Wall clock time and date at job start Tue Mar 31 2020 11:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09001 * 109.46555 * 305.00314 * 5 4 2 7 7 C 1.53000 * 109.47280 * 185.00345 * 5 4 2 8 8 N 1.46498 * 109.47042 * 65.00151 * 5 4 2 9 9 C 1.34775 * 120.00097 * 205.00659 * 8 5 4 10 10 O 1.21642 * 120.00071 * 359.97438 * 9 8 5 11 11 C 1.47157 * 120.00289 * 179.97438 * 9 8 5 12 12 C 1.36042 * 123.46465 * 0.02562 * 11 9 8 13 13 S 1.70448 * 110.83146 * 180.02562 * 12 11 9 14 14 C 1.75496 * 92.45522 * 359.97438 * 13 12 11 15 15 C 1.32844 * 110.58375 * 359.71600 * 14 13 12 16 16 Cl 1.73601 * 123.47299 * 180.28222 * 15 14 13 17 17 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 18 18 C 1.36931 * 119.99788 * 274.99780 * 17 2 1 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 2 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 27 27 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 29 29 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 30 30 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 31 31 H 1.08991 * 109.47284 * 59.99353 * 7 5 4 32 32 H 1.09002 * 109.46964 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.46977 * 299.99864 * 7 5 4 34 34 H 0.96996 * 120.00030 * 25.00106 * 8 5 4 35 35 H 1.08002 * 124.58752 * 359.97438 * 12 11 9 36 36 H 1.08004 * 124.70908 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99792 * 94.99575 * 17 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2676 7 6 4.0646 -1.2253 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3747 -0.9913 0.2736 10 8 5.9881 -0.0834 -0.2546 11 6 5.9659 -1.7151 1.4103 12 6 5.3434 -2.7403 2.0525 13 16 6.3147 -3.3423 3.3171 14 6 7.5964 -2.1913 2.9820 15 6 7.2697 -1.4144 1.9551 16 17 8.3007 -0.1626 1.3355 17 7 2.0183 -0.6906 1.1963 18 6 2.1491 -0.0075 2.3757 19 1 1.8919 1.0404 2.4243 20 6 2.6062 -0.6633 3.5106 21 7 2.9191 -1.9403 3.4515 22 14 2.7773 0.2668 5.1216 23 1 2.3647 1.6796 4.9237 24 1 1.9116 -0.3627 6.1509 25 1 4.1921 0.2230 5.5706 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 1.7516 -1.7716 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 3.6265 -0.6890 -3.4656 32 1 5.1510 -1.1488 -2.6695 33 1 3.7723 -2.2744 -2.6698 34 1 3.6646 -2.0586 0.2388 35 1 4.3656 -3.1207 1.7962 36 1 8.5243 -2.1270 3.5309 37 1 2.2489 -1.6318 1.1527 38 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134685948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:48 Heat of formation + Delta-G solvation = 0.735438 kcal Electronic energy + Delta-G solvation = -23204.862216 eV Core-core repulsion = 19814.346882 eV Total energy + Delta-G solvation = -3390.515335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.37247 -37.26945 -36.35157 -35.33546 -34.11576 -32.31943 -30.80882 -29.06685 -28.35981 -26.33093 -24.46369 -23.70368 -21.80791 -20.26939 -20.03944 -18.67654 -17.61893 -17.19016 -16.48796 -15.58332 -14.82654 -14.53290 -14.34418 -13.85164 -13.70612 -13.23937 -12.98106 -12.81584 -12.62565 -12.51905 -12.37743 -12.12473 -11.84716 -11.72774 -11.65535 -11.07671 -11.01980 -10.92001 -10.83934 -10.74763 -10.35801 -10.26624 -10.24537 -9.91679 -9.72529 -9.05076 -8.99927 -8.41507 -8.29989 -7.84572 -6.97312 -5.88824 -3.09346 1.34047 1.73522 2.25767 2.36924 3.08411 3.40028 3.47469 3.49052 3.83570 4.15343 4.55741 5.08098 5.17563 5.42218 5.48633 5.54003 5.67659 5.69894 5.84734 5.90059 5.97024 6.00474 6.02311 6.14394 6.23480 6.36194 6.37817 6.45657 6.50572 6.57344 6.60811 6.84024 7.03593 7.24611 7.66113 8.27043 8.33831 9.02868 9.45200 9.97748 10.33812 11.34573 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.007547 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.522908 B = 3709.321681 C = 5298.940783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.048 0.952 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.083 0.917 7 C -0.162 4.162 8 N -0.695 5.695 9 C 0.590 3.410 10 O -0.548 6.548 11 C -0.171 4.171 12 C -0.124 4.124 13 S 0.204 5.796 14 C -0.264 4.264 15 C 0.006 3.994 16 Cl -0.038 7.038 17 N -0.714 5.714 18 C -0.216 4.216 19 H 0.067 0.933 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.898 3.102 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.291 1.291 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.400 0.600 35 H 0.187 0.813 36 H 0.167 0.833 37 H 0.376 0.624 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -4.675 -6.080 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.101 0.899 7 C -0.220 4.220 8 N -0.347 5.347 9 C 0.376 3.624 10 O -0.427 6.427 11 C -0.187 4.187 12 C -0.263 4.263 13 S 0.467 5.533 14 C -0.400 4.400 15 C -0.034 4.034 16 Cl -0.009 7.009 17 N -0.357 5.357 18 C -0.347 4.347 19 H 0.085 0.915 20 C -0.204 4.204 21 N -0.581 5.581 22 Si 0.730 3.270 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.218 1.218 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.238 0.762 35 H 0.204 0.796 36 H 0.184 0.816 37 H 0.211 0.789 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.511 -4.903 -5.331 8.532 hybrid contribution -0.052 1.238 0.330 1.283 sum 4.460 -3.664 -5.001 7.637 Atomic orbital electron populations 1.22408 0.99253 1.00682 0.99935 1.20300 0.91651 0.95808 0.86370 0.93355 1.22208 0.94132 1.01506 0.99346 1.20771 0.92290 0.97354 0.84863 0.89862 1.22206 1.01888 1.00691 0.97248 1.45774 1.17624 1.37644 1.33695 1.17237 0.81092 0.82469 0.81593 1.90745 1.61991 1.30537 1.59423 1.19732 0.94725 1.01412 1.02873 1.25682 1.03312 0.99327 0.97997 1.82873 1.05853 1.32691 1.31896 1.25187 1.05833 1.04905 1.04096 1.20611 0.92358 0.93937 0.96446 1.98346 1.64974 1.50790 1.86790 1.42452 1.77740 1.10050 1.05448 1.19276 1.34612 0.93749 0.87063 0.91472 1.24449 1.02500 0.95980 0.97480 1.69492 1.51793 1.08424 1.28375 0.86234 0.77381 0.78967 0.84440 1.20902 1.22096 1.21829 0.94568 0.93633 0.92904 0.91837 0.90819 0.92227 0.92306 0.92928 0.76208 0.79617 0.81557 0.78900 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.17 3.05 2.89 -67.93 -0.20 2.85 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.95 4.43 -26.73 -0.12 -2.07 16 5 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16 6 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 7 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 8 N -0.69 -12.50 3.77 -54.96 -0.21 -12.71 16 9 C 0.59 12.14 7.76 -12.64 -0.10 12.04 16 10 O -0.55 -12.41 14.72 5.24 0.08 -12.33 16 11 C -0.17 -3.36 5.98 -104.61 -0.63 -3.99 16 12 C -0.12 -2.22 8.96 29.94 0.27 -1.95 16 13 S 0.20 3.12 23.02 -107.50 -2.47 0.64 16 14 C -0.26 -4.23 11.00 28.88 0.32 -3.92 16 15 C 0.01 0.11 6.49 -38.99 -0.25 -0.14 16 16 Cl -0.04 -0.69 27.24 -51.86 -1.41 -2.10 16 17 N -0.71 -15.42 3.84 -53.42 -0.21 -15.62 16 18 C -0.22 -5.44 9.93 -15.06 -0.15 -5.59 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -22.95 10.90 55.49 0.60 -22.34 16 22 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 7.10 5.01 -40.82 -0.20 6.89 16 35 H 0.19 3.38 6.34 -52.49 -0.33 3.04 16 36 H 0.17 2.20 8.06 -52.48 -0.42 1.78 16 37 H 0.38 8.17 5.70 -40.82 -0.23 7.94 16 38 H 0.25 6.22 8.31 -40.82 -0.34 5.88 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -27.50 340.89 -8.86 -36.35 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.93 Total: 11.36 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.42 Total: -5.03 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.19 Total: -50.67 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.47 Total: 0.64 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.41 Total: -2.10 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.50 -8.86 -36.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134685948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.090 kcal (2) G-P(sol) polarization free energy of solvation -27.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds