2 3
27 27 H 1.09003 * 113.77061 * 41.06061 * 10 9 7
28 28 H 1.08996 * 113.87219 * 269.66814 * 10 9 7
29 29 H 1.09002 * 113.73949 * 269.26207 * 11 10 9
30 30 H 1.09002 * 113.84103 * 137.96439 * 11 10 9
31 31 H 1.08994 * 109.47226 * 318.49967 * 14 12 9
32 32 H 1.09002 * 109.47423 * 198.50126 * 14 12 9
33 33 H 0.97001 * 120.00189 * 359.97438 * 15 14 12
34 34 H 1.08004 * 124.52546 * 179.81486 * 20 19 18
35 35 H 1.08002 * 122.45490 * 179.97438 * 21 20 19
36 36 H 1.09005 * 109.47062 * 353.94566 * 23 22 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3466 -0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8914 2.3964 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2020 -0.0010
9 7 1.3257 -2.3880 -0.0005
10 6 -0.1031 -2.7574 -0.0005
11 6 0.3472 -4.0830 -0.6409
12 6 1.7203 -3.8101 -0.0015
13 1 1.8335 -4.2370 0.9950
14 6 2.9019 -4.1215 -0.9222
15 7 4.1496 -3.7186 -0.2687
16 6 5.3281 -3.8983 -0.8973
17 8 5.3559 -4.3957 -2.0077
18 6 6.5766 -3.4947 -0.2437
19 16 6.6958 -2.6414 1.2890
20 6 8.3996 -2.6269 1.2019
21 6 8.8270 -3.2324 0.0877
22 6 7.8342 -3.7232 -0.7267
23 6 8.1056 -4.4368 -2.0261
24 9 8.6825 -3.5447 -2.9363
25 9 8.9825 -5.5028 -1.7984
26 1 -0.4850 0.8399 0.0004
27 1 -0.7168 -2.1391 -0.6558
28 1 -0.5287 -2.8734 0.9962
29 1 0.3593 -4.0620 -1.7307
30 1 -0.1581 -4.9608 -0.2383
31 1 2.7881 -3.5735 -1.8574
32 1 2.9292 -5.1914 -1.1290
33 1 4.1275 -3.3218 0.6162
34 1 9.0470 -2.1874 1.9464
35 1 9.8752 -3.3281 -0.1543
36 1 7.1692 -4.8173 -2.4341
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001038976159.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:04
Heat of formation + Delta-G solvation = -46.887759 kcal
Electronic energy + Delta-G solvation = -23984.673216 eV
Core-core repulsion = 20040.296105 eV
Total energy + Delta-G solvation = -3944.377112 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.080 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-48.92074 -46.90841 -39.91056 -38.28581 -37.61180 -34.38304 -32.26817 -30.83661
-28.65975 -27.94747 -26.58551 -23.87660 -23.44019 -22.54276 -21.20187 -19.65509
-19.16799 -18.68799 -17.40609 -17.18234 -16.73321 -16.44867 -15.76725 -15.48181
-15.40390 -14.80449 -14.57053 -14.12281 -13.89855 -13.78865 -13.46454 -13.31097
-13.27865 -13.04675 -12.87915 -12.33670 -12.00409 -11.52519 -11.49482 -11.21178
-11.14396 -11.09115 -10.80359 -10.58256 -10.09253 -9.86034 -9.80183 -9.50561
-9.27399 -8.93299 -8.87003 -8.77633 -6.97050 -5.83367 -3.16457 0.16072
1.13915 1.57804 2.00445 3.04256 3.18223 3.33210 3.38745 3.41385
3.78074 4.32733 4.35970 4.60562 4.71902 4.95111 5.04223 5.10230
5.11362 5.30727 5.52680 5.55902 5.60159 5.81599 5.84390 5.88069
5.96882 6.21479 6.31806 6.49861 6.56126 6.68912 7.17650 7.33064
7.51652 7.53544 7.91248 8.13791 8.96865 9.64110 10.51491 11.33160
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.014673 B = 0.004270 C = 0.003749
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1907.822893 B = 6555.371256 C = 7467.742033
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C -0.004 4.004
3 Si 0.904 3.096
4 H -0.279 1.279
5 H -0.289 1.289
6 H -0.290 1.290
7 C -0.222 4.222
8 H 0.078 0.922
9 N -0.602 5.602
10 C 0.159 3.841
11 C -0.154 4.154
12 C 0.124 3.876
13 H 0.051 0.949
14 C 0.121 3.879
15 N -0.700 5.700
16 C 0.585 3.415
17 O -0.536 6.536
18 C -0.229 4.229
19 S 0.259 5.741
20 C -0.239 4.239
21 C -0.124 4.124
22 C -0.113 4.113
23 C 0.309 3.691
24 F -0.199 7.199
25 F -0.204 7.204
26 H 0.253 0.747
27 H 0.074 0.926
28 H 0.027 0.973
29 H 0.077 0.923
30 H 0.055 0.945
31 H 0.079 0.921
32 H 0.067 0.933
33 H 0.402 0.598
34 H 0.175 0.825
35 H 0.148 0.852
36 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.941 -8.997 3.039 16.051
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.201 4.201
3 Si 0.735 3.265
4 H -0.204 1.204
5 H -0.216 1.216
6 H -0.217 1.217
7 C -0.350 4.350
8 H 0.095 0.905
9 N -0.329 5.329
10 C 0.034 3.966
11 C -0.193 4.193
12 C 0.016 3.984
13 H 0.068 0.932
14 C -0.003 4.003
15 N -0.348 5.348
16 C 0.370 3.630
17 O -0.417 6.417
18 C -0.351 4.351
19 S 0.528 5.472
20 C -0.377 4.377
21 C -0.154 4.154
22 C -0.131 4.131
23 C 0.253 3.747
24 F -0.180 7.180
25 F -0.185 7.185
26 H 0.063 0.937
27 H 0.092 0.908
28 H 0.045 0.955
29 H 0.096 0.904
30 H 0.073 0.927
31 H 0.097 0.903
32 H 0.085 0.915
33 H 0.237 0.763
34 H 0.193 0.807
35 H 0.166 0.834
36 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges 11.918 -8.413 3.343 14.967
hybrid contribution 1.889 0.862 -0.316 2.100
sum 13.807 -7.552 3.028 16.026
Atomic orbital electron populations
1.69815 1.04968 1.25247 1.56347 1.24746 0.95598 0.97395 1.02353
0.86169 0.78857 0.84113 0.77391 1.20416 1.21633 1.21688 1.18942
0.90074 0.81903 1.44076 0.90458 1.46081 1.02349 0.98457 1.85982
1.22200 0.87872 0.89590 0.96968 1.23764 0.95861 0.99065 1.00650
1.22520 0.92309 0.87898 0.95677 0.93184 1.21935 0.81511 0.99198
0.97636 1.45870 1.06001 1.61903 1.21048 1.16885 0.82233 0.78820
0.85058 1.90657 1.86094 1.45870 1.19072 1.24687 0.97107 1.10766
1.02570 1.83420 0.99992 1.49171 1.14628 1.25315 1.00975 1.07684
1.03751 1.19733 1.00921 1.00523 0.94214 1.19886 0.92098 1.02724
0.98363 1.20876 0.91098 0.77619 0.85064 1.92986 1.87046 1.69635
1.68365 1.92967 1.73116 1.57180 1.95234 0.93654 0.90757 0.95491
0.90411 0.92683 0.90290 0.91473 0.76272 0.80750 0.83399 0.82696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.17 11.38 55.49 0.63 -25.54 16
2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16
3 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16
4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16
5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16
7 C -0.22 -5.75 10.51 -15.06 -0.16 -5.90 16
8 H 0.08 1.92 7.80 -52.49 -0.41 1.51 16
9 N -0.60 -14.00 3.57 -170.77 -0.61 -14.61 16
10 C 0.16 3.49 7.51 -2.97 -0.02 3.46 16
11 C -0.15 -2.65 7.86 -25.83 -0.20 -2.85 16
12 C 0.12 2.23 4.33 -66.89 -0.29 1.94 16
13 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
14 C 0.12 2.03 5.53 -4.04 -0.02 2.01 16
15 N -0.70 -11.20 5.52 -61.65 -0.34 -11.54 16
16 C 0.58 9.50 7.77 -12.89 -0.10 9.40 16
17 O -0.54 -9.74 14.01 5.19 0.07 -9.66 16
18 C -0.23 -3.24 6.45 -36.79 -0.24 -3.47 16
19 S 0.26 2.91 22.17 -107.50 -2.38 0.52 16
20 C -0.24 -2.35 10.92 29.18 0.32 -2.03 16
21 C -0.12 -1.41 9.90 -41.41 -0.41 -1.82 16
22 C -0.11 -1.55 5.37 -105.47 -0.57 -2.11 16
23 C 0.31 4.36 5.45 36.01 0.20 4.55 16
24 F -0.20 -3.00 17.32 2.25 0.04 -2.96 16
25 F -0.20 -2.82 17.26 2.25 0.04 -2.78 16
26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
27 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16
28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16
30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16
32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.40 6.11 7.60 -40.82 -0.31 5.80 16
34 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16
35 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16
36 H 0.16 2.30 5.04 -51.93 -0.26 2.04 16
LS Contribution 330.06 15.07 4.97 4.97
Total: -1.00 -30.38 330.06 -8.06 -38.44
By element:
Atomic # 1 Polarization: 7.61 SS G_CDS: -3.87 Total: 3.74 kcal
Atomic # 6 Polarization: 4.56 SS G_CDS: -1.59 Total: 2.96 kcal
Atomic # 7 Polarization: -51.36 SS G_CDS: -0.32 Total: -51.68 kcal
Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.66 kcal
Atomic # 9 Polarization: -5.81 SS G_CDS: 0.08 Total: -5.74 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal
Atomic # 16 Polarization: 2.91 SS G_CDS: -2.38 Total: 0.52 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -30.38 -8.06 -38.44 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001038976159.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.445 kcal
(2) G-P(sol) polarization free energy of solvation -30.382 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.827 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds