Wall clock time and date at job start Tue Mar 31 2020 11:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46871 * 2 1 4 4 C 1.46501 * 119.99638 * 269.99491 * 3 2 1 5 5 C 1.50698 * 109.47461 * 269.99845 * 4 3 2 6 6 H 1.07991 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99828 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00254 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00034 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47028 * 59.99909 * 9 7 5 11 11 H 1.48493 * 109.47208 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46779 * 300.00189 * 9 7 5 13 13 C 1.34780 * 120.00222 * 90.00412 * 3 2 1 14 14 O 1.21277 * 120.00144 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99833 * 359.97438 * 13 3 2 16 16 O 1.42901 * 109.47174 * 180.02562 * 15 13 3 17 17 C 1.35987 * 116.99819 * 179.97438 * 16 15 13 18 18 C 1.38549 * 120.45029 * 0.02562 * 17 16 15 19 19 N 1.31933 * 120.73100 * 179.97438 * 18 17 16 20 20 C 1.32044 * 121.76988 * 0.02562 * 19 18 17 21 21 F 1.35104 * 119.58226 * 180.02562 * 20 19 18 22 22 C 1.38476 * 120.83011 * 0.02562 * 20 19 18 23 23 C 1.38610 * 119.18092 * 0.25677 * 22 20 19 24 24 Cl 1.73604 * 120.81019 * 179.74911 * 23 22 20 25 25 H 1.09001 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47254 * 300.00149 * 1 2 3 27 27 H 1.08998 * 109.47199 * 60.00254 * 1 2 3 28 28 H 1.08997 * 109.47254 * 239.99851 * 2 1 3 29 29 H 1.08998 * 109.47199 * 119.99746 * 2 1 3 30 30 H 1.09000 * 109.47160 * 30.00564 * 4 3 2 31 31 H 1.09009 * 109.46808 * 150.00352 * 4 3 2 32 32 H 0.96999 * 119.99839 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46989 * 60.00434 * 15 13 3 34 34 H 1.09001 * 109.47386 * 300.00303 * 15 13 3 35 35 H 1.07994 * 119.63795 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.40581 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3489 3.1256 -3.6182 9 14 5.9131 2.0957 -3.4176 10 1 6.1403 0.6389 -3.5947 11 1 6.1606 2.7957 -4.7036 12 1 6.8409 2.6192 -2.3830 13 6 2.2429 2.0167 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3064 2.4723 16 8 2.3005 2.1821 3.5584 17 6 2.1263 1.6923 4.8150 18 6 1.6689 0.3987 5.0073 19 7 1.4984 -0.0822 6.2240 20 6 1.7529 0.6406 7.2993 21 9 1.5631 0.1035 8.5243 22 6 2.2119 1.9423 7.1871 23 6 2.3986 2.4868 5.9262 24 17 2.9661 4.1164 5.7364 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1411 -1.1385 32 1 3.6750 3.5160 -4.4441 33 1 2.6213 0.4188 2.5302 34 1 0.9433 1.0126 2.5299 35 1 1.4495 -0.2228 4.1519 36 1 2.4176 2.5275 8.0712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117130478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:28 Heat of formation + Delta-G solvation = -97.045552 kcal Electronic energy + Delta-G solvation = -23555.861551 eV Core-core repulsion = 19594.892938 eV Total energy + Delta-G solvation = -3960.968613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.11777 -42.01060 -40.75204 -39.06664 -37.85980 -36.98619 -34.92610 -33.59707 -31.78356 -31.42657 -30.26452 -28.35943 -25.49755 -24.79432 -24.37685 -23.86893 -20.36454 -19.81921 -19.16881 -18.86433 -18.58159 -17.71937 -17.56861 -17.18875 -17.03118 -16.32837 -16.02223 -15.88683 -15.67794 -15.03505 -14.75948 -14.65697 -14.52339 -14.42987 -14.08990 -13.83879 -13.57375 -13.29068 -13.25303 -13.08661 -12.63718 -12.53864 -12.44608 -12.19732 -12.12884 -11.83838 -11.73101 -11.08152 -10.75842 -10.64587 -10.63607 -9.60990 -9.49456 -8.22389 -6.36819 -0.42543 -0.34826 0.73064 1.36945 1.40353 1.42306 1.49201 1.69127 2.19869 2.33866 2.39308 2.56273 3.07970 3.13422 3.32409 3.60583 3.62853 3.87523 3.97671 4.01084 4.21365 4.27285 4.44512 4.46278 4.66547 4.93171 5.01495 5.08291 5.13539 5.22772 5.43985 5.56246 5.76630 5.87449 6.05576 6.29200 6.66782 6.74401 7.26123 7.40726 8.84659 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.003176 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.620455 B = 8812.956790 C = 9589.965446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 N -0.595 5.595 4 C 0.264 3.736 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.258 1.258 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.497 3.503 14 O -0.582 6.582 15 C 0.043 3.957 16 O -0.294 6.294 17 C 0.075 3.925 18 C 0.077 3.923 19 N -0.485 5.485 20 C 0.274 3.726 21 F -0.108 7.108 22 C -0.132 4.132 23 C -0.017 4.017 24 Cl -0.029 7.029 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.028 0.972 31 H -0.004 1.004 32 H 0.267 0.733 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.214 0.786 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -9.443 20.180 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.143 3.857 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.182 1.182 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.284 3.716 14 O -0.462 6.462 15 C -0.034 4.034 16 O -0.205 6.205 17 C 0.025 3.975 18 C -0.081 4.081 19 N -0.200 5.200 20 C 0.120 3.880 21 F -0.087 7.087 22 C -0.154 4.154 23 C -0.052 4.052 24 Cl 0.000 7.000 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.046 0.954 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.230 0.770 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -5.858 -9.272 20.056 22.859 hybrid contribution 1.119 1.182 -0.703 1.773 sum -4.740 -8.090 19.353 21.505 Atomic orbital electron populations 1.22204 0.94378 1.03840 1.01917 1.21920 0.95460 0.80751 1.04805 1.48193 1.63667 1.15384 1.05505 1.18728 0.95383 0.91550 0.80067 1.21708 0.97955 1.32122 1.06513 0.92500 1.25838 1.02241 0.94500 0.96517 1.70040 1.37799 1.34159 1.14822 0.85505 0.79163 0.79125 0.77265 1.18217 1.20578 1.20489 1.20630 0.78311 0.86639 0.86010 1.90713 1.47102 1.20591 1.87753 1.22937 1.05479 0.92858 0.82173 1.86299 1.81890 1.41058 1.11215 1.20030 0.98291 0.94034 0.85136 1.23150 0.98550 0.91568 0.94854 1.66938 1.16387 1.38043 0.98680 1.17861 1.00250 0.88952 0.80927 1.91646 1.92728 1.86593 1.37719 1.21734 1.01028 0.94779 0.97818 1.20581 1.03355 0.89030 0.92260 1.98444 1.86795 1.17021 1.97750 0.88248 0.91741 0.94434 0.90510 0.87171 0.95437 0.98624 0.92431 0.85011 0.84710 0.77016 0.79264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.24 71.98 0.74 -2.52 16 2 C 0.09 2.30 5.93 86.38 0.51 2.81 16 3 N -0.60 -22.92 2.46 -826.15 -2.03 -24.95 16 4 C 0.26 13.67 5.16 85.63 0.44 14.11 16 5 C -0.54 -30.48 9.39 25.60 0.24 -30.24 16 6 H 0.06 3.11 7.81 -2.92 -0.02 3.09 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 9 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 C 0.50 19.17 7.75 87.66 0.68 19.85 16 14 O -0.58 -30.02 16.08 16.02 0.26 -29.76 16 15 C 0.04 0.99 3.78 71.23 0.27 1.26 16 16 O -0.29 -8.19 9.23 -74.36 -0.69 -8.87 16 17 C 0.07 1.62 6.70 22.59 0.15 1.77 16 18 C 0.08 1.28 10.22 84.75 0.87 2.15 16 19 N -0.49 -9.44 10.37 -196.63 -2.04 -11.48 16 20 C 0.27 5.08 8.40 84.72 0.71 5.79 16 21 F -0.11 -2.00 17.29 44.97 0.78 -1.22 16 22 C -0.13 -2.17 9.90 22.42 0.22 -1.95 16 23 C -0.02 -0.36 6.38 22.61 0.14 -0.22 16 24 Cl -0.03 -0.70 28.64 -2.72 -0.08 -0.78 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.10 7.22 -2.39 -0.02 1.08 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 2.11 8.07 -2.39 -0.02 2.09 16 29 H 0.11 1.72 6.44 -2.39 -0.02 1.70 16 30 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 31 H 0.00 -0.27 7.42 -2.38 -0.02 -0.29 16 32 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.13 2.05 6.94 -2.39 -0.02 2.03 16 34 H 0.14 1.97 6.72 -2.39 -0.02 1.96 16 35 H 0.21 1.90 6.31 -2.91 -0.02 1.89 16 36 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -78.23 335.17 5.08 -73.15 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: 1.13 Total: -0.78 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.44 Total: 13.74 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -3.78 Total: -91.69 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.43 Total: -38.63 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -78.23 5.08 -73.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117130478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.895 kcal (2) G-P(sol) polarization free energy of solvation -78.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds