Wall clock time and date at job start Tue Mar 31 2020 10:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 H 1.09003 * 109.46772 * 54.99753 * 5 4 2 7 7 C 1.52997 * 109.47131 * 175.00107 * 5 4 2 8 8 N 1.46496 * 109.46972 * 295.00263 * 5 4 2 9 9 C 1.34774 * 120.00165 * 154.99647 * 8 5 4 10 10 O 1.21725 * 119.99831 * 359.97438 * 9 8 5 11 11 C 1.46442 * 120.00312 * 179.97438 * 9 8 5 12 12 S 1.75823 * 125.46198 * 0.02562 * 11 9 8 13 13 C 1.70611 * 91.58848 * 179.97438 * 12 11 9 14 14 C 1.33770 * 110.99517 * 0.02562 * 13 12 11 15 15 C 1.36790 * 125.46200 * 179.71854 * 11 9 8 16 16 Cl 1.73603 * 123.38242 * 0.02562 * 15 11 9 17 17 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 18 18 C 1.36939 * 119.99555 * 274.99680 * 17 2 1 19 19 H 1.07999 * 120.00498 * 0.02562 * 18 17 2 20 20 C 1.38813 * 119.99885 * 179.97438 * 18 17 2 21 21 N 1.31621 * 120.00371 * 179.97438 * 20 18 17 22 22 Si 1.86810 * 119.99869 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.46935 * 89.99729 * 22 20 18 24 24 H 1.48496 * 109.46829 * 209.99889 * 22 20 18 25 25 H 1.48498 * 109.46724 * 329.99773 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 30 30 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 31 31 H 1.08997 * 109.47170 * 60.00271 * 7 5 4 32 32 H 1.08997 * 109.46822 * 180.02562 * 7 5 4 33 33 H 1.09001 * 109.46769 * 299.99905 * 7 5 4 34 34 H 0.97000 * 120.00608 * 334.99964 * 8 5 4 35 35 H 1.07991 * 124.50041 * 179.97438 * 13 12 11 36 36 H 1.08003 * 122.45260 * 180.02562 * 14 13 12 37 37 H 0.96998 * 120.00364 * 94.99433 * 17 2 1 38 38 H 0.96993 * 120.00193 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4383 -2.4926 8 7 3.9479 0.7893 -1.4925 9 6 5.1611 1.2135 -1.0868 10 8 5.9384 0.4312 -0.5714 11 6 5.5443 2.6155 -1.2660 12 16 4.5388 3.8634 -1.9892 13 6 5.7541 5.0395 -1.7645 14 6 6.8349 4.5070 -1.1834 15 6 6.7397 3.1655 -0.8922 16 17 8.0113 2.2607 -0.1318 17 7 2.0184 -0.6907 1.1961 18 6 2.1493 -0.0075 2.3757 19 1 1.8920 1.0403 2.4244 20 6 2.6115 -0.6620 3.5092 21 7 2.7377 -0.0053 4.6429 22 14 3.0557 -2.4746 3.4253 23 1 4.4885 -2.6167 3.0620 24 1 2.8156 -3.1047 4.7483 25 1 2.2161 -3.1429 2.3989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.6545 -1.0594 -3.4194 32 1 5.1714 -1.3618 -2.5383 33 1 3.8000 -2.4820 -2.3595 34 1 3.3285 1.4128 -1.9029 35 1 5.6632 6.0760 -2.0537 36 1 7.7158 5.0885 -0.9546 37 1 2.2491 -1.6318 1.1526 38 1 3.0611 -0.4626 5.4348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134415460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:54 Heat of formation + Delta-G solvation = 0.091956 kcal Electronic energy + Delta-G solvation = -22279.621699 eV Core-core repulsion = 18889.078461 eV Total energy + Delta-G solvation = -3390.543238 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.74077 -38.09513 -36.80557 -36.01356 -34.55260 -32.19523 -31.22617 -29.54521 -29.12868 -26.42607 -25.15133 -23.30009 -22.22325 -20.68081 -19.87330 -19.47625 -18.75418 -17.53439 -16.45626 -15.96184 -15.32557 -15.02604 -14.65247 -14.14622 -13.81879 -13.68367 -13.60253 -13.41399 -12.95101 -12.88768 -12.63066 -12.37449 -12.10063 -11.96960 -11.70251 -11.47289 -11.42543 -11.22552 -10.87825 -10.78062 -10.63817 -10.49321 -10.26944 -9.94116 -9.67629 -9.51366 -9.08533 -8.86158 -8.77526 -8.62149 -7.19645 -5.69229 -3.04089 0.27394 1.05649 1.52609 2.10148 2.46422 3.23345 3.38275 3.43563 3.47981 3.53191 4.65160 4.67231 4.86077 4.95483 5.04648 5.24891 5.30295 5.47159 5.53626 5.60885 5.72867 5.76867 5.80593 5.81863 5.88419 6.00695 6.18866 6.25700 6.32644 6.43661 6.52884 6.70268 6.82412 6.99945 7.64583 8.05629 8.40089 8.49476 9.27990 10.00931 10.19781 11.49379 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.004915 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.171753 B = 5695.239256 C = 6374.753621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.145 3.855 6 H 0.103 0.897 7 C -0.162 4.162 8 N -0.712 5.712 9 C 0.587 3.413 10 O -0.503 6.503 11 C -0.253 4.253 12 S 0.237 5.763 13 C -0.228 4.228 14 C -0.141 4.141 15 C 0.013 3.987 16 Cl -0.013 7.013 17 N -0.745 5.745 18 C -0.238 4.238 19 H 0.087 0.913 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.880 3.120 23 H -0.282 1.282 24 H -0.293 1.293 25 H -0.278 1.278 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.391 0.609 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.360 0.640 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 8.387 -19.598 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.041 3.959 6 H 0.120 0.880 7 C -0.221 4.221 8 N -0.363 5.363 9 C 0.371 3.629 10 O -0.378 6.378 11 C -0.375 4.375 12 S 0.503 5.497 13 C -0.366 4.366 14 C -0.173 4.173 15 C -0.029 4.029 16 Cl 0.016 6.984 17 N -0.388 5.388 18 C -0.368 4.368 19 H 0.105 0.895 20 C -0.189 4.189 21 N -0.583 5.583 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.225 0.775 35 H 0.194 0.806 36 H 0.171 0.829 37 H 0.192 0.808 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.033 7.931 -19.580 21.342 hybrid contribution 1.552 -0.836 0.679 1.890 sum 4.585 7.095 -18.901 20.703 Atomic orbital electron populations 1.22423 0.98959 1.00842 1.00323 1.20200 0.91798 0.95820 0.85535 0.92812 1.22237 0.93652 1.02305 0.99219 1.21044 0.95160 0.79819 0.99873 0.87951 1.22199 1.01796 1.00035 0.98034 1.45789 1.15855 1.11799 1.62886 1.16672 0.82507 0.84973 0.78705 1.90905 1.50783 1.54397 1.41741 1.24658 0.99366 0.99672 1.13771 1.83012 1.15690 0.96307 1.54685 1.25146 0.98570 1.05506 1.07360 1.19763 1.01104 0.92982 1.03418 1.20358 0.90867 0.92477 0.99218 1.98413 1.47607 1.73752 1.78670 1.42767 1.79680 1.09215 1.07149 1.18990 1.36798 0.95314 0.85667 0.89472 1.24631 1.01372 0.97341 0.95601 1.69693 1.52779 1.35497 1.00284 0.86610 0.78717 0.86967 0.76637 1.20899 1.21913 1.20393 0.92399 0.94369 0.93626 0.90523 0.91487 0.92849 0.92257 0.91694 0.77495 0.80633 0.82911 0.80755 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.49 37.16 0.35 -2.39 16 2 C 0.18 3.18 2.84 -67.93 -0.19 2.99 16 3 H 0.05 1.02 7.56 -51.93 -0.39 0.62 16 4 C -0.14 -1.90 4.29 -26.73 -0.11 -2.02 16 5 C 0.14 2.22 2.52 -67.93 -0.17 2.05 16 6 H 0.10 2.02 7.05 -51.93 -0.37 1.65 16 7 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 8 N -0.71 -10.40 4.44 -55.18 -0.25 -10.65 16 9 C 0.59 10.07 7.74 -12.96 -0.10 9.97 16 10 O -0.50 -10.53 14.75 5.17 0.08 -10.45 16 11 C -0.25 -3.65 6.45 -36.80 -0.24 -3.89 16 12 S 0.24 2.31 22.15 -107.50 -2.38 -0.07 16 13 C -0.23 -2.00 10.92 29.16 0.32 -1.68 16 14 C -0.14 -1.51 10.06 -41.38 -0.42 -1.93 16 15 C 0.01 0.18 6.40 -40.34 -0.26 -0.07 16 16 Cl -0.01 -0.21 27.24 -51.86 -1.41 -1.62 16 17 N -0.74 -17.33 4.30 -53.42 -0.23 -17.55 16 18 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -30.09 13.97 55.49 0.78 -29.32 16 22 Si 0.88 22.93 27.74 -169.99 -4.71 18.22 16 23 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 25 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.39 4.59 7.71 -40.82 -0.31 4.28 16 35 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.36 8.36 5.66 -40.82 -0.23 8.13 16 38 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -34.87 347.02 -8.75 -43.61 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.12 Total: 8.10 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.72 Total: -5.50 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.30 Total: -57.52 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.22 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.38 Total: -0.07 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.41 Total: -1.62 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.87 -8.75 -43.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134415460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.705 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds