Wall clock time and date at job start Tue Mar 31 2020 10:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 H 1.09003 * 109.46772 * 54.99753 * 5 4 2 7 7 C 1.52997 * 109.47131 * 175.00107 * 5 4 2 8 8 N 1.46496 * 109.46972 * 295.00263 * 5 4 2 9 9 C 1.34774 * 120.00165 * 154.99647 * 8 5 4 10 10 O 1.21725 * 119.99831 * 359.97438 * 9 8 5 11 11 C 1.46442 * 120.00312 * 179.97438 * 9 8 5 12 12 S 1.75823 * 125.46198 * 0.02562 * 11 9 8 13 13 C 1.70611 * 91.58848 * 179.97438 * 12 11 9 14 14 C 1.33770 * 110.99517 * 0.02562 * 13 12 11 15 15 C 1.36790 * 125.46200 * 179.71854 * 11 9 8 16 16 Cl 1.73603 * 123.38242 * 0.02562 * 15 11 9 17 17 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 18 18 C 1.36939 * 119.99555 * 274.99680 * 17 2 1 19 19 H 1.07999 * 120.00498 * 0.02562 * 18 17 2 20 20 C 1.38813 * 119.99885 * 179.97438 * 18 17 2 21 21 N 1.31621 * 120.00371 * 179.97438 * 20 18 17 22 22 Si 1.86810 * 119.99869 * 0.02562 * 20 18 17 23 23 H 1.48490 * 109.46935 * 89.99729 * 22 20 18 24 24 H 1.48496 * 109.46829 * 209.99889 * 22 20 18 25 25 H 1.48498 * 109.46724 * 329.99773 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 30 30 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 31 31 H 1.08997 * 109.47170 * 60.00271 * 7 5 4 32 32 H 1.08997 * 109.46822 * 180.02562 * 7 5 4 33 33 H 1.09001 * 109.46769 * 299.99905 * 7 5 4 34 34 H 0.97000 * 120.00608 * 334.99964 * 8 5 4 35 35 H 1.07991 * 124.50041 * 179.97438 * 13 12 11 36 36 H 1.08003 * 122.45260 * 180.02562 * 14 13 12 37 37 H 0.96998 * 120.00364 * 94.99433 * 17 2 1 38 38 H 0.96993 * 120.00193 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4383 -2.4926 8 7 3.9479 0.7893 -1.4925 9 6 5.1611 1.2135 -1.0868 10 8 5.9384 0.4312 -0.5714 11 6 5.5443 2.6155 -1.2660 12 16 4.5388 3.8634 -1.9892 13 6 5.7541 5.0395 -1.7645 14 6 6.8349 4.5070 -1.1834 15 6 6.7397 3.1655 -0.8922 16 17 8.0113 2.2607 -0.1318 17 7 2.0184 -0.6907 1.1961 18 6 2.1493 -0.0075 2.3757 19 1 1.8920 1.0403 2.4244 20 6 2.6115 -0.6620 3.5092 21 7 2.7377 -0.0053 4.6429 22 14 3.0557 -2.4746 3.4253 23 1 4.4885 -2.6167 3.0620 24 1 2.8156 -3.1047 4.7483 25 1 2.2161 -3.1429 2.3989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.6545 -1.0594 -3.4194 32 1 5.1714 -1.3618 -2.5383 33 1 3.8000 -2.4820 -2.3595 34 1 3.3285 1.4128 -1.9029 35 1 5.6632 6.0760 -2.0537 36 1 7.7158 5.0885 -0.9546 37 1 2.2491 -1.6318 1.1526 38 1 3.0611 -0.4626 5.4348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134415460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:54 Heat of formation + Delta-G solvation = -24.302781 kcal Electronic energy + Delta-G solvation = -22280.679534 eV Core-core repulsion = 18889.078461 eV Total energy + Delta-G solvation = -3391.601073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96405 -39.12019 -38.21914 -37.07727 -36.11819 -34.10427 -32.58910 -31.09973 -30.34297 -27.60971 -26.11005 -25.32925 -23.32422 -21.99745 -21.34211 -20.48428 -19.93882 -19.47965 -17.51845 -17.12446 -16.69575 -16.38613 -16.16304 -15.71721 -15.26314 -14.88979 -14.64966 -14.53561 -14.47382 -14.20474 -14.01946 -13.81562 -13.42591 -13.23494 -12.99639 -12.82788 -12.64882 -12.52215 -12.31313 -12.28634 -12.01264 -11.88936 -11.84899 -11.69443 -11.43973 -11.00046 -10.94691 -10.18601 -9.84102 -9.48808 -9.26092 -8.00928 -5.30564 -0.67963 0.13808 0.72049 1.20038 1.31671 1.39012 1.42743 1.43222 2.05791 2.20759 2.48191 3.32647 3.65789 3.69744 3.86230 4.01099 4.07294 4.18209 4.34303 4.51925 4.65484 4.67393 4.77347 4.82951 4.89809 4.92530 4.98646 5.02348 5.09418 5.21465 5.33183 5.37512 5.56698 5.62176 5.80688 6.23995 6.49521 7.12040 7.20893 7.90944 8.06234 9.21301 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.004915 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.171753 B = 5695.239256 C = 6374.753621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.042 0.958 4 C -0.122 4.122 5 C 0.142 3.858 6 H 0.051 0.949 7 C -0.152 4.152 8 N -0.702 5.702 9 C 0.577 3.423 10 O -0.557 6.557 11 C -0.305 4.305 12 S 0.305 5.695 13 C -0.204 4.204 14 C -0.160 4.160 15 C 0.000 4.000 16 Cl -0.044 7.044 17 N -0.749 5.749 18 C -0.211 4.211 19 H 0.054 0.946 20 C -0.068 4.068 21 N -0.987 5.987 22 Si 0.945 3.055 23 H -0.294 1.294 24 H -0.297 1.297 25 H -0.244 1.244 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.407 0.593 35 H 0.220 0.780 36 H 0.173 0.827 37 H 0.362 0.638 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 9.107 -23.254 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.060 0.940 4 C -0.160 4.160 5 C 0.038 3.962 6 H 0.070 0.930 7 C -0.210 4.210 8 N -0.354 5.354 9 C 0.364 3.636 10 O -0.437 6.437 11 C -0.426 4.426 12 S 0.572 5.428 13 C -0.342 4.342 14 C -0.190 4.190 15 C -0.043 4.043 16 Cl -0.015 7.015 17 N -0.392 5.392 18 C -0.342 4.342 19 H 0.072 0.928 20 C -0.259 4.259 21 N -0.639 5.639 22 Si 0.774 3.226 23 H -0.222 1.222 24 H -0.224 1.224 25 H -0.168 1.168 26 H 0.045 0.955 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.243 0.757 35 H 0.236 0.764 36 H 0.190 0.810 37 H 0.194 0.806 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.117 8.662 -23.333 24.914 hybrid contribution 2.038 -0.839 1.690 2.777 sum 3.155 7.822 -21.643 23.229 Atomic orbital electron populations 1.22279 0.97018 1.01423 1.00894 1.20532 0.93012 0.95364 0.85326 0.94003 1.22169 0.92322 1.02992 0.98504 1.20994 0.96003 0.80357 0.98874 0.93031 1.22099 1.00448 1.00429 0.98034 1.45708 1.15427 1.12027 1.62195 1.17160 0.82584 0.85966 0.77914 1.90862 1.52346 1.56197 1.44254 1.24666 1.01217 0.99896 1.16867 1.82693 1.14021 0.93932 1.52187 1.25724 0.97018 1.07126 1.04315 1.19917 1.02880 0.91591 1.04569 1.20789 0.90267 0.93779 0.99505 1.98392 1.48969 1.74789 1.79368 1.42829 1.79899 1.09308 1.07193 1.18955 1.33800 0.94072 0.87387 0.92761 1.25400 1.02962 1.01996 0.95504 1.69869 1.55433 1.37402 1.01146 0.85544 0.78007 0.81953 0.77140 1.22161 1.22354 1.16806 0.95548 0.90093 0.93019 0.89222 0.86905 0.89794 0.94444 0.90453 0.75703 0.76370 0.81012 0.80553 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 9.49 71.98 0.68 -4.04 16 2 C 0.17 5.65 2.84 44.99 0.13 5.77 16 3 H 0.04 1.53 7.56 -2.39 -0.02 1.52 16 4 C -0.12 -2.98 4.29 30.60 0.13 -2.85 16 5 C 0.14 4.17 2.52 44.99 0.11 4.28 16 6 H 0.05 2.08 7.05 -2.39 -0.02 2.06 16 7 C -0.15 -3.55 9.48 71.98 0.68 -2.86 16 8 N -0.70 -19.89 4.44 -446.71 -1.98 -21.87 16 9 C 0.58 20.31 7.74 86.38 0.67 20.98 16 10 O -0.56 -24.78 14.75 -4.43 -0.07 -24.85 16 11 C -0.31 -8.76 6.45 24.07 0.16 -8.60 16 12 S 0.31 5.03 22.15 -56.49 -1.25 3.78 16 13 C -0.20 -2.81 10.92 66.80 0.73 -2.08 16 14 C -0.16 -3.13 10.06 21.10 0.21 -2.92 16 15 C 0.00 0.00 6.40 21.78 0.14 0.14 16 16 Cl -0.04 -1.47 27.24 -2.72 -0.07 -1.54 16 17 N -0.75 -34.53 4.30 -322.93 -1.39 -35.92 16 18 C -0.21 -12.25 10.41 84.03 0.87 -11.38 16 19 H 0.05 3.46 8.06 -2.91 -0.02 3.44 16 20 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 21 N -0.99 -66.22 13.97 21.65 0.30 -65.92 16 22 Si 0.94 48.59 27.74 68.60 1.90 50.49 16 23 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 24 H -0.30 -15.34 7.11 99.48 0.71 -14.64 16 25 H -0.24 -11.01 6.52 99.48 0.65 -10.37 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.41 8.58 7.71 -92.71 -0.71 7.87 16 35 H 0.22 1.12 8.06 -2.92 -0.02 1.09 16 36 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.36 16.38 5.66 -92.71 -0.52 15.85 16 38 H 0.25 16.36 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -83.20 347.02 2.22 -80.98 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -0.21 Total: 22.11 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.98 Total: -7.26 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -3.07 Total: -123.71 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.07 Total: -24.85 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.90 Total: 50.49 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.25 Total: 3.78 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.54 kcal Total: -83.20 2.22 -80.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134415460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.675 kcal (2) G-P(sol) polarization free energy of solvation -83.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds