Wall clock time and date at job start Tue Mar 31 2020 10:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31746 * 123.76441 * 2 1 4 4 N 1.27571 * 118.27105 * 180.02562 * 3 2 1 5 5 S 1.56508 * 109.22644 * 0.02562 * 4 3 2 6 6 C 1.35346 * 123.77028 * 180.02562 * 2 1 3 7 7 C 1.50702 * 127.92020 * 0.23867 * 6 2 1 8 8 N 1.46901 * 109.47281 * 89.70495 * 7 6 2 9 9 C 1.46899 * 110.99889 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46911 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47214 * 180.02562 * 10 9 8 12 12 C 1.34782 * 120.00287 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99843 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.46773 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00010 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99724 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00054 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99765 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47204 * 90.00100 * 20 18 16 22 22 H 1.48502 * 109.47099 * 209.99881 * 20 18 16 23 23 H 1.48497 * 109.47375 * 329.99832 * 20 18 16 24 24 H 1.08997 * 109.46820 * 269.97187 * 1 2 3 25 25 H 1.08998 * 109.47135 * 29.97367 * 1 2 3 26 26 H 1.09002 * 109.46588 * 149.97453 * 1 2 3 27 27 H 1.09003 * 109.46558 * 209.70395 * 7 6 2 28 28 H 1.09004 * 109.47153 * 329.70026 * 7 6 2 29 29 H 1.00905 * 110.99585 * 303.95414 * 8 7 6 30 30 H 1.09002 * 109.47097 * 299.99837 * 9 8 7 31 31 H 1.09001 * 109.46746 * 59.99807 * 9 8 7 32 32 H 1.09002 * 109.47253 * 299.99920 * 10 9 8 33 33 H 1.08998 * 109.47329 * 59.99869 * 10 9 8 34 34 H 0.97005 * 119.99908 * 359.97438 * 11 10 9 35 35 H 1.08997 * 109.47408 * 299.99457 * 14 12 11 36 36 H 1.08994 * 109.47255 * 60.00302 * 14 12 11 37 37 H 0.96996 * 120.00258 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 -0.0005 5 16 3.8806 -0.5472 -0.0017 6 6 2.2594 -1.1251 -0.0005 7 6 1.7859 -2.5558 -0.0061 8 7 1.6301 -3.0147 -1.3929 9 6 1.1693 -4.4088 -1.4374 10 6 1.0186 -4.8497 -2.8947 11 7 0.5585 -6.2398 -2.9393 12 6 0.3549 -6.8447 -4.1264 13 8 0.5522 -6.2379 -5.1578 14 6 -0.1179 -8.2749 -4.1721 15 16 -0.2949 -8.7969 -5.8961 16 6 -0.8430 -10.4546 -5.6591 17 1 -0.9689 -10.8440 -4.6596 18 6 -1.1128 -11.2600 -6.7569 19 7 -0.9598 -10.7853 -7.9750 20 14 -1.6931 -13.0177 -6.5055 21 1 -3.1762 -13.0440 -6.4346 22 1 -1.2370 -13.8570 -7.6426 23 1 -1.1275 -13.5495 -5.2397 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3632 -0.8898 -0.5143 27 1 2.5176 -3.1825 0.5040 28 1 0.8276 -2.6234 0.5089 29 1 1.0055 -2.4104 -1.9056 30 1 1.8970 -5.0481 -0.9375 31 1 0.2069 -4.4896 -0.9323 32 1 0.2907 -4.2103 -3.3943 33 1 1.9808 -4.7687 -3.4003 34 1 0.4010 -6.7253 -2.1143 35 1 0.6097 -8.9142 -3.6723 36 1 -1.0803 -8.3557 -3.6670 37 1 -1.1480 -11.3482 -8.7421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:30 Heat of formation + Delta-G solvation = 28.102784 kcal Electronic energy + Delta-G solvation = -20000.774055 eV Core-core repulsion = 16645.781915 eV Total energy + Delta-G solvation = -3354.992140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36090 -39.26788 -37.40973 -34.87710 -33.44695 -32.45004 -30.74789 -29.31093 -27.65835 -26.89235 -25.50013 -24.44738 -22.51398 -20.74064 -20.41805 -19.13810 -17.90312 -16.76047 -16.55150 -16.19350 -16.15897 -15.66016 -15.23248 -14.82845 -14.70732 -14.31794 -14.00065 -13.82743 -13.54373 -13.33694 -13.19030 -13.07219 -12.59980 -12.53318 -12.28502 -11.95378 -11.75789 -11.52996 -11.08254 -11.04694 -10.78541 -10.49278 -10.14183 -10.02351 -9.84074 -9.47288 -9.11142 -9.09347 -8.96091 -8.26208 -6.52581 -6.23705 -3.94594 -0.22915 0.68537 1.30136 1.74019 2.90177 3.05224 3.20625 3.23726 3.28476 3.49234 3.61803 3.94119 4.11015 4.18249 4.18673 4.51528 4.70644 4.77077 4.83524 4.97694 4.99945 5.09029 5.11458 5.13709 5.14465 5.50253 5.56090 5.66148 5.79429 5.85931 6.09982 6.25191 6.52300 6.69151 7.34014 7.57270 7.62842 8.32976 8.55877 9.21547 10.83704 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.044377 B = 0.001709 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.812762 B =16380.145324 C =16424.164755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.028 3.972 3 N -0.242 5.242 4 N -0.292 5.292 5 S 0.451 5.549 6 C -0.262 4.262 7 C 0.144 3.856 8 N -0.682 5.682 9 C 0.050 3.950 10 C 0.122 3.878 11 N -0.740 5.740 12 C 0.532 3.468 13 O -0.515 6.515 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.349 0.651 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 17.626 21.740 28.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 N -0.108 5.108 4 N -0.271 5.271 5 S 0.587 5.413 6 C -0.400 4.400 7 C 0.013 3.987 8 N -0.315 5.315 9 C -0.079 4.079 10 C -0.002 4.002 11 N -0.395 5.395 12 C 0.318 3.682 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.167 0.833 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.771 19.575 19.736 28.863 hybrid contribution -3.001 -2.480 1.993 4.373 sum 4.770 17.095 21.729 28.056 Atomic orbital electron populations 1.20300 0.85102 1.04111 1.03654 1.22286 1.00258 0.86764 1.02518 1.71240 0.96810 1.27703 1.15093 1.78817 1.10432 1.15492 1.22386 1.81537 1.08875 1.00711 1.50136 1.26871 0.99900 1.01699 1.11567 1.20120 1.00861 0.87008 0.90728 1.60359 1.55594 1.03361 1.12210 1.22126 0.99432 0.89364 0.97027 1.21115 1.00980 0.82860 0.95279 1.45887 1.71201 1.13533 1.08877 1.20306 0.76576 0.88407 0.82869 1.90715 1.49348 1.65907 1.32909 1.23526 1.03793 0.94503 1.08564 1.85424 1.87615 1.13772 0.96553 1.22864 1.52320 0.97762 0.95499 0.90912 1.24997 0.95028 0.99139 0.94442 1.70013 1.45632 1.36791 0.97797 0.86163 0.78926 0.82367 0.78005 1.20279 1.20735 1.19702 0.89893 0.89678 0.90370 0.88727 0.92208 0.83266 0.89808 0.94017 0.91733 0.90558 0.76869 0.89161 0.89215 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.02 36.01 0.36 0.02 16 2 C 0.03 0.21 6.89 -83.66 -0.58 -0.36 16 3 N -0.24 -2.53 11.68 32.45 0.38 -2.16 16 4 N -0.29 -3.02 12.54 60.35 0.76 -2.26 16 5 S 0.45 3.13 23.40 -107.50 -2.52 0.62 16 6 C -0.26 -1.68 6.18 -35.34 -0.22 -1.90 16 7 C 0.14 0.67 5.79 -4.97 -0.03 0.64 16 8 N -0.68 -4.10 6.49 -115.05 -0.75 -4.85 16 9 C 0.05 0.31 5.80 -3.83 -0.02 0.28 16 10 C 0.12 1.24 5.93 -4.04 -0.02 1.21 16 11 N -0.74 -8.84 5.56 -60.30 -0.33 -9.17 16 12 C 0.53 9.50 7.85 -10.98 -0.09 9.42 16 13 O -0.52 -11.46 15.86 5.56 0.09 -11.37 16 14 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 20 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.26 7.67 -51.93 -0.40 -0.14 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.20 7.77 -51.93 -0.40 -0.20 16 29 H 0.35 2.05 8.72 -39.29 -0.34 1.71 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.40 3.45 8.47 -40.82 -0.35 3.10 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 36 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -36.07 351.84 -8.59 -44.66 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.84 Total: -1.62 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.18 Total: -6.24 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.79 Total: -43.63 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -4.73 Total: -3.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.07 -8.59 -44.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.758 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds