Wall clock time and date at job start Tue Mar 31 2020 10:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47353 * 2 1 4 4 C 1.53003 * 109.46994 * 120.00478 * 2 1 3 5 5 C 1.53004 * 109.46807 * 184.99940 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.34777 * 119.99828 * 204.72115 * 8 5 4 10 10 O 1.21723 * 120.00033 * 0.28033 * 9 8 5 11 11 C 1.46440 * 120.00268 * 180.27577 * 9 8 5 12 12 S 1.75835 * 125.45681 * 0.03202 * 11 9 8 13 13 C 1.70610 * 91.58312 * 179.97438 * 12 11 9 14 14 C 1.33778 * 111.00000 * 359.97438 * 13 12 11 15 15 C 1.36789 * 125.46349 * 179.71744 * 11 9 8 16 16 Cl 1.73595 * 123.37973 * 359.97438 * 15 11 9 17 17 N 1.46501 * 109.46844 * 239.99989 * 2 1 3 18 18 C 1.36940 * 120.00163 * 85.00323 * 17 2 1 19 19 H 1.07998 * 119.99655 * 359.97438 * 18 17 2 20 20 C 1.38811 * 120.00411 * 179.97438 * 18 17 2 21 21 N 1.31622 * 119.99577 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46864 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46976 * 119.99662 * 22 20 18 25 25 H 1.48494 * 109.47212 * 240.00076 * 22 20 18 26 26 H 1.09005 * 109.47051 * 299.99753 * 1 2 3 27 27 H 1.08994 * 109.47045 * 59.99719 * 1 2 3 28 28 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47316 * 65.00032 * 4 2 1 30 30 H 1.08998 * 109.46869 * 304.99501 * 4 2 1 31 31 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 32 32 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 33 33 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 34 34 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 35 35 H 1.07997 * 124.50238 * 179.97438 * 13 12 11 36 36 H 1.08002 * 122.44887 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99999 * 264.99873 * 17 2 1 38 38 H 0.97000 * 119.99942 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3868 7 6 4.0852 -1.4384 2.4924 8 7 3.9479 0.7893 1.4924 9 6 5.1633 1.2122 1.0917 10 8 5.9407 0.4298 0.5767 11 6 5.5486 2.6129 1.2758 12 16 4.5435 3.8605 2.0004 13 6 5.7620 5.0347 1.7833 14 6 6.8435 4.5019 1.2035 15 6 6.7503 3.1592 0.9172 16 17 8.0285 2.2504 0.1729 17 7 2.0183 -0.6906 -1.1962 18 6 2.1491 -0.0075 -2.3758 19 1 1.8919 1.0403 -2.4243 20 6 2.6122 -0.6617 -3.5091 21 7 2.9261 -1.9386 -3.4497 22 14 2.7900 0.2700 -5.1183 23 1 2.3752 1.6822 -4.9211 24 1 4.2069 0.2280 -5.5606 25 1 1.9298 -0.3593 -6.1523 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7516 -1.7716 1.2055 30 1 1.6054 -0.2618 2.1369 31 1 3.8001 -2.4821 2.3594 32 1 5.1715 -1.3619 2.5380 33 1 3.6546 -1.0595 3.4192 34 1 3.3285 1.4128 1.9028 35 1 5.6723 6.0707 2.0751 36 1 7.7265 5.0822 0.9801 37 1 2.2490 -1.6318 -1.1526 38 1 3.2494 -2.3959 -4.2417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134415459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:52 Heat of formation + Delta-G solvation = -3.862446 kcal Electronic energy + Delta-G solvation = -22223.332910 eV Core-core repulsion = 18832.618196 eV Total energy + Delta-G solvation = -3390.714714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.67661 -38.06491 -36.66002 -36.01700 -34.41534 -32.18130 -31.11976 -29.42951 -28.54883 -26.31264 -25.14090 -23.57903 -22.19907 -20.58696 -19.77897 -19.42245 -18.69797 -17.14072 -16.43689 -15.85489 -15.28826 -14.97953 -14.57192 -13.95533 -13.77436 -13.72364 -13.61269 -13.34803 -12.97537 -12.84576 -12.64201 -12.11895 -11.96648 -11.71003 -11.57424 -11.48161 -11.42549 -11.01998 -10.80403 -10.77239 -10.58013 -10.40555 -10.17166 -9.85239 -9.62221 -9.57292 -9.07524 -8.83751 -8.70245 -8.62590 -6.87298 -5.68416 -2.96126 0.27361 1.05181 1.52098 2.09496 2.46170 3.30196 3.42825 3.48879 3.54031 3.56530 4.65397 4.66926 4.88203 4.98298 5.16366 5.41345 5.46829 5.50949 5.65728 5.71358 5.72547 5.80940 5.90683 5.96447 6.03875 6.15337 6.30962 6.38424 6.46143 6.59258 6.72068 6.81266 6.93909 7.09991 7.72135 7.77580 8.46489 8.50086 9.61539 10.18552 10.52743 11.54434 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.005031 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.520480 B = 5564.663732 C = 6481.109199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.145 3.855 6 H 0.109 0.891 7 C -0.161 4.161 8 N -0.711 5.711 9 C 0.584 3.416 10 O -0.500 6.500 11 C -0.251 4.251 12 S 0.236 5.764 13 C -0.230 4.230 14 C -0.141 4.141 15 C 0.010 3.990 16 Cl -0.013 7.013 17 N -0.720 5.720 18 C -0.233 4.233 19 H 0.067 0.933 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.901 3.099 23 H -0.282 1.282 24 H -0.292 1.292 25 H -0.293 1.293 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.390 0.610 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.383 0.617 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 12.452 16.774 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.042 3.958 6 H 0.127 0.873 7 C -0.220 4.220 8 N -0.362 5.362 9 C 0.368 3.632 10 O -0.376 6.376 11 C -0.372 4.372 12 S 0.502 5.498 13 C -0.368 4.368 14 C -0.172 4.172 15 C -0.032 4.032 16 Cl 0.016 6.984 17 N -0.362 5.362 18 C -0.364 4.364 19 H 0.085 0.915 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.732 3.268 23 H -0.207 1.207 24 H -0.219 1.219 25 H -0.220 1.220 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.223 0.777 35 H 0.193 0.807 36 H 0.170 0.830 37 H 0.217 0.783 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.676 11.941 16.798 20.782 hybrid contribution 1.405 0.633 -1.485 2.141 sum 4.081 12.574 15.312 20.229 Atomic orbital electron populations 1.22455 0.99499 1.00818 0.99755 1.20226 0.91601 0.95521 0.86574 0.93717 1.22182 0.93591 1.02368 0.98864 1.21079 0.95225 0.79391 1.00117 0.87325 1.22189 1.01638 1.00217 0.97917 1.45823 1.15570 1.12025 1.62811 1.16678 0.82651 0.84880 0.78952 1.90918 1.50782 1.54241 1.41616 1.24724 0.99133 0.99827 1.13560 1.83039 1.15601 0.96514 1.54677 1.25144 0.98689 1.05509 1.07411 1.19763 1.01053 0.92953 1.03473 1.20359 0.90758 0.92451 0.99600 1.98413 1.47065 1.73515 1.79439 1.42395 1.77965 1.10550 1.05249 1.19184 1.36261 0.93660 0.87304 0.91504 1.24681 1.02210 0.95936 0.97922 1.69655 1.51013 1.08616 1.28632 0.86207 0.77349 0.78795 0.84409 1.20697 1.21903 1.21989 0.94727 0.92903 0.93507 0.90417 0.92042 0.91577 0.92403 0.93127 0.77696 0.80679 0.82955 0.78324 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.23 2.84 -67.93 -0.19 3.04 16 3 H 0.04 0.87 7.56 -51.93 -0.39 0.48 16 4 C -0.13 -1.99 4.29 -26.73 -0.11 -2.10 16 5 C 0.15 2.37 2.52 -67.93 -0.17 2.20 16 6 H 0.11 2.32 7.06 -51.93 -0.37 1.95 16 7 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16 8 N -0.71 -10.78 4.44 -55.19 -0.25 -11.03 16 9 C 0.58 10.21 7.74 -12.96 -0.10 10.11 16 10 O -0.50 -10.70 14.75 5.17 0.08 -10.63 16 11 C -0.25 -3.63 6.45 -36.81 -0.24 -3.87 16 12 S 0.24 2.29 22.15 -107.50 -2.38 -0.09 16 13 C -0.23 -1.99 10.92 29.17 0.32 -1.67 16 14 C -0.14 -1.49 10.06 -41.38 -0.42 -1.90 16 15 C 0.01 0.15 6.39 -40.34 -0.26 -0.11 16 16 Cl -0.01 -0.21 27.24 -51.86 -1.41 -1.62 16 17 N -0.72 -17.71 4.49 -53.42 -0.24 -17.95 16 18 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 22 Si 0.90 23.25 29.55 -169.99 -5.02 18.22 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.39 4.78 7.71 -40.82 -0.31 4.47 16 35 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 38 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -33.60 350.14 -9.10 -42.70 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.17 Total: 8.88 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.71 Total: -5.78 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.24 Total: -56.96 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.38 Total: -0.09 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.41 Total: -1.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.60 -9.10 -42.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134415459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.841 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds