Wall clock time and date at job start Tue Mar 31 2020 11:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46871 * 2 1 4 4 C 1.46501 * 119.99638 * 269.99491 * 3 2 1 5 5 C 1.50698 * 109.47461 * 269.99845 * 4 3 2 6 6 H 1.07991 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99828 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00254 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00034 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47028 * 59.99909 * 9 7 5 11 11 H 1.48493 * 109.47208 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46779 * 300.00189 * 9 7 5 13 13 C 1.34780 * 120.00222 * 90.00412 * 3 2 1 14 14 O 1.21277 * 120.00144 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99833 * 359.97438 * 13 3 2 16 16 O 1.42901 * 109.47174 * 180.02562 * 15 13 3 17 17 C 1.35987 * 116.99819 * 179.97438 * 16 15 13 18 18 C 1.38549 * 120.45029 * 0.02562 * 17 16 15 19 19 N 1.31933 * 120.73100 * 179.97438 * 18 17 16 20 20 C 1.32044 * 121.76988 * 0.02562 * 19 18 17 21 21 F 1.35104 * 119.58226 * 180.02562 * 20 19 18 22 22 C 1.38476 * 120.83011 * 0.02562 * 20 19 18 23 23 C 1.38610 * 119.18092 * 0.25677 * 22 20 19 24 24 Cl 1.73604 * 120.81019 * 179.74911 * 23 22 20 25 25 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47254 * 300.00149 * 1 2 3 27 27 H 1.08998 * 109.47199 * 60.00254 * 1 2 3 28 28 H 1.08997 * 109.47254 * 239.99851 * 2 1 3 29 29 H 1.08998 * 109.47199 * 119.99746 * 2 1 3 30 30 H 1.09000 * 109.47160 * 30.00564 * 4 3 2 31 31 H 1.09009 * 109.46808 * 150.00352 * 4 3 2 32 32 H 0.96999 * 119.99839 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46989 * 60.00434 * 15 13 3 34 34 H 1.09001 * 109.47386 * 300.00303 * 15 13 3 35 35 H 1.07994 * 119.63795 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.40581 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3489 3.1256 -3.6182 9 14 5.9131 2.0957 -3.4176 10 1 6.1403 0.6389 -3.5947 11 1 6.1606 2.7957 -4.7036 12 1 6.8409 2.6192 -2.3830 13 6 2.2429 2.0167 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3064 2.4723 16 8 2.3005 2.1821 3.5584 17 6 2.1263 1.6923 4.8150 18 6 1.6689 0.3987 5.0073 19 7 1.4984 -0.0822 6.2240 20 6 1.7529 0.6406 7.2993 21 9 1.5631 0.1035 8.5243 22 6 2.2119 1.9423 7.1871 23 6 2.3986 2.4868 5.9262 24 17 2.9661 4.1164 5.7364 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1411 -1.1385 32 1 3.6750 3.5160 -4.4441 33 1 2.6213 0.4188 2.5302 34 1 0.9433 1.0126 2.5299 35 1 1.4495 -0.2228 4.1519 36 1 2.4176 2.5275 8.0712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117130478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:28 Heat of formation + Delta-G solvation = -75.466360 kcal Electronic energy + Delta-G solvation = -23554.925807 eV Core-core repulsion = 19594.892938 eV Total energy + Delta-G solvation = -3960.032869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.31882 -41.10945 -39.41532 -37.97639 -36.97636 -35.44690 -32.94492 -32.74299 -30.66068 -30.24960 -29.02897 -26.70420 -24.46975 -23.62994 -23.16374 -22.52671 -19.05037 -18.92751 -18.29225 -17.80415 -16.83299 -16.52621 -16.26441 -16.11980 -15.63356 -15.25956 -15.02696 -14.44866 -14.38922 -14.11191 -13.67038 -13.63027 -13.55424 -13.21235 -12.77568 -12.42513 -12.38997 -12.13000 -11.79149 -11.47028 -11.29611 -11.25677 -11.00871 -10.83370 -10.61120 -10.24270 -10.19752 -9.95207 -9.74114 -9.10896 -8.74802 -8.49172 -7.84678 -6.10639 -4.15997 0.33385 0.49848 1.58671 2.43668 2.98915 3.12523 3.17197 3.28502 3.33534 3.36832 3.75350 3.93700 4.19675 4.39463 4.45616 4.65910 4.78999 4.83200 4.92817 4.93931 5.19311 5.22608 5.24355 5.46474 5.60746 5.86061 5.91196 6.09742 6.34261 6.65248 6.94876 7.08445 7.32237 7.39804 7.84717 8.14096 8.19801 8.76182 8.91440 9.49365 10.97495 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.003176 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.620455 B = 8812.956790 C = 9589.965446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.249 3.751 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.512 6.512 15 C 0.031 3.969 16 O -0.262 6.262 17 C 0.088 3.912 18 C 0.064 3.936 19 N -0.471 5.471 20 C 0.278 3.722 21 F -0.108 7.108 22 C -0.146 4.146 23 C -0.006 4.006 24 Cl -0.014 7.014 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.181 0.819 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 -6.695 18.607 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.387 6.387 15 C -0.047 4.047 16 O -0.172 6.172 17 C 0.038 3.962 18 C -0.095 4.095 19 N -0.186 5.186 20 C 0.123 3.877 21 F -0.087 7.087 22 C -0.168 4.168 23 C -0.041 4.041 24 Cl 0.016 6.984 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.197 0.803 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.798 -6.456 18.455 20.393 hybrid contribution 1.166 0.349 -0.282 1.249 sum -4.632 -6.107 18.173 19.723 Atomic orbital electron populations 1.22250 0.96469 1.01745 1.02537 1.21513 0.93746 0.83965 1.03042 1.48214 1.63808 1.13372 1.07094 1.19334 0.96493 0.93706 0.77423 1.21374 0.96842 1.32340 1.06433 0.92420 1.24925 0.97914 0.94799 0.96326 1.69914 1.35786 1.33169 1.14357 0.86549 0.84677 0.78279 0.77888 1.20204 1.21132 1.20122 1.19522 0.80035 0.87175 0.84037 1.90751 1.44074 1.17390 1.86502 1.22976 1.02208 0.93587 0.85952 1.86350 1.80979 1.39792 1.10076 1.19884 0.97068 0.93052 0.86226 1.22723 1.00146 0.92282 0.94322 1.66880 1.15864 1.37638 0.98209 1.17722 1.00323 0.88657 0.80961 1.91643 1.92754 1.86581 1.37695 1.21588 1.02395 0.95119 0.97680 1.20380 1.02751 0.89537 0.91455 1.98448 1.86519 1.15808 1.97669 0.91822 0.93148 0.91686 0.89311 0.91890 0.94592 0.93696 0.92556 0.88809 0.88922 0.80262 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.10 1.39 5.93 -4.04 -0.02 1.37 16 3 N -0.59 -11.41 2.46 -175.06 -0.43 -11.84 16 4 C 0.25 6.16 5.16 -5.19 -0.03 6.14 16 5 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 9 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.51 9.86 7.75 -10.99 -0.09 9.77 16 14 O -0.51 -12.65 16.08 -14.35 -0.23 -12.88 16 15 C 0.03 0.41 3.78 36.00 0.14 0.55 16 16 O -0.26 -3.87 9.23 -39.61 -0.37 -4.24 16 17 C 0.09 1.06 6.70 -39.08 -0.26 0.80 16 18 C 0.06 0.65 10.22 -17.39 -0.18 0.47 16 19 N -0.47 -5.35 10.37 -13.50 -0.14 -5.49 16 20 C 0.28 2.94 8.40 -17.37 -0.15 2.79 16 21 F -0.11 -1.12 17.29 2.25 0.04 -1.08 16 22 C -0.15 -1.36 9.90 -39.36 -0.39 -1.75 16 23 C -0.01 -0.07 6.38 -39.06 -0.25 -0.32 16 24 Cl -0.01 -0.17 28.64 -51.86 -1.48 -1.65 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.52 7.22 -51.93 -0.37 0.15 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.29 8.07 -51.93 -0.42 0.88 16 29 H 0.06 0.65 6.44 -51.93 -0.33 0.32 16 30 H 0.04 0.89 8.07 -51.93 -0.42 0.48 16 31 H 0.05 1.27 7.42 -51.92 -0.39 0.89 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.09 0.97 6.94 -51.93 -0.36 0.61 16 34 H 0.09 0.91 6.72 -51.93 -0.35 0.56 16 35 H 0.18 1.32 6.31 -52.49 -0.33 0.99 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -33.30 335.17 -6.90 -40.20 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -3.79 Total: -4.31 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.26 Total: 5.08 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.17 Total: -42.52 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.60 Total: -17.12 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.48 Total: -1.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.30 -6.90 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117130478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.266 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds