Wall clock time and date at job start Tue Mar 31 2020 10:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30130 * 121.06045 * 2 1 4 4 S 1.69951 * 105.76398 * 180.02562 * 3 2 1 5 5 C 1.72303 * 94.57300 * 359.97438 * 4 3 2 6 6 N 1.38318 * 127.50065 * 180.02562 * 5 4 3 7 7 C 1.46499 * 120.00066 * 0.02605 * 6 5 4 8 8 C 1.53000 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47473 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00376 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00115 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.46829 * 179.97438 * 13 11 10 15 15 C 1.76204 * 99.99823 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99808 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00054 * 180.02562 * 15 14 13 18 18 N 1.31633 * 120.00069 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99948 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47223 * 90.00279 * 19 17 15 21 21 H 1.48505 * 109.47235 * 209.99936 * 19 17 15 22 22 H 1.48504 * 109.47335 * 329.99733 * 19 17 15 23 23 N 1.31282 * 121.06253 * 180.28459 * 2 1 3 24 24 H 1.08995 * 109.46942 * 89.98442 * 1 2 3 25 25 H 1.09004 * 109.47249 * 209.98027 * 1 2 3 26 26 H 1.08998 * 109.47189 * 329.98097 * 1 2 3 27 27 H 0.97005 * 119.99485 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46813 * 60.00064 * 7 6 5 29 29 H 1.08992 * 109.47397 * 300.00125 * 7 6 5 30 30 H 1.09002 * 109.47398 * 300.00326 * 8 7 6 31 31 H 1.09001 * 109.47194 * 60.00507 * 8 7 6 32 32 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 33 33 H 1.08998 * 109.47533 * 59.99948 * 9 8 7 34 34 H 0.97004 * 119.99396 * 0.02562 * 10 9 8 35 35 H 1.09002 * 109.46793 * 299.99519 * 13 11 10 36 36 H 1.08992 * 109.46831 * 59.99969 * 13 11 10 37 37 H 0.96999 * 119.99948 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6664 -0.0007 5 6 3.4971 -1.0266 -0.0002 6 7 4.4186 -2.0581 0.0000 7 6 5.8528 -1.7591 0.0004 8 6 6.6463 -3.0672 0.0012 9 6 8.1441 -2.7551 0.0023 10 7 8.9041 -4.0075 0.0025 11 6 10.2515 -3.9783 0.0039 12 8 10.8350 -2.9149 0.0055 13 6 11.0332 -5.2667 0.0035 14 16 12.8051 -4.8973 0.0049 15 6 13.4588 -6.5336 0.0050 16 1 12.7905 -7.3820 0.0039 17 6 14.8324 -6.7322 0.0065 18 7 15.6469 -5.6981 0.0084 19 14 15.5253 -8.4669 0.0058 20 1 15.7107 -8.9253 -1.3944 21 1 16.8342 -8.4774 0.7075 22 1 14.5822 -9.3770 0.7040 23 7 2.1844 -1.1245 -0.0056 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5141 27 1 4.1152 -2.9795 -0.0001 28 1 6.1033 -1.1820 0.8905 29 1 6.1039 -1.1820 -0.8894 30 1 6.3952 -3.6441 0.8913 31 1 6.3959 -3.6447 -0.8886 32 1 8.3957 -2.1780 -0.8876 33 1 8.3944 -2.1777 0.8923 34 1 8.4374 -4.8579 0.0016 35 1 10.7815 -5.8446 0.8928 36 1 10.7833 -5.8430 -0.8872 37 1 16.6069 -5.8369 0.0091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094311816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:38 Heat of formation + Delta-G solvation = 8.329995 kcal Electronic energy + Delta-G solvation = -19690.900431 eV Core-core repulsion = 16335.050879 eV Total energy + Delta-G solvation = -3355.849552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50628 -39.34135 -37.70066 -35.21559 -32.88275 -32.46502 -31.17200 -30.00407 -29.13868 -25.85778 -25.40004 -23.73148 -22.51371 -20.64316 -20.20364 -19.13627 -17.92664 -17.41875 -16.61656 -16.46684 -16.23867 -15.85761 -15.29505 -14.99199 -14.83693 -14.45364 -13.96461 -13.85452 -13.23484 -13.10438 -13.05628 -12.82390 -12.48990 -12.19678 -12.18891 -12.05357 -11.86160 -11.66041 -11.26872 -11.09571 -11.06200 -10.79823 -10.01470 -9.85974 -9.81108 -9.52244 -9.11476 -9.03077 -8.64713 -8.28750 -6.54684 -6.25383 -3.96522 0.36858 0.60840 1.42962 2.17002 2.31745 2.96249 2.99772 3.19681 3.24933 3.28513 3.60685 3.85595 4.16690 4.26224 4.30957 4.45012 4.85415 4.87188 4.97826 5.07067 5.09131 5.09856 5.10054 5.20734 5.34102 5.52731 5.57286 5.61952 5.74436 5.82529 5.95953 6.07356 6.45878 6.57609 7.37351 7.55281 7.57257 8.31346 8.50116 9.20019 10.82032 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.060280 B = 0.001604 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.385384 B =17455.612465 C =17883.644407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.305 3.695 3 N -0.505 5.505 4 S 0.186 5.814 5 C 0.343 3.657 6 N -0.666 5.666 7 C 0.118 3.882 8 C -0.141 4.141 9 C 0.125 3.875 10 N -0.740 5.740 11 C 0.532 3.468 12 O -0.515 6.515 13 C -0.154 4.154 14 S -0.060 6.060 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 N -0.588 5.588 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.417 0.583 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.219 6.977 -0.013 29.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.015 3.985 3 N -0.339 5.339 4 S 0.320 5.680 5 C -0.037 4.037 6 N -0.305 5.305 7 C -0.006 4.006 8 C -0.180 4.180 9 C 0.000 4.000 10 N -0.396 5.396 11 C 0.318 3.682 12 O -0.389 6.389 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 N -0.324 5.324 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.256 0.744 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.579 10.108 -0.012 28.436 hybrid contribution -1.017 -4.026 -0.023 4.153 sum -27.596 6.081 -0.035 28.258 Atomic orbital electron populations 1.20405 0.83927 1.04343 1.04141 1.23197 0.99737 0.82186 0.93368 1.77549 0.97270 1.25286 1.33755 1.85084 1.13501 0.97589 1.71849 1.25163 0.90263 0.95648 0.92601 1.43899 1.03529 1.06044 1.77042 1.21662 0.76683 0.98652 1.03638 1.21929 0.94865 0.96841 1.04332 1.21073 0.88264 0.87538 1.03152 1.45945 1.06520 1.08755 1.78338 1.20334 0.81384 0.91399 0.75054 1.90717 1.69051 1.31877 1.47255 1.23531 1.04624 0.97310 1.04977 1.85413 0.89719 1.11477 1.96732 1.22864 0.94381 0.92154 1.59114 0.90906 1.24991 0.95874 0.98198 0.94476 1.70015 1.03665 1.29804 1.46745 0.86164 0.78376 0.82565 0.78365 1.20255 1.20722 1.19705 1.67347 1.03046 1.30175 1.31848 0.89423 0.89325 0.89530 0.74423 0.90048 0.90048 0.89887 0.89887 0.91039 0.91027 0.76719 0.89161 0.89167 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.42 36.01 0.38 -0.02 16 2 C 0.30 2.97 7.56 -159.04 -1.20 1.77 16 3 N -0.50 -5.53 12.15 29.54 0.36 -5.18 16 4 S 0.19 1.70 23.17 -107.50 -2.49 -0.79 16 5 C 0.34 2.96 8.57 -86.35 -0.74 2.22 16 6 N -0.67 -3.83 5.70 -61.57 -0.35 -4.19 16 7 C 0.12 0.55 5.73 -4.04 -0.02 0.53 16 8 C -0.14 -0.64 5.44 -26.73 -0.15 -0.78 16 9 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 10 N -0.74 -8.24 5.56 -60.29 -0.33 -8.57 16 11 C 0.53 9.16 7.85 -10.98 -0.09 9.08 16 12 O -0.52 -11.07 15.86 5.55 0.09 -10.98 16 13 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 14 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 15 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 16 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 19 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 N -0.59 -5.90 10.61 -14.57 -0.15 -6.06 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.42 1.86 8.60 -40.82 -0.35 1.51 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 3.20 8.47 -40.82 -0.35 2.85 16 35 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 36 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -36.44 352.85 -10.39 -46.82 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.89 Total: -1.96 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.43 Total: -1.59 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.25 Total: -49.03 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -4.70 Total: -4.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.44 -10.39 -46.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094311816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.152 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds