Wall clock time and date at job start Tue Mar 31 2020 11:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09001 * 109.46555 * 305.00314 * 5 4 2 7 7 C 1.53000 * 109.47280 * 185.00345 * 5 4 2 8 8 N 1.46498 * 109.47042 * 65.00151 * 5 4 2 9 9 C 1.34775 * 120.00097 * 205.00659 * 8 5 4 10 10 O 1.21642 * 120.00071 * 359.97438 * 9 8 5 11 11 C 1.47157 * 120.00289 * 179.97438 * 9 8 5 12 12 C 1.36042 * 123.46465 * 0.02562 * 11 9 8 13 13 S 1.70448 * 110.83146 * 180.02562 * 12 11 9 14 14 C 1.75496 * 92.45522 * 359.97438 * 13 12 11 15 15 C 1.32844 * 110.58375 * 359.71600 * 14 13 12 16 16 Cl 1.73601 * 123.47299 * 180.28222 * 15 14 13 17 17 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 18 18 C 1.36931 * 119.99788 * 274.99780 * 17 2 1 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 2 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 27 27 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 29 29 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 30 30 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 31 31 H 1.08991 * 109.47284 * 59.99353 * 7 5 4 32 32 H 1.09002 * 109.46964 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.46977 * 299.99864 * 7 5 4 34 34 H 0.96996 * 120.00030 * 25.00106 * 8 5 4 35 35 H 1.08002 * 124.58752 * 359.97438 * 12 11 9 36 36 H 1.08004 * 124.70908 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99792 * 94.99575 * 17 2 1 38 38 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2676 7 6 4.0646 -1.2253 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3747 -0.9913 0.2736 10 8 5.9881 -0.0834 -0.2546 11 6 5.9659 -1.7151 1.4103 12 6 5.3434 -2.7403 2.0525 13 16 6.3147 -3.3423 3.3171 14 6 7.5964 -2.1913 2.9820 15 6 7.2697 -1.4144 1.9551 16 17 8.3007 -0.1626 1.3355 17 7 2.0183 -0.6906 1.1963 18 6 2.1491 -0.0075 2.3757 19 1 1.8919 1.0404 2.4243 20 6 2.6062 -0.6633 3.5106 21 7 2.9191 -1.9403 3.4515 22 14 2.7773 0.2668 5.1216 23 1 2.3647 1.6796 4.9237 24 1 1.9116 -0.3627 6.1509 25 1 4.1921 0.2230 5.5706 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 1.7516 -1.7716 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 3.6265 -0.6890 -3.4656 32 1 5.1510 -1.1488 -2.6695 33 1 3.7723 -2.2744 -2.6698 34 1 3.6646 -2.0586 0.2388 35 1 4.3656 -3.1207 1.7962 36 1 8.5243 -2.1270 3.5309 37 1 2.2489 -1.6318 1.1527 38 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134685948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:47 Heat of formation + Delta-G solvation = -14.111795 kcal Electronic energy + Delta-G solvation = -23205.506041 eV Core-core repulsion = 19814.346882 eV Total energy + Delta-G solvation = -3391.159159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84368 -38.66208 -37.84161 -36.74561 -35.69549 -34.00040 -32.26694 -30.58357 -29.83415 -27.57693 -25.89113 -25.51021 -23.16016 -21.68631 -21.47936 -20.12219 -19.11368 -18.88495 -17.91871 -16.99769 -16.54703 -15.96356 -15.82592 -15.51359 -15.34979 -14.62026 -14.37357 -14.29519 -14.02835 -13.96979 -13.72137 -13.51672 -13.29399 -13.11464 -12.87736 -12.77886 -12.59002 -12.42644 -12.31293 -12.23574 -12.10919 -11.68761 -11.63771 -11.56880 -11.38130 -10.84774 -10.58541 -9.84727 -9.72587 -9.15637 -8.74363 -7.82290 -5.00161 -0.02697 0.42920 0.88173 0.95306 1.44443 1.50544 1.52904 1.72897 2.41315 2.62706 2.67129 3.53149 3.77340 3.89595 4.04931 4.20899 4.27478 4.41321 4.54939 4.59816 4.63181 4.72333 4.85836 4.89436 4.94925 5.00551 5.07678 5.11998 5.17258 5.20800 5.39872 5.44714 5.64108 5.66586 5.85422 6.43311 6.80554 7.51127 7.52987 8.20615 8.50361 9.39464 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.007547 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.522908 B = 3709.321681 C = 5298.940783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.025 0.975 4 C -0.119 4.119 5 C 0.148 3.852 6 H 0.054 0.946 7 C -0.151 4.151 8 N -0.688 5.688 9 C 0.579 3.421 10 O -0.579 6.579 11 C -0.196 4.196 12 C -0.135 4.135 13 S 0.267 5.733 14 C -0.254 4.254 15 C -0.026 4.026 16 Cl -0.045 7.045 17 N -0.716 5.716 18 C -0.225 4.225 19 H 0.048 0.952 20 C -0.038 4.038 21 N -0.928 5.928 22 Si 0.929 3.071 23 H -0.292 1.292 24 H -0.294 1.294 25 H -0.300 1.300 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.402 0.598 35 H 0.182 0.818 36 H 0.196 0.804 37 H 0.376 0.624 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -6.109 -6.599 9.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.043 0.957 4 C -0.157 4.157 5 C 0.044 3.956 6 H 0.072 0.928 7 C -0.209 4.209 8 N -0.339 5.339 9 C 0.366 3.634 10 O -0.462 6.462 11 C -0.212 4.212 12 C -0.274 4.274 13 S 0.531 5.469 14 C -0.390 4.390 15 C -0.066 4.066 16 Cl -0.017 7.017 17 N -0.359 5.359 18 C -0.357 4.357 19 H 0.066 0.934 20 C -0.233 4.233 21 N -0.578 5.578 22 Si 0.762 3.238 23 H -0.218 1.218 24 H -0.221 1.221 25 H -0.228 1.228 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.240 0.760 35 H 0.200 0.800 36 H 0.213 0.787 37 H 0.210 0.790 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.059 -6.356 -5.870 9.557 hybrid contribution 0.095 1.659 0.519 1.741 sum 4.154 -4.697 -5.351 8.243 Atomic orbital electron populations 1.22256 0.97637 1.01044 1.00276 1.20476 0.92705 0.94806 0.86687 0.95679 1.22120 0.92744 1.02148 0.98684 1.20916 0.93351 0.95849 0.85532 0.92782 1.22096 1.00551 1.01842 0.96401 1.45810 1.16859 1.37338 1.33872 1.17573 0.81662 0.82319 0.81884 1.90709 1.62917 1.31967 1.60575 1.19874 0.95667 1.02317 1.03350 1.25736 1.03608 0.99056 0.99022 1.82647 1.03977 1.30892 1.29369 1.25642 1.06932 1.03621 1.02764 1.20771 0.92583 0.95205 0.97990 1.98331 1.64965 1.51276 1.87080 1.42435 1.78048 1.09902 1.05505 1.19238 1.34712 0.93165 0.88629 0.93385 1.24751 1.03329 0.96750 0.98428 1.69528 1.52023 1.08019 1.28250 0.85757 0.76517 0.78096 0.83402 1.21757 1.22143 1.22771 0.91444 0.93159 0.95363 0.90380 0.87455 0.89658 0.94408 0.91278 0.76026 0.80048 0.78670 0.78965 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.49 71.98 0.68 -4.12 16 2 C 0.16 5.71 2.89 44.99 0.13 5.84 16 3 H 0.03 1.00 8.08 -2.39 -0.02 0.98 16 4 C -0.12 -3.19 4.43 30.59 0.14 -3.06 16 5 C 0.15 4.63 2.57 44.99 0.12 4.74 16 6 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 7 C -0.15 -3.80 9.48 71.98 0.68 -3.12 16 8 N -0.69 -24.68 3.77 -446.05 -1.68 -26.36 16 9 C 0.58 24.22 7.76 86.59 0.67 24.89 16 10 O -0.58 -27.06 14.72 -4.16 -0.06 -27.12 16 11 C -0.20 -7.68 5.98 -19.86 -0.12 -7.80 16 12 C -0.13 -4.72 8.96 67.31 0.60 -4.11 16 13 S 0.27 7.60 23.02 -56.49 -1.30 6.30 16 14 C -0.25 -7.64 11.00 66.64 0.73 -6.90 16 15 C -0.03 -0.97 6.49 22.68 0.15 -0.83 16 16 Cl -0.05 -1.66 27.24 -2.72 -0.07 -1.74 16 17 N -0.72 -30.78 3.84 -322.93 -1.24 -32.02 16 18 C -0.22 -11.47 9.93 84.04 0.83 -10.63 16 19 H 0.05 2.59 7.83 -2.91 -0.02 2.57 16 20 C -0.04 -1.94 5.50 84.86 0.47 -1.47 16 21 N -0.93 -45.08 10.90 21.65 0.24 -44.84 16 22 Si 0.93 44.41 29.55 68.60 2.03 46.44 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.40 14.07 5.01 -92.71 -0.46 13.60 16 35 H 0.18 6.47 6.34 -2.91 -0.02 6.45 16 36 H 0.20 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.38 16.09 5.70 -92.71 -0.53 15.56 16 38 H 0.25 12.07 8.31 -92.70 -0.77 11.30 16 Total: -1.00 -60.10 340.89 3.09 -57.02 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.10 Total: 28.90 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 5.08 Total: -6.57 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -2.69 Total: -103.23 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.06 Total: -27.12 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 7.60 SS G_CDS: -1.30 Total: 6.30 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.74 kcal Total: -60.10 3.09 -57.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134685948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.904 kcal (2) G-P(sol) polarization free energy of solvation -60.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds