Wall clock time and date at job start Tue Mar 31 2020 10:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47353 * 2 1 4 4 C 1.53003 * 109.46994 * 120.00478 * 2 1 3 5 5 C 1.53004 * 109.46807 * 184.99940 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.34777 * 119.99828 * 204.72115 * 8 5 4 10 10 O 1.21723 * 120.00033 * 0.28033 * 9 8 5 11 11 C 1.46440 * 120.00268 * 180.27577 * 9 8 5 12 12 S 1.75835 * 125.45681 * 0.03202 * 11 9 8 13 13 C 1.70610 * 91.58312 * 179.97438 * 12 11 9 14 14 C 1.33778 * 111.00000 * 359.97438 * 13 12 11 15 15 C 1.36789 * 125.46349 * 179.71744 * 11 9 8 16 16 Cl 1.73595 * 123.37973 * 359.97438 * 15 11 9 17 17 N 1.46501 * 109.46844 * 239.99989 * 2 1 3 18 18 C 1.36940 * 120.00163 * 85.00323 * 17 2 1 19 19 H 1.07998 * 119.99655 * 359.97438 * 18 17 2 20 20 C 1.38811 * 120.00411 * 179.97438 * 18 17 2 21 21 N 1.31622 * 119.99577 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46864 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46976 * 119.99662 * 22 20 18 25 25 H 1.48494 * 109.47212 * 240.00076 * 22 20 18 26 26 H 1.09005 * 109.47051 * 299.99753 * 1 2 3 27 27 H 1.08994 * 109.47045 * 59.99719 * 1 2 3 28 28 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47316 * 65.00032 * 4 2 1 30 30 H 1.08998 * 109.46869 * 304.99501 * 4 2 1 31 31 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 32 32 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 33 33 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 34 34 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 35 35 H 1.07997 * 124.50238 * 179.97438 * 13 12 11 36 36 H 1.08002 * 122.44887 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99999 * 264.99873 * 17 2 1 38 38 H 0.97000 * 119.99942 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3868 7 6 4.0852 -1.4384 2.4924 8 7 3.9479 0.7893 1.4924 9 6 5.1633 1.2122 1.0917 10 8 5.9407 0.4298 0.5767 11 6 5.5486 2.6129 1.2758 12 16 4.5435 3.8605 2.0004 13 6 5.7620 5.0347 1.7833 14 6 6.8435 4.5019 1.2035 15 6 6.7503 3.1592 0.9172 16 17 8.0285 2.2504 0.1729 17 7 2.0183 -0.6906 -1.1962 18 6 2.1491 -0.0075 -2.3758 19 1 1.8919 1.0403 -2.4243 20 6 2.6122 -0.6617 -3.5091 21 7 2.9261 -1.9386 -3.4497 22 14 2.7900 0.2700 -5.1183 23 1 2.3752 1.6822 -4.9211 24 1 4.2069 0.2280 -5.5606 25 1 1.9298 -0.3593 -6.1523 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7516 -1.7716 1.2055 30 1 1.6054 -0.2618 2.1369 31 1 3.8001 -2.4821 2.3594 32 1 5.1715 -1.3619 2.5380 33 1 3.6546 -1.0595 3.4192 34 1 3.3285 1.4128 1.9028 35 1 5.6723 6.0707 2.0751 36 1 7.7265 5.0822 0.9801 37 1 2.2490 -1.6318 -1.1526 38 1 3.2494 -2.3959 -4.2417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134415459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:51 Heat of formation + Delta-G solvation = -26.598845 kcal Electronic energy + Delta-G solvation = -22224.318834 eV Core-core repulsion = 18832.618196 eV Total energy + Delta-G solvation = -3391.700638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93737 -39.08942 -38.11852 -37.06973 -36.03866 -34.03452 -32.47469 -30.60258 -30.23241 -27.59222 -26.10798 -25.63695 -23.32301 -21.93972 -21.23293 -20.43606 -19.81157 -19.16690 -17.48988 -17.06920 -16.71793 -16.35713 -16.00386 -15.64328 -15.41298 -14.87134 -14.57779 -14.52999 -14.43829 -14.13955 -13.81072 -13.59746 -13.33992 -13.15460 -12.94149 -12.80025 -12.66369 -12.51812 -12.29171 -12.23644 -12.15142 -11.84866 -11.81695 -11.55518 -11.41534 -10.96767 -10.90750 -10.16570 -9.82908 -9.48567 -8.93644 -7.91775 -5.16497 -0.67176 0.14266 0.73013 1.20866 1.40717 1.43588 1.43976 1.51155 2.08577 2.21611 2.55985 3.43180 3.71558 3.85449 4.00576 4.03555 4.11567 4.20342 4.41089 4.55321 4.67125 4.69878 4.80107 4.84048 4.93108 4.94521 4.99884 5.05912 5.12375 5.24402 5.35725 5.42233 5.51707 5.62082 5.66259 6.31827 6.52544 7.24069 7.37621 8.18313 8.37481 9.32303 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.005031 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.520480 B = 5564.663732 C = 6481.109199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.148 3.852 6 H 0.049 0.951 7 C -0.151 4.151 8 N -0.700 5.700 9 C 0.576 3.424 10 O -0.557 6.557 11 C -0.304 4.304 12 S 0.305 5.695 13 C -0.203 4.203 14 C -0.159 4.159 15 C 0.000 4.000 16 Cl -0.044 7.044 17 N -0.731 5.731 18 C -0.221 4.221 19 H 0.070 0.930 20 C -0.079 4.079 21 N -0.969 5.969 22 Si 0.957 3.043 23 H -0.265 1.265 24 H -0.303 1.303 25 H -0.291 1.291 26 H 0.078 0.922 27 H 0.029 0.971 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.406 0.594 35 H 0.220 0.780 36 H 0.173 0.827 37 H 0.370 0.630 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 15.616 19.349 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.060 0.940 4 C -0.157 4.157 5 C 0.043 3.957 6 H 0.067 0.933 7 C -0.209 4.209 8 N -0.352 5.352 9 C 0.362 3.638 10 O -0.436 6.436 11 C -0.425 4.425 12 S 0.572 5.428 13 C -0.341 4.341 14 C -0.189 4.189 15 C -0.043 4.043 16 Cl -0.016 7.016 17 N -0.372 5.372 18 C -0.354 4.354 19 H 0.088 0.912 20 C -0.271 4.271 21 N -0.620 5.620 22 Si 0.788 3.212 23 H -0.190 1.190 24 H -0.231 1.231 25 H -0.218 1.218 26 H 0.097 0.903 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.242 0.758 35 H 0.237 0.763 36 H 0.190 0.810 37 H 0.202 0.798 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.695 15.169 19.434 24.663 hybrid contribution 1.921 -0.201 -2.137 2.881 sum 2.616 14.969 17.297 23.023 Atomic orbital electron populations 1.22298 0.97482 1.00927 1.00812 1.20541 0.92809 0.95210 0.86012 0.94024 1.22099 0.92426 1.02503 0.98644 1.20888 0.95883 0.80267 0.98617 0.93266 1.22084 1.00371 1.00331 0.98131 1.45693 1.15315 1.11930 1.62261 1.17193 0.82553 0.86021 0.78010 1.90878 1.52367 1.56204 1.44194 1.24652 1.01098 0.99825 1.16940 1.82722 1.13908 0.94057 1.52139 1.25729 0.97077 1.07116 1.04205 1.19912 1.02860 0.91482 1.04636 1.20790 0.90046 0.93756 0.99733 1.98394 1.48461 1.74588 1.80107 1.42610 1.78179 1.10103 1.06265 1.19524 1.33667 0.93748 0.88421 0.91227 1.25408 1.03684 0.96842 1.01137 1.69803 1.53236 1.10092 1.28905 0.85289 0.76416 0.78525 0.80993 1.18965 1.23141 1.21813 0.90294 0.95162 0.93893 0.90253 0.87316 0.90961 0.94479 0.89777 0.75771 0.76341 0.80986 0.79826 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 9.49 71.98 0.68 -4.29 16 2 C 0.16 5.90 2.84 44.99 0.13 6.03 16 3 H 0.04 1.54 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -3.32 4.29 30.60 0.13 -3.19 16 5 C 0.15 4.80 2.52 44.99 0.11 4.92 16 6 H 0.05 2.23 7.06 -2.39 -0.02 2.21 16 7 C -0.15 -4.03 9.48 71.98 0.68 -3.35 16 8 N -0.70 -20.80 4.44 -446.72 -1.99 -22.78 16 9 C 0.58 20.65 7.74 86.38 0.67 21.32 16 10 O -0.56 -25.52 14.75 -4.42 -0.07 -25.59 16 11 C -0.30 -8.62 6.45 24.07 0.16 -8.46 16 12 S 0.31 4.84 22.15 -56.49 -1.25 3.59 16 13 C -0.20 -2.61 10.92 66.81 0.73 -1.88 16 14 C -0.16 -2.98 10.06 21.11 0.21 -2.76 16 15 C 0.00 0.01 6.39 21.78 0.14 0.15 16 16 Cl -0.04 -1.46 27.24 -2.72 -0.07 -1.54 16 17 N -0.73 -36.57 4.49 -322.94 -1.45 -38.02 16 18 C -0.22 -12.56 9.93 84.03 0.83 -11.73 16 19 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 21 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 22 Si 0.96 48.88 29.55 68.60 2.03 50.91 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 25 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 26 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.41 8.96 7.71 -92.71 -0.71 8.25 16 35 H 0.22 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.37 20.25 7.80 -92.71 -0.72 19.52 16 38 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -79.47 350.14 2.08 -77.39 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.35 Total: 25.38 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.94 Total: -7.52 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -3.15 Total: -122.63 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.07 Total: -25.59 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.25 Total: 3.59 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.54 kcal Total: -79.47 2.08 -77.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134415459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.790 kcal (2) G-P(sol) polarization free energy of solvation -79.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds