Wall clock time and date at job start Tue Mar 31 2020 11:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33391 * 125.20417 * 2 1 4 4 C 1.38430 * 114.92030 * 180.20479 * 3 2 1 5 5 C 1.50697 * 122.53697 * 179.76073 * 4 3 2 6 6 O 1.45197 * 109.47237 * 269.73584 * 5 4 3 7 7 C 1.34231 * 117.00166 * 179.97438 * 6 5 4 8 8 O 1.20831 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00024 * 180.02562 * 7 6 5 10 10 H 1.08999 * 109.47258 * 322.69413 * 9 7 6 11 11 C 1.50694 * 109.46939 * 82.69642 * 9 7 6 12 12 H 1.08001 * 120.00338 * 54.78941 * 11 9 7 13 13 C 1.37882 * 119.99725 * 234.78591 * 11 9 7 14 14 N 1.31515 * 119.99511 * 176.05855 * 13 11 9 15 15 Si 1.86800 * 120.00055 * 356.05376 * 13 11 9 16 16 H 1.48495 * 109.46875 * 83.80432 * 15 13 11 17 17 H 1.48508 * 109.46855 * 203.80566 * 15 13 11 18 18 H 1.48503 * 109.46958 * 323.79900 * 15 13 11 19 19 C 1.50703 * 109.47028 * 202.69512 * 9 7 6 20 20 C 1.38239 * 119.99935 * 111.86829 * 19 9 7 21 21 C 1.38234 * 120.00006 * 180.02562 * 20 19 9 22 22 C 1.38234 * 119.99977 * 359.95644 * 21 20 19 23 23 C 1.38236 * 120.00024 * 359.97438 * 22 21 20 24 24 C 1.38228 * 119.99897 * 291.84998 * 19 9 7 25 25 C 1.33385 * 114.92138 * 359.49594 * 4 3 2 26 26 S 1.75884 * 109.59368 * 0.26502 * 25 4 3 27 27 H 1.09002 * 109.47121 * 180.28675 * 1 2 3 28 28 H 1.09001 * 109.47438 * 300.28487 * 1 2 3 29 29 H 1.09002 * 109.47404 * 60.28606 * 1 2 3 30 30 H 1.08001 * 122.54111 * 359.97187 * 3 2 1 31 31 H 1.09006 * 109.47143 * 149.73863 * 5 4 3 32 32 H 1.09002 * 109.47311 * 29.74335 * 5 4 3 33 33 H 0.97002 * 119.99634 * 180.02562 * 14 13 11 34 34 H 1.08003 * 119.99502 * 359.97438 * 20 19 9 35 35 H 1.07995 * 119.99992 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.99902 * 179.72507 * 22 21 20 37 37 H 1.07998 * 119.99983 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.00466 * 359.97438 * 24 19 9 39 39 H 1.07997 * 125.20464 * 180.29198 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 -0.0045 5 6 4.6623 1.9482 -0.0105 6 8 4.9909 2.2961 -1.3813 7 6 5.8949 3.2716 -1.5625 8 8 6.3955 3.8164 -0.6072 9 6 6.2856 3.6873 -2.9574 10 1 6.3234 2.8086 -3.6013 11 6 5.2683 4.6605 -3.4949 12 1 5.0315 5.5560 -2.9396 13 6 4.6399 4.4077 -4.6959 14 7 3.6967 5.2164 -5.1274 15 14 5.1282 2.9169 -5.7100 16 1 4.4026 1.7206 -5.2124 17 1 4.7787 3.1510 -7.1343 18 1 6.5915 2.6941 -5.5896 19 6 7.6413 4.3447 -2.9245 20 6 8.7267 3.7200 -3.5098 21 6 9.9703 4.3227 -3.4792 22 6 10.1284 5.5505 -2.8641 23 6 9.0427 6.1758 -2.2801 24 6 7.7993 5.5724 -2.3095 25 6 3.9751 -0.4477 0.0025 26 16 2.5209 -1.4371 0.0079 27 1 -0.3633 -1.0277 0.0051 28 1 -0.3634 0.5182 0.8874 29 1 -0.3634 0.5094 -0.8925 30 1 1.8669 2.0895 -0.0004 31 1 5.5622 1.6124 0.5048 32 1 4.2566 2.8222 0.4990 33 1 3.2543 5.0383 -5.9721 34 1 8.6031 2.7606 -3.9903 35 1 10.8184 3.8345 -3.9361 36 1 11.1009 6.0193 -2.8363 37 1 9.1663 7.1349 -1.7991 38 1 6.9511 6.0609 -1.8528 39 1 4.9862 -0.8271 0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129419556.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:12 Heat of formation + Delta-G solvation = -50.385150 kcal Electronic energy + Delta-G solvation = -23159.886534 eV Core-core repulsion = 19737.294543 eV Total energy + Delta-G solvation = -3422.591991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58283 -39.97516 -39.20928 -37.20107 -35.63843 -33.55756 -33.30253 -31.66186 -29.90113 -28.67221 -27.62130 -25.73529 -23.45438 -23.27799 -22.47783 -21.24731 -20.05983 -19.26638 -18.63077 -18.28319 -17.68494 -17.30319 -16.96146 -16.25647 -15.97312 -15.86308 -15.16608 -14.88845 -14.77119 -14.43943 -14.31021 -14.13255 -14.08221 -13.86051 -13.57223 -13.48699 -13.18133 -13.02016 -12.88914 -12.81849 -12.44538 -12.10503 -11.98585 -11.84518 -11.72785 -11.61561 -11.57511 -11.21673 -10.85295 -9.67719 -9.60883 -9.50164 -9.39425 -8.44102 -6.54713 -0.10083 0.55759 0.61285 0.65810 0.87970 1.28490 1.32397 1.37154 1.39651 1.45064 2.25660 2.28095 2.93587 3.10999 3.67380 3.88102 4.02527 4.08118 4.13043 4.16066 4.28993 4.29845 4.38726 4.39127 4.44912 4.50870 4.59178 4.72153 4.78817 4.85889 5.05543 5.10583 5.12294 5.26540 5.30020 5.32502 5.42196 5.49066 5.66905 5.71835 5.87937 6.10525 6.27033 6.48530 6.93192 7.10759 8.70530 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003973 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.888778 B = 7046.005899 C = 8004.470850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.182 4.182 3 C -0.152 4.152 4 C -0.120 4.120 5 C 0.121 3.879 6 O -0.359 6.359 7 C 0.475 3.525 8 O -0.543 6.543 9 C 0.059 3.941 10 H 0.079 0.921 11 C -0.513 4.513 12 H 0.039 0.961 13 C 0.036 3.964 14 N -0.924 5.924 15 Si 0.929 3.071 16 H -0.259 1.259 17 H -0.276 1.276 18 H -0.236 1.236 19 C -0.071 4.071 20 C -0.141 4.141 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.100 4.100 25 C -0.199 4.199 26 S 0.143 5.857 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.275 0.725 34 H 0.127 0.873 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 -12.819 7.730 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.299 4.299 3 C -0.181 4.181 4 C -0.133 4.133 5 C 0.045 3.955 6 O -0.276 6.276 7 C 0.321 3.679 8 O -0.434 6.434 9 C 0.040 3.960 10 H 0.097 0.903 11 C -0.550 4.550 12 H 0.057 0.943 13 C -0.166 4.166 14 N -0.561 5.561 15 Si 0.751 3.249 16 H -0.184 1.184 17 H -0.202 1.202 18 H -0.159 1.159 19 C -0.071 4.071 20 C -0.159 4.159 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.118 4.118 25 C -0.335 4.335 26 S 0.408 5.592 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.154 0.846 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.154 0.846 38 H 0.108 0.892 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.038 -14.214 7.910 16.394 hybrid contribution -0.180 1.679 -0.300 1.716 sum 1.857 -12.534 7.611 14.781 Atomic orbital electron populations 1.20452 0.85597 1.04107 1.03895 1.24854 1.01586 0.95358 1.08108 1.20059 0.92333 1.00398 1.05315 1.18564 0.94128 0.93818 1.06787 1.21541 0.97214 0.95957 0.80752 1.86636 1.56915 1.51900 1.32157 1.24842 0.74434 0.75086 0.93541 1.90505 1.54552 1.54143 1.44196 1.17998 0.92786 0.97206 0.88042 0.90264 1.20460 1.21971 1.05907 1.06661 0.94308 1.25884 0.93213 0.99411 0.98076 1.69983 1.24277 1.39617 1.22183 0.85984 0.81216 0.79622 0.78103 1.18375 1.20154 1.15903 1.19890 0.93710 0.95704 0.97800 1.21281 0.92930 1.00679 1.01056 1.21390 0.96840 0.96012 0.99729 1.21424 0.99249 0.95674 0.98213 1.21373 0.92429 1.00666 1.00662 1.20892 0.97424 0.95102 0.98431 1.25792 1.03921 0.95833 1.07926 1.83870 0.94987 1.08212 1.72168 0.89737 0.89184 0.90281 0.84643 0.89617 0.91331 0.91602 0.85503 0.82868 0.82841 0.84588 0.89243 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.38 71.23 0.74 -0.66 16 2 C -0.18 -4.35 6.51 24.59 0.16 -4.19 16 3 C -0.15 -4.44 9.85 21.22 0.21 -4.24 16 4 C -0.12 -3.70 5.44 -20.92 -0.11 -3.81 16 5 C 0.12 4.28 5.71 71.23 0.41 4.68 16 6 O -0.36 -15.82 10.20 -51.42 -0.52 -16.34 16 7 C 0.48 22.72 7.06 71.24 0.50 23.22 16 8 O -0.54 -26.74 15.01 21.95 0.33 -26.42 16 9 C 0.06 2.90 2.33 -13.03 -0.03 2.87 16 10 H 0.08 3.66 4.56 -2.39 -0.01 3.65 16 11 C -0.51 -29.29 8.23 25.60 0.21 -29.08 16 12 H 0.04 2.49 7.67 -2.91 -0.02 2.47 16 13 C 0.04 2.01 5.47 84.66 0.46 2.48 16 14 N -0.92 -55.73 13.96 21.45 0.30 -55.43 16 15 Si 0.93 42.04 26.93 68.60 1.85 43.89 16 16 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.24 -9.66 6.81 99.48 0.68 -8.99 16 19 C -0.07 -3.16 4.52 -19.87 -0.09 -3.25 16 20 C -0.14 -5.25 9.67 22.27 0.22 -5.04 16 21 C -0.12 -3.67 10.05 22.27 0.22 -3.44 16 22 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 23 C -0.13 -4.67 10.05 22.27 0.22 -4.45 16 24 C -0.10 -4.43 8.06 22.27 0.18 -4.25 16 25 C -0.20 -5.07 10.98 66.72 0.73 -4.34 16 26 S 0.14 3.05 23.33 -56.49 -1.32 1.73 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.09 2.73 8.11 -2.38 -0.02 2.71 16 32 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.13 4.23 7.96 -2.91 -0.02 4.21 16 35 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.09 4.39 7.44 -2.91 -0.02 4.37 16 39 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -70.17 351.70 5.92 -64.26 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 1.03 Total: 25.32 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 4.26 Total: -37.01 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.30 Total: -55.43 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.20 Total: -42.76 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.85 Total: 43.89 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.32 Total: 1.73 kcal Total: -70.17 5.92 -64.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129419556.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.872 kcal (2) G-P(sol) polarization free energy of solvation -70.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds