Wall clock time and date at job start Tue Mar 31 2020 10:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31746 * 123.76441 * 2 1 4 4 N 1.27571 * 118.27105 * 180.02562 * 3 2 1 5 5 S 1.56508 * 109.22644 * 0.02562 * 4 3 2 6 6 C 1.35346 * 123.77028 * 180.02562 * 2 1 3 7 7 C 1.50702 * 127.92020 * 0.23867 * 6 2 1 8 8 N 1.46901 * 109.47281 * 89.70495 * 7 6 2 9 9 C 1.46899 * 110.99889 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46911 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47214 * 180.02562 * 10 9 8 12 12 C 1.34782 * 120.00287 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99843 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.46773 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00010 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99724 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00054 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99765 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47204 * 90.00100 * 20 18 16 22 22 H 1.48502 * 109.47099 * 209.99881 * 20 18 16 23 23 H 1.48497 * 109.47375 * 329.99832 * 20 18 16 24 24 H 1.08997 * 109.46820 * 269.97187 * 1 2 3 25 25 H 1.08998 * 109.47135 * 29.97367 * 1 2 3 26 26 H 1.09002 * 109.46588 * 149.97453 * 1 2 3 27 27 H 1.09003 * 109.46558 * 209.70395 * 7 6 2 28 28 H 1.09004 * 109.47153 * 329.70026 * 7 6 2 29 29 H 1.00905 * 110.99585 * 303.95414 * 8 7 6 30 30 H 1.09002 * 109.47097 * 299.99837 * 9 8 7 31 31 H 1.09001 * 109.46746 * 59.99807 * 9 8 7 32 32 H 1.09002 * 109.47253 * 299.99920 * 10 9 8 33 33 H 1.08998 * 109.47329 * 59.99869 * 10 9 8 34 34 H 0.97005 * 119.99908 * 359.97438 * 11 10 9 35 35 H 1.08997 * 109.47408 * 299.99457 * 14 12 11 36 36 H 1.08994 * 109.47255 * 60.00302 * 14 12 11 37 37 H 0.96996 * 120.00258 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 -0.0005 5 16 3.8806 -0.5472 -0.0017 6 6 2.2594 -1.1251 -0.0005 7 6 1.7859 -2.5558 -0.0061 8 7 1.6301 -3.0147 -1.3929 9 6 1.1693 -4.4088 -1.4374 10 6 1.0186 -4.8497 -2.8947 11 7 0.5585 -6.2398 -2.9393 12 6 0.3549 -6.8447 -4.1264 13 8 0.5522 -6.2379 -5.1578 14 6 -0.1179 -8.2749 -4.1721 15 16 -0.2949 -8.7969 -5.8961 16 6 -0.8430 -10.4546 -5.6591 17 1 -0.9689 -10.8440 -4.6596 18 6 -1.1128 -11.2600 -6.7569 19 7 -0.9598 -10.7853 -7.9750 20 14 -1.6931 -13.0177 -6.5055 21 1 -3.1762 -13.0440 -6.4346 22 1 -1.2370 -13.8570 -7.6426 23 1 -1.1275 -13.5495 -5.2397 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3632 -0.8898 -0.5143 27 1 2.5176 -3.1825 0.5040 28 1 0.8276 -2.6234 0.5089 29 1 1.0055 -2.4104 -1.9056 30 1 1.8970 -5.0481 -0.9375 31 1 0.2069 -4.4896 -0.9323 32 1 0.2907 -4.2103 -3.3943 33 1 1.9808 -4.7687 -3.4003 34 1 0.4010 -6.7253 -2.1143 35 1 0.6097 -8.9142 -3.6723 36 1 -1.0803 -8.3557 -3.6670 37 1 -1.1480 -11.3482 -8.7421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:30 Heat of formation + Delta-G solvation = -1.055476 kcal Electronic energy + Delta-G solvation = -20002.038452 eV Core-core repulsion = 16645.781915 eV Total energy + Delta-G solvation = -3356.256537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94513 -40.59413 -38.01037 -35.83564 -34.57060 -34.13864 -31.73906 -30.26762 -28.32700 -27.74285 -27.47178 -24.99954 -23.16034 -21.77676 -21.25921 -19.83309 -19.65218 -17.85626 -17.45903 -17.05444 -16.93861 -16.86415 -16.46926 -16.17203 -15.91589 -15.15304 -15.08422 -14.69032 -14.57504 -14.28396 -13.89926 -13.81196 -13.70822 -13.37912 -13.14955 -13.04914 -12.88097 -12.72709 -12.57712 -12.42802 -12.15582 -11.71536 -11.12933 -11.08311 -10.99032 -10.67864 -10.56932 -10.25179 -10.10650 -9.51090 -8.65210 -8.33240 -6.11259 -0.79874 0.18154 0.73026 1.16315 1.28814 1.43826 1.48870 1.58808 1.63857 2.22471 2.29574 3.01022 3.08137 3.24913 3.38980 3.69188 3.70985 3.88939 4.07910 4.16084 4.34311 4.36572 4.50102 4.54330 4.54626 4.66033 4.69523 4.75723 4.95591 4.97739 5.16586 5.42674 5.43684 5.83727 6.21306 6.24204 6.53701 6.75971 7.08176 7.28057 8.75901 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.044377 B = 0.001709 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.812762 B =16380.145324 C =16424.164755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.018 3.982 3 N -0.278 5.278 4 N -0.338 5.338 5 S 0.483 5.517 6 C -0.254 4.254 7 C 0.146 3.854 8 N -0.695 5.695 9 C 0.065 3.935 10 C 0.122 3.878 11 N -0.710 5.710 12 C 0.533 3.467 13 O -0.568 6.568 14 C -0.129 4.129 15 S -0.156 6.156 16 C -0.545 4.545 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.257 1.257 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.349 0.651 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.419 0.581 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.462 16.050 24.637 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 N -0.144 5.144 4 N -0.317 5.317 5 S 0.619 5.381 6 C -0.392 4.392 7 C 0.015 3.985 8 N -0.328 5.328 9 C -0.065 4.065 10 C -0.003 4.003 11 N -0.365 5.365 12 C 0.319 3.681 13 O -0.446 6.446 14 C -0.280 4.280 15 S 0.071 5.929 16 C -0.693 4.693 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.181 1.181 24 H 0.114 0.886 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.167 0.833 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.256 0.744 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.084 18.030 22.714 29.853 hybrid contribution -2.734 -1.932 1.181 3.550 sum 4.350 16.097 23.895 29.138 Atomic orbital electron populations 1.20428 0.83271 1.04724 1.04701 1.22720 1.01448 0.86507 1.02176 1.71247 0.97195 1.29575 1.16336 1.78617 1.10741 1.17915 1.24431 1.81311 1.08987 0.98995 1.48759 1.27166 0.99366 1.02461 1.10254 1.20261 1.02383 0.85702 0.90128 1.60311 1.55958 1.03334 1.13199 1.21978 1.01118 0.89519 0.93853 1.21215 0.99518 0.81269 0.98255 1.45561 1.68847 1.14238 1.07811 1.20065 0.76494 0.87779 0.83792 1.90705 1.52019 1.66766 1.35119 1.23367 1.05778 0.95914 1.02933 1.85629 1.88044 1.14905 1.04348 1.23212 1.52058 0.97826 0.96184 0.89733 1.26140 0.94939 1.04229 0.93973 1.70185 1.47002 1.38741 0.98908 0.84948 0.78596 0.75966 0.78431 1.19339 1.20471 1.18070 0.88557 0.90262 0.88562 0.87250 0.89949 0.83259 0.88420 0.91782 0.92644 0.92509 0.74378 0.87030 0.86959 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.02 71.24 0.71 0.17 16 2 C 0.02 0.26 6.89 41.90 0.29 0.55 16 3 N -0.28 -5.87 11.68 -51.24 -0.60 -6.47 16 4 N -0.34 -7.10 12.54 37.02 0.46 -6.64 16 5 S 0.48 6.29 23.40 -56.49 -1.32 4.97 16 6 C -0.25 -2.75 6.18 25.02 0.15 -2.60 16 7 C 0.15 0.82 5.79 85.56 0.50 1.31 16 8 N -0.69 -6.17 6.49 -517.92 -3.36 -9.53 16 9 C 0.06 0.54 5.80 86.30 0.50 1.04 16 10 C 0.12 2.20 5.93 86.38 0.51 2.71 16 11 N -0.71 -15.02 5.56 -463.07 -2.57 -17.59 16 12 C 0.53 18.41 7.85 87.66 0.69 19.10 16 13 O -0.57 -25.63 15.86 -3.02 -0.05 -25.68 16 14 C -0.13 -4.80 6.16 71.24 0.44 -4.37 16 15 S -0.16 -8.53 20.57 -56.49 -1.16 -9.69 16 16 C -0.54 -30.51 9.50 67.95 0.65 -29.87 16 17 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 18 C 0.01 0.67 5.49 84.86 0.47 1.13 16 19 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 20 Si 1.00 42.83 29.55 68.60 2.03 44.85 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 24 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.37 7.67 -2.39 -0.02 0.35 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.08 0.16 7.77 -2.38 -0.02 0.15 16 29 H 0.35 3.19 8.72 -89.69 -0.78 2.41 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.42 5.48 8.47 -92.70 -0.79 4.70 16 35 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 36 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -82.39 351.84 -1.84 -84.22 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -0.45 Total: 7.67 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 4.90 Total: -10.82 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -5.78 Total: -95.53 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.48 Total: -4.72 kcal Total: -82.39 -1.84 -84.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.169 kcal (2) G-P(sol) polarization free energy of solvation -82.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds