Wall clock time and date at job start Tue Mar 31 2020 10:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30130 * 121.06045 * 2 1 4 4 S 1.69951 * 105.76398 * 180.02562 * 3 2 1 5 5 C 1.72303 * 94.57300 * 359.97438 * 4 3 2 6 6 N 1.38318 * 127.50065 * 180.02562 * 5 4 3 7 7 C 1.46499 * 120.00066 * 0.02605 * 6 5 4 8 8 C 1.53000 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47473 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00376 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00115 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.46829 * 179.97438 * 13 11 10 15 15 C 1.76204 * 99.99823 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99808 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00054 * 180.02562 * 15 14 13 18 18 N 1.31633 * 120.00069 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99948 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47223 * 90.00279 * 19 17 15 21 21 H 1.48505 * 109.47235 * 209.99936 * 19 17 15 22 22 H 1.48504 * 109.47335 * 329.99733 * 19 17 15 23 23 N 1.31282 * 121.06253 * 180.28459 * 2 1 3 24 24 H 1.08995 * 109.46942 * 89.98442 * 1 2 3 25 25 H 1.09004 * 109.47249 * 209.98027 * 1 2 3 26 26 H 1.08998 * 109.47189 * 329.98097 * 1 2 3 27 27 H 0.97005 * 119.99485 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46813 * 60.00064 * 7 6 5 29 29 H 1.08992 * 109.47397 * 300.00125 * 7 6 5 30 30 H 1.09002 * 109.47398 * 300.00326 * 8 7 6 31 31 H 1.09001 * 109.47194 * 60.00507 * 8 7 6 32 32 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 33 33 H 1.08998 * 109.47533 * 59.99948 * 9 8 7 34 34 H 0.97004 * 119.99396 * 0.02562 * 10 9 8 35 35 H 1.09002 * 109.46793 * 299.99519 * 13 11 10 36 36 H 1.08992 * 109.46831 * 59.99969 * 13 11 10 37 37 H 0.96999 * 119.99948 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6664 -0.0007 5 6 3.4971 -1.0266 -0.0002 6 7 4.4186 -2.0581 0.0000 7 6 5.8528 -1.7591 0.0004 8 6 6.6463 -3.0672 0.0012 9 6 8.1441 -2.7551 0.0023 10 7 8.9041 -4.0075 0.0025 11 6 10.2515 -3.9783 0.0039 12 8 10.8350 -2.9149 0.0055 13 6 11.0332 -5.2667 0.0035 14 16 12.8051 -4.8973 0.0049 15 6 13.4588 -6.5336 0.0050 16 1 12.7905 -7.3820 0.0039 17 6 14.8324 -6.7322 0.0065 18 7 15.6469 -5.6981 0.0084 19 14 15.5253 -8.4669 0.0058 20 1 15.7107 -8.9253 -1.3944 21 1 16.8342 -8.4774 0.7075 22 1 14.5822 -9.3770 0.7040 23 7 2.1844 -1.1245 -0.0056 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5141 27 1 4.1152 -2.9795 -0.0001 28 1 6.1033 -1.1820 0.8905 29 1 6.1039 -1.1820 -0.8894 30 1 6.3952 -3.6441 0.8913 31 1 6.3959 -3.6447 -0.8886 32 1 8.3957 -2.1780 -0.8876 33 1 8.3944 -2.1777 0.8923 34 1 8.4374 -4.8579 0.0016 35 1 10.7815 -5.8446 0.8928 36 1 10.7833 -5.8430 -0.8872 37 1 16.6069 -5.8369 0.0091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094311816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:37 Heat of formation + Delta-G solvation = -18.743859 kcal Electronic energy + Delta-G solvation = -19692.074441 eV Core-core repulsion = 16335.050879 eV Total energy + Delta-G solvation = -3357.023563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15816 -40.60144 -38.30892 -36.16779 -34.57575 -33.66310 -32.04940 -30.57663 -30.33636 -27.69178 -26.44203 -24.32804 -23.09779 -21.80199 -20.95561 -19.81132 -19.78625 -18.13245 -17.70163 -17.27015 -17.20512 -16.86908 -16.65825 -16.23769 -16.00813 -15.59383 -15.05818 -14.67410 -14.61449 -14.38594 -13.70365 -13.57969 -13.34230 -13.22741 -13.15487 -12.88561 -12.80930 -12.61375 -12.58556 -12.53169 -12.41294 -11.81418 -11.72024 -11.13491 -10.96694 -10.71391 -10.45208 -10.26009 -10.10181 -9.25269 -8.65482 -8.33940 -6.11823 -0.29207 -0.04556 0.76792 1.27637 1.43199 1.46893 1.55803 1.63439 1.64864 1.66706 2.27634 2.35478 3.00480 3.31116 3.33045 3.74912 3.90137 3.91751 4.09856 4.32146 4.34293 4.45596 4.46505 4.54034 4.56099 4.68606 4.70032 4.81127 5.04606 5.05536 5.18200 5.40346 5.42830 5.46521 6.11052 6.20586 6.52788 6.72962 7.07700 7.27243 8.75178 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.060280 B = 0.001604 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.385384 B =17455.612465 C =17883.644407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.298 3.702 3 N -0.538 5.538 4 S 0.178 5.822 5 C 0.343 3.657 6 N -0.649 5.649 7 C 0.116 3.884 8 C -0.123 4.123 9 C 0.120 3.880 10 N -0.712 5.712 11 C 0.533 3.467 12 O -0.566 6.566 13 C -0.130 4.130 14 S -0.155 6.155 15 C -0.547 4.547 16 H 0.084 0.916 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.258 1.258 23 N -0.607 5.607 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.426 0.574 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.419 0.581 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.174 4.743 -0.032 30.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.009 3.991 3 N -0.373 5.373 4 S 0.311 5.689 5 C -0.037 4.037 6 N -0.288 5.288 7 C -0.008 4.008 8 C -0.161 4.161 9 C -0.004 4.004 10 N -0.366 5.366 11 C 0.319 3.681 12 O -0.445 6.445 13 C -0.282 4.282 14 S 0.073 5.927 15 C -0.694 4.694 16 H 0.102 0.898 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.181 1.181 23 N -0.344 5.344 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.266 0.734 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.256 0.744 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.590 7.827 -0.031 29.642 hybrid contribution -0.521 -3.319 -0.019 3.360 sum -29.112 4.508 -0.050 29.459 Atomic orbital electron populations 1.20557 0.81743 1.05215 1.05195 1.23825 1.01197 0.81873 0.92199 1.77529 0.98049 1.26271 1.35468 1.84978 1.13099 0.98183 1.72665 1.25321 0.90374 0.95920 0.92069 1.43953 1.03474 1.05926 1.75467 1.21725 0.75997 0.98947 1.04138 1.21756 0.91449 0.96913 1.06029 1.21233 0.90455 0.86107 1.02601 1.45651 1.04464 1.10924 1.75600 1.20038 0.83171 0.89798 0.75143 1.90707 1.70507 1.33132 1.50116 1.23380 0.98963 0.98926 1.06896 1.85595 0.97032 1.13055 1.97061 1.23216 0.95071 0.92343 1.58817 0.89824 1.26113 0.96276 1.02956 0.93756 1.70183 1.04005 1.32558 1.48036 0.84963 0.77609 0.76705 0.78761 1.19357 1.20425 1.18149 1.67418 1.03534 1.30387 1.33049 0.88152 0.88262 0.88786 0.73360 0.89670 0.89672 0.88219 0.88217 0.91730 0.91719 0.74396 0.87117 0.87103 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.42 71.24 0.74 0.05 16 2 C 0.30 5.60 7.56 139.40 1.05 6.65 16 3 N -0.54 -11.72 12.15 -60.45 -0.73 -12.45 16 4 S 0.18 3.17 23.17 -56.49 -1.31 1.86 16 5 C 0.34 5.45 8.57 178.86 1.53 6.98 16 6 N -0.65 -5.87 5.70 -348.71 -1.99 -7.86 16 7 C 0.12 0.79 5.73 86.38 0.50 1.28 16 8 C -0.12 -0.67 5.44 30.59 0.17 -0.51 16 9 C 0.12 1.79 5.67 86.38 0.49 2.28 16 10 N -0.71 -13.93 5.56 -463.06 -2.57 -16.50 16 11 C 0.53 17.75 7.85 87.66 0.69 18.44 16 12 O -0.57 -24.63 15.86 -3.05 -0.05 -24.68 16 13 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 14 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 15 C -0.55 -30.51 9.50 67.95 0.65 -29.87 16 16 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 17 C 0.01 0.77 5.49 84.86 0.47 1.24 16 18 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 19 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 N -0.61 -11.46 10.61 -200.02 -2.12 -13.58 16 24 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.43 2.48 8.60 -92.70 -0.80 1.68 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.42 5.04 8.47 -92.71 -0.79 4.25 16 35 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -82.14 352.85 -1.37 -83.51 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -0.47 Total: 7.27 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 6.72 Total: 2.18 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -7.13 Total: -105.39 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.68 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -2.47 Total: -7.64 kcal Total: -82.14 -1.37 -83.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094311816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.764 kcal (2) G-P(sol) polarization free energy of solvation -82.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds