Wall clock time and date at job start Tue Mar 31 2020 11:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99689 * 2 1 4 4 H 1.48499 * 109.47196 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47043 * 300.00056 * 3 2 1 6 6 H 1.48497 * 109.47038 * 60.00424 * 3 2 1 7 7 C 1.38815 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99949 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49261 * 0.02562 * 9 7 2 11 11 C 1.53948 * 86.11709 * 155.35947 * 10 9 7 12 12 C 1.47578 * 134.49317 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.86915 * 90.32937 * 12 9 7 14 14 C 1.52998 * 113.76964 * 318.94458 * 12 9 7 15 15 N 1.46502 * 109.47070 * 78.50698 * 14 12 9 16 16 C 1.34774 * 119.99873 * 180.02562 * 15 14 12 17 17 O 1.21698 * 120.00485 * 359.97438 * 16 15 14 18 18 C 1.46588 * 119.99855 * 179.97438 * 16 15 14 19 19 S 1.75827 * 125.45766 * 354.43273 * 18 16 15 20 20 C 1.70616 * 91.56411 * 180.18144 * 19 18 16 21 21 C 1.33816 * 110.95544 * 359.83458 * 20 19 18 22 22 C 1.36649 * 125.45976 * 174.31256 * 18 16 15 23 23 C 1.50702 * 123.34958 * 0.03271 * 22 18 16 24 24 F 1.39903 * 109.47071 * 113.94248 * 23 22 18 25 25 F 1.39897 * 109.47368 * 233.94541 * 23 22 18 26 26 H 0.96991 * 120.00514 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.77061 * 41.06061 * 10 9 7 28 28 H 1.08996 * 113.87219 * 269.66814 * 10 9 7 29 29 H 1.09002 * 113.73949 * 269.26207 * 11 10 9 30 30 H 1.09002 * 113.84103 * 137.96439 * 11 10 9 31 31 H 1.08994 * 109.47226 * 318.49967 * 14 12 9 32 32 H 1.09002 * 109.47423 * 198.50126 * 14 12 9 33 33 H 0.97001 * 120.00189 * 359.97438 * 15 14 12 34 34 H 1.08004 * 124.52546 * 179.81486 * 20 19 18 35 35 H 1.08002 * 122.45490 * 179.97438 * 21 20 19 36 36 H 1.09005 * 109.47062 * 353.94566 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1031 -2.7574 -0.0005 11 6 0.3472 -4.0830 -0.6409 12 6 1.7203 -3.8101 -0.0015 13 1 1.8335 -4.2370 0.9950 14 6 2.9019 -4.1215 -0.9222 15 7 4.1496 -3.7186 -0.2687 16 6 5.3281 -3.8983 -0.8973 17 8 5.3559 -4.3957 -2.0077 18 6 6.5766 -3.4947 -0.2437 19 16 6.6958 -2.6414 1.2890 20 6 8.3996 -2.6269 1.2019 21 6 8.8270 -3.2324 0.0877 22 6 7.8342 -3.7232 -0.7267 23 6 8.1056 -4.4368 -2.0261 24 9 8.6825 -3.5447 -2.9363 25 9 8.9825 -5.5028 -1.7984 26 1 -0.4850 0.8399 0.0004 27 1 -0.7168 -2.1391 -0.6558 28 1 -0.5287 -2.8734 0.9962 29 1 0.3593 -4.0620 -1.7307 30 1 -0.1581 -4.9608 -0.2383 31 1 2.7881 -3.5735 -1.8574 32 1 2.9292 -5.1914 -1.1290 33 1 4.1275 -3.3218 0.6162 34 1 9.0470 -2.1874 1.9464 35 1 9.8752 -3.3281 -0.1543 36 1 7.1692 -4.8173 -2.4341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038976159.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:03 Heat of formation + Delta-G solvation = -65.743395 kcal Electronic energy + Delta-G solvation = -23985.490858 eV Core-core repulsion = 20040.296105 eV Total energy + Delta-G solvation = -3945.194753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.04644 -48.03830 -41.14118 -39.73124 -38.72401 -35.73249 -34.20381 -31.83505 -30.04343 -29.69349 -27.79355 -25.27708 -24.87509 -23.91995 -22.43263 -21.04900 -20.41833 -19.86332 -18.67387 -18.31620 -18.27019 -17.61945 -17.12382 -16.84992 -16.64991 -16.32986 -15.72478 -15.51688 -15.24283 -15.04172 -14.89922 -14.65810 -14.43912 -14.09958 -14.01874 -13.56692 -13.29688 -13.28115 -12.96642 -12.72713 -12.58035 -12.54225 -12.26096 -12.09886 -11.81401 -11.49344 -11.36687 -10.97436 -10.82339 -10.35763 -10.02910 -9.75855 -8.86903 -7.85539 -5.16977 -0.81707 0.20931 0.71212 1.09223 1.43845 1.46265 1.53876 1.85230 1.97574 2.47947 2.70526 3.27574 3.33222 3.39625 3.60466 3.64187 3.99356 4.00437 4.08195 4.10225 4.26920 4.36034 4.61637 4.70315 4.73212 4.87167 4.98966 5.00037 5.09013 5.10147 5.27357 5.36036 5.63474 5.76624 5.99909 6.28201 6.90474 6.97403 7.67250 8.61525 9.31363 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.004270 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.822893 B = 6555.371256 C = 7467.742033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.301 1.301 6 H -0.293 1.293 7 C -0.211 4.211 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.129 4.129 12 C 0.131 3.869 13 H 0.074 0.926 14 C 0.130 3.870 15 N -0.700 5.700 16 C 0.583 3.417 17 O -0.564 6.564 18 C -0.265 4.265 19 S 0.285 5.715 20 C -0.214 4.214 21 C -0.140 4.140 22 C -0.117 4.117 23 C 0.309 3.691 24 F -0.206 7.206 25 F -0.202 7.202 26 H 0.244 0.756 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.406 0.594 34 H 0.213 0.787 35 H 0.165 0.835 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.960 -9.795 4.443 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.229 1.229 6 H -0.220 1.220 7 C -0.339 4.339 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.168 4.168 12 C 0.025 3.975 13 H 0.092 0.908 14 C 0.005 3.995 15 N -0.349 5.349 16 C 0.370 3.630 17 O -0.447 6.447 18 C -0.386 4.386 19 S 0.554 5.446 20 C -0.351 4.351 21 C -0.169 4.169 22 C -0.135 4.135 23 C 0.254 3.746 24 F -0.187 7.187 25 F -0.184 7.184 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.242 0.758 34 H 0.230 0.770 35 H 0.183 0.817 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 13.969 -9.248 4.764 17.417 hybrid contribution 1.324 1.037 -0.716 1.828 sum 15.293 -8.210 4.048 17.823 Atomic orbital electron populations 1.69989 1.06243 1.25047 1.58967 1.25454 0.96326 1.00321 1.03946 0.85290 0.78668 0.80749 0.76466 1.18675 1.22899 1.21977 1.19300 0.90627 0.83017 1.41005 0.89730 1.46425 1.03300 0.99925 1.85932 1.22170 0.87099 0.91840 0.96508 1.23555 0.94885 0.97828 1.00524 1.22699 0.93229 0.84702 0.96918 0.90848 1.21734 0.81571 1.00150 0.96008 1.45821 1.05794 1.62104 1.21176 1.17173 0.82874 0.78168 0.84754 1.90639 1.86646 1.47098 1.20273 1.24519 0.96144 1.13306 1.04647 1.83352 1.01114 1.47772 1.12355 1.25772 1.00554 1.05369 1.03441 1.19905 1.01312 1.01172 0.94522 1.19994 0.92700 1.02674 0.98154 1.20778 0.90574 0.77664 0.85574 1.92968 1.87115 1.69868 1.68797 1.92964 1.73021 1.57157 1.95236 0.94638 0.94391 0.95912 0.90291 0.88669 0.93139 0.89099 0.75797 0.77025 0.81743 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.96 11.38 21.65 0.25 -55.72 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.96 44.48 29.55 68.60 2.03 46.51 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.21 -10.85 10.51 84.03 0.88 -9.96 16 8 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 9 N -0.63 -28.96 3.57 -694.21 -2.48 -31.44 16 10 C 0.15 6.56 7.51 86.48 0.65 7.21 16 11 C -0.13 -4.17 7.86 31.24 0.25 -3.92 16 12 C 0.13 4.43 4.33 45.08 0.20 4.63 16 13 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 14 C 0.13 4.15 5.53 86.38 0.48 4.63 16 15 N -0.70 -21.49 5.52 -467.18 -2.58 -24.07 16 16 C 0.58 18.53 7.77 86.42 0.67 19.20 16 17 O -0.56 -20.50 14.01 -4.34 -0.06 -20.56 16 18 C -0.26 -7.10 6.45 24.08 0.16 -6.94 16 19 S 0.28 5.60 22.17 -56.49 -1.25 4.35 16 20 C -0.21 -3.34 10.92 66.81 0.73 -2.61 16 21 C -0.14 -2.79 9.90 21.08 0.21 -2.58 16 22 C -0.12 -3.01 5.37 -20.42 -0.11 -3.12 16 23 C 0.31 8.59 5.45 71.24 0.39 8.97 16 24 F -0.21 -6.11 17.32 44.97 0.78 -5.33 16 25 F -0.20 -5.43 17.26 44.97 0.78 -4.66 16 26 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.04 1.93 7.16 -2.39 -0.02 1.91 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.41 11.65 7.60 -92.71 -0.70 10.95 16 34 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.15 4.36 5.04 -2.38 -0.01 4.34 16 Total: -1.00 -67.17 330.06 2.85 -64.32 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.43 Total: 14.34 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 4.96 Total: 12.26 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.81 Total: -111.23 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.06 Total: -20.56 kcal Atomic # 9 Polarization: -11.54 SS G_CDS: 1.56 Total: -9.99 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.25 Total: 4.35 kcal Total: -67.17 2.85 -64.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038976159.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.421 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds