Wall clock time and date at job start Tue Mar 31 2020 11:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33391 * 125.20417 * 2 1 4 4 C 1.38430 * 114.92030 * 180.20479 * 3 2 1 5 5 C 1.50697 * 122.53697 * 179.76073 * 4 3 2 6 6 O 1.45197 * 109.47237 * 269.73584 * 5 4 3 7 7 C 1.34231 * 117.00166 * 179.97438 * 6 5 4 8 8 O 1.20831 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00024 * 180.02562 * 7 6 5 10 10 H 1.08999 * 109.47258 * 322.69413 * 9 7 6 11 11 C 1.50694 * 109.46939 * 82.69642 * 9 7 6 12 12 H 1.08001 * 120.00338 * 54.78941 * 11 9 7 13 13 C 1.37882 * 119.99725 * 234.78591 * 11 9 7 14 14 N 1.31515 * 119.99511 * 176.05855 * 13 11 9 15 15 Si 1.86800 * 120.00055 * 356.05376 * 13 11 9 16 16 H 1.48495 * 109.46875 * 83.80432 * 15 13 11 17 17 H 1.48508 * 109.46855 * 203.80566 * 15 13 11 18 18 H 1.48503 * 109.46958 * 323.79900 * 15 13 11 19 19 C 1.50703 * 109.47028 * 202.69512 * 9 7 6 20 20 C 1.38239 * 119.99935 * 111.86829 * 19 9 7 21 21 C 1.38234 * 120.00006 * 180.02562 * 20 19 9 22 22 C 1.38234 * 119.99977 * 359.95644 * 21 20 19 23 23 C 1.38236 * 120.00024 * 359.97438 * 22 21 20 24 24 C 1.38228 * 119.99897 * 291.84998 * 19 9 7 25 25 C 1.33385 * 114.92138 * 359.49594 * 4 3 2 26 26 S 1.75884 * 109.59368 * 0.26502 * 25 4 3 27 27 H 1.09002 * 109.47121 * 180.28675 * 1 2 3 28 28 H 1.09001 * 109.47438 * 300.28487 * 1 2 3 29 29 H 1.09002 * 109.47404 * 60.28606 * 1 2 3 30 30 H 1.08001 * 122.54111 * 359.97187 * 3 2 1 31 31 H 1.09006 * 109.47143 * 149.73863 * 5 4 3 32 32 H 1.09002 * 109.47311 * 29.74335 * 5 4 3 33 33 H 0.97002 * 119.99634 * 180.02562 * 14 13 11 34 34 H 1.08003 * 119.99502 * 359.97438 * 20 19 9 35 35 H 1.07995 * 119.99992 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.99902 * 179.72507 * 22 21 20 37 37 H 1.07998 * 119.99983 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.00466 * 359.97438 * 24 19 9 39 39 H 1.07997 * 125.20464 * 180.29198 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 -0.0045 5 6 4.6623 1.9482 -0.0105 6 8 4.9909 2.2961 -1.3813 7 6 5.8949 3.2716 -1.5625 8 8 6.3955 3.8164 -0.6072 9 6 6.2856 3.6873 -2.9574 10 1 6.3234 2.8086 -3.6013 11 6 5.2683 4.6605 -3.4949 12 1 5.0315 5.5560 -2.9396 13 6 4.6399 4.4077 -4.6959 14 7 3.6967 5.2164 -5.1274 15 14 5.1282 2.9169 -5.7100 16 1 4.4026 1.7206 -5.2124 17 1 4.7787 3.1510 -7.1343 18 1 6.5915 2.6941 -5.5896 19 6 7.6413 4.3447 -2.9245 20 6 8.7267 3.7200 -3.5098 21 6 9.9703 4.3227 -3.4792 22 6 10.1284 5.5505 -2.8641 23 6 9.0427 6.1758 -2.2801 24 6 7.7993 5.5724 -2.3095 25 6 3.9751 -0.4477 0.0025 26 16 2.5209 -1.4371 0.0079 27 1 -0.3633 -1.0277 0.0051 28 1 -0.3634 0.5182 0.8874 29 1 -0.3634 0.5094 -0.8925 30 1 1.8669 2.0895 -0.0004 31 1 5.5622 1.6124 0.5048 32 1 4.2566 2.8222 0.4990 33 1 3.2543 5.0383 -5.9721 34 1 8.6031 2.7606 -3.9903 35 1 10.8184 3.8345 -3.9361 36 1 11.1009 6.0193 -2.8363 37 1 9.1663 7.1349 -1.7991 38 1 6.9511 6.0609 -1.8528 39 1 4.9862 -0.8271 0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129419556.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:13 Heat of formation + Delta-G solvation = -35.562055 kcal Electronic energy + Delta-G solvation = -23159.243757 eV Core-core repulsion = 19737.294543 eV Total energy + Delta-G solvation = -3421.949214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.88290 -38.58456 -37.94783 -35.55058 -33.73282 -32.36817 -31.63015 -30.21354 -28.34658 -27.29707 -26.59130 -23.81575 -22.00276 -21.87366 -21.22182 -19.56130 -18.96595 -17.35711 -17.08803 -16.84182 -16.23183 -15.77110 -15.30103 -14.70904 -14.63417 -14.28718 -13.98339 -13.63063 -13.31428 -12.95783 -12.90933 -12.78122 -12.68511 -12.53045 -12.10515 -12.09504 -11.97612 -11.76927 -11.41784 -11.16210 -11.02553 -10.77587 -10.55102 -10.25086 -10.05035 -10.01087 -9.70130 -9.37467 -8.81945 -8.58651 -8.42210 -8.21891 -7.94978 -6.34995 -4.40022 0.95244 1.59583 1.91400 2.03301 2.12000 2.54549 3.16190 3.22012 3.25160 3.27776 3.77804 4.21162 4.55259 4.72973 4.99422 5.02842 5.16676 5.29390 5.40589 5.43652 5.48733 5.51994 5.54951 5.66010 5.70542 5.82570 5.89071 6.06340 6.12071 6.13068 6.26324 6.33773 6.38684 6.51144 6.64353 6.77855 7.08976 7.14453 7.17125 7.24075 7.49997 7.71254 8.16549 8.61847 8.75076 9.21895 10.75484 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003973 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.888778 B = 7046.005899 C = 8004.470850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.181 4.181 3 C -0.121 4.121 4 C -0.095 4.095 5 C 0.123 3.877 6 O -0.347 6.347 7 C 0.475 3.525 8 O -0.531 6.531 9 C 0.059 3.941 10 H 0.073 0.927 11 C -0.510 4.510 12 H 0.086 0.914 13 C 0.088 3.912 14 N -0.875 5.875 15 Si 0.870 3.130 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.260 1.260 19 C -0.039 4.039 20 C -0.130 4.130 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.070 4.070 25 C -0.194 4.194 26 S 0.090 5.910 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.271 0.729 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -10.192 8.131 13.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 C -0.151 4.151 4 C -0.108 4.108 5 C 0.046 3.954 6 O -0.264 6.264 7 C 0.320 3.680 8 O -0.421 6.421 9 C 0.039 3.961 10 H 0.091 0.909 11 C -0.546 4.546 12 H 0.104 0.896 13 C -0.118 4.118 14 N -0.510 5.510 15 Si 0.696 3.304 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.185 1.185 19 C -0.040 4.040 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.088 4.088 25 C -0.329 4.329 26 S 0.354 5.646 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.081 -11.578 8.289 14.240 hybrid contribution 0.478 0.858 -0.570 1.135 sum 0.397 -10.720 7.719 13.216 Atomic orbital electron populations 1.20318 0.87722 1.02640 1.03204 1.24403 0.99945 0.95348 1.10093 1.20003 0.92153 0.99854 1.03048 1.18627 0.94282 0.93676 1.04186 1.21326 0.95914 0.95261 0.82891 1.86681 1.57720 1.52663 1.29365 1.25063 0.74246 0.74843 0.93828 1.90534 1.53946 1.53700 1.43875 1.18047 0.92428 0.97837 0.87785 0.90943 1.20479 1.20818 1.06625 1.06690 0.89640 1.25037 0.93478 0.96280 0.97001 1.69853 1.22575 1.37223 1.21328 0.86913 0.80094 0.83542 0.79815 1.19028 1.20818 1.18466 1.19920 0.93672 0.94968 0.95391 1.21023 0.92605 0.99910 1.01237 1.20900 0.96787 0.96129 1.01019 1.20917 0.98201 0.96086 1.00450 1.21066 0.93276 0.99744 1.00782 1.20956 0.96673 0.94411 0.96731 1.25475 1.02011 0.96046 1.09409 1.84065 0.96891 1.09915 1.73731 0.91625 0.90570 0.90319 0.83837 0.90981 0.90557 0.91857 0.86939 0.87034 0.87160 0.86907 0.86024 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.38 36.00 0.37 -0.38 16 2 C -0.18 -2.27 6.51 -36.01 -0.23 -2.50 16 3 C -0.12 -1.74 9.85 -41.20 -0.41 -2.15 16 4 C -0.10 -1.45 5.44 -106.25 -0.58 -2.03 16 5 C 0.12 2.09 5.71 36.00 0.21 2.30 16 6 O -0.35 -7.39 10.20 -39.26 -0.40 -7.79 16 7 C 0.48 10.89 7.06 36.01 0.25 11.14 16 8 O -0.53 -12.48 15.01 -18.75 -0.28 -12.76 16 9 C 0.06 1.40 2.33 -94.08 -0.22 1.18 16 10 H 0.07 1.67 4.56 -51.93 -0.24 1.44 16 11 C -0.51 -13.72 8.23 -34.44 -0.28 -14.00 16 12 H 0.09 2.50 7.67 -52.49 -0.40 2.10 16 13 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 14 N -0.88 -25.20 13.96 55.43 0.77 -24.43 16 15 Si 0.87 20.36 26.93 -169.99 -4.58 15.78 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.26 -5.75 6.81 56.52 0.38 -5.37 16 19 C -0.04 -0.86 4.52 -104.62 -0.47 -1.33 16 20 C -0.13 -2.54 9.67 -39.58 -0.38 -2.92 16 21 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 22 C -0.14 -2.30 10.05 -39.58 -0.40 -2.69 16 23 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 24 C -0.07 -1.49 8.06 -39.58 -0.32 -1.81 16 25 C -0.19 -2.59 10.98 29.04 0.32 -2.27 16 26 S 0.09 1.06 23.33 -107.50 -2.51 -1.45 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.07 1.13 8.11 -51.93 -0.42 0.70 16 32 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.11 2.03 7.96 -52.48 -0.42 1.61 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 2.72 7.44 -52.48 -0.39 2.33 16 39 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -30.46 351.70 -9.55 -40.01 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.83 Total: 5.89 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.03 Total: -20.55 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.77 Total: -24.43 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.68 Total: -20.55 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.58 Total: 15.78 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.46 -9.55 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129419556.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.447 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds