Wall clock time and date at job start Tue Mar 31 2020 11:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 H 1.09000 * 109.47333 * 305.00136 * 5 4 2 7 7 C 1.53005 * 109.46993 * 185.00056 * 5 4 2 8 8 N 1.46500 * 109.47059 * 65.00370 * 5 4 2 9 9 C 1.34781 * 119.99835 * 204.99719 * 8 5 4 10 10 O 1.21636 * 120.00150 * 359.97438 * 9 8 5 11 11 C 1.47156 * 119.99726 * 179.97438 * 9 8 5 12 12 C 1.36049 * 123.46829 * 0.02562 * 11 9 8 13 13 S 1.70445 * 110.83228 * 179.97438 * 12 11 9 14 14 C 1.75500 * 92.45542 * 0.02562 * 13 12 11 15 15 C 1.32839 * 110.58165 * 359.71385 * 14 13 12 16 16 Cl 1.73601 * 123.46993 * 180.28449 * 15 14 13 17 17 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 18 18 C 1.36936 * 119.99910 * 84.99534 * 17 2 1 19 19 H 1.07996 * 119.99948 * 0.02562 * 18 17 2 20 20 C 1.38815 * 119.99722 * 180.02562 * 18 17 2 21 21 N 1.31623 * 119.99641 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00340 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47212 * 89.99907 * 22 20 18 24 24 H 1.48502 * 109.47080 * 209.99958 * 22 20 18 25 25 H 1.48507 * 109.46915 * 329.99961 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 30 30 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 31 31 H 1.09000 * 109.47146 * 300.00194 * 7 5 4 32 32 H 1.09003 * 109.47291 * 60.00559 * 7 5 4 33 33 H 1.09000 * 109.46901 * 180.02562 * 7 5 4 34 34 H 0.97002 * 119.99992 * 25.00166 * 8 5 4 35 35 H 1.08000 * 124.58510 * 0.02562 * 12 11 9 36 36 H 1.08004 * 124.70959 * 180.02562 * 14 13 12 37 37 H 0.96997 * 120.00110 * 265.00363 * 17 2 1 38 38 H 0.96997 * 119.99774 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2135 1.0865 10 8 5.9383 0.4316 0.5723 11 6 5.5459 2.6225 1.2656 12 6 4.7338 3.5558 1.8317 13 16 5.5000 5.0776 1.8787 14 6 6.9533 4.4537 1.1180 15 6 6.8270 3.1560 0.8637 16 17 8.0712 2.2004 0.1205 17 7 2.0184 -0.6906 -1.1962 18 6 2.1490 -0.0075 -2.3758 19 1 1.8925 1.0405 -2.4241 20 6 2.6112 -0.6620 -3.5093 21 7 2.7373 -0.0053 -4.6430 22 14 3.0542 -2.4748 -3.4258 23 1 1.8564 -3.2923 -3.7452 24 1 4.1294 -2.7673 -4.4075 25 1 3.5292 -2.8058 -2.0582 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6055 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.6547 -1.0594 3.4192 32 1 3.8002 -2.4820 2.3593 33 1 5.1715 -1.3611 2.5384 34 1 3.3285 1.4128 1.9028 35 1 3.7386 3.3589 2.2019 36 1 7.8307 5.0419 0.8928 37 1 2.2490 -1.6317 -1.1527 38 1 3.0599 -0.4627 -5.4352 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134685950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:53 Heat of formation + Delta-G solvation = -1.381024 kcal Electronic energy + Delta-G solvation = -22302.668442 eV Core-core repulsion = 18912.061331 eV Total energy + Delta-G solvation = -3390.607111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.84858 -37.68306 -36.68450 -35.83920 -34.53965 -32.18612 -31.19733 -29.50275 -29.11951 -26.41761 -25.14117 -23.29833 -22.18700 -20.71282 -19.84044 -19.38570 -18.32900 -17.57669 -17.10210 -15.80747 -15.03400 -14.94039 -14.64860 -14.14475 -13.75303 -13.69996 -13.41604 -13.34243 -13.01603 -12.90733 -12.61303 -12.37408 -12.07684 -11.96722 -11.72047 -11.63847 -11.44933 -11.20472 -10.89867 -10.73576 -10.64389 -10.46859 -10.25191 -9.93483 -9.52866 -9.51576 -9.14757 -8.86416 -8.77853 -8.49405 -7.19708 -5.69319 -3.04124 0.53318 1.08958 1.49457 1.74035 2.56298 3.32686 3.44495 3.47525 3.52770 3.54922 4.43555 4.67188 4.91046 5.00393 5.11231 5.21268 5.25807 5.32539 5.54137 5.61008 5.63859 5.73919 5.77528 5.83150 5.88852 6.01219 6.18740 6.27036 6.33126 6.43273 6.55982 6.74362 6.84110 6.99368 7.74044 8.05386 8.49348 8.51057 9.27905 10.00884 10.19726 11.49318 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.004674 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.718052 B = 5989.162148 C = 6598.859402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.053 0.947 4 C -0.135 4.135 5 C 0.145 3.855 6 H 0.102 0.898 7 C -0.161 4.161 8 N -0.711 5.711 9 C 0.574 3.426 10 O -0.511 6.511 11 C -0.137 4.137 12 C -0.208 4.208 13 S 0.219 5.781 14 C -0.239 4.239 15 C -0.005 4.005 16 Cl -0.015 7.015 17 N -0.745 5.745 18 C -0.238 4.238 19 H 0.087 0.913 20 C 0.006 3.994 21 N -0.935 5.935 22 Si 0.882 3.118 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.276 1.276 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.392 0.608 35 H 0.177 0.823 36 H 0.178 0.822 37 H 0.360 0.640 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 8.831 19.560 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.173 4.173 5 C 0.041 3.959 6 H 0.120 0.880 7 C -0.220 4.220 8 N -0.362 5.362 9 C 0.358 3.642 10 O -0.386 6.386 11 C -0.155 4.155 12 C -0.347 4.347 13 S 0.483 5.517 14 C -0.375 4.375 15 C -0.044 4.044 16 Cl 0.013 6.987 17 N -0.388 5.388 18 C -0.367 4.367 19 H 0.105 0.895 20 C -0.190 4.190 21 N -0.583 5.583 22 Si 0.713 3.287 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.202 1.202 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.226 0.774 35 H 0.194 0.806 36 H 0.195 0.805 37 H 0.192 0.808 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.436 9.751 19.444 22.200 hybrid contribution 0.406 -2.461 -0.577 2.560 sum 4.843 7.290 18.867 20.798 Atomic orbital electron populations 1.22425 0.99003 1.00845 1.00278 1.20192 0.91738 0.95810 0.85551 0.92861 1.22222 0.93791 1.02202 0.99114 1.21016 0.95004 0.80120 0.99796 0.88018 1.22194 1.01765 0.99997 0.98034 1.45764 1.16099 1.11554 1.62818 1.17334 0.82323 0.86012 0.78577 1.90862 1.50733 1.55316 1.41726 1.20098 0.93781 0.95901 1.05701 1.25595 1.04886 0.98601 1.05572 1.83005 1.04822 1.07768 1.56086 1.25383 1.04713 0.97367 1.10014 1.20689 0.91397 0.91566 1.00736 1.98410 1.49245 1.71260 1.79747 1.42763 1.79567 1.09338 1.07125 1.18986 1.36854 0.95375 0.85527 0.89512 1.24634 1.01344 0.97387 0.95613 1.69696 1.52827 1.35487 1.00253 0.86576 0.77936 0.87004 0.77199 1.21313 1.21838 1.20225 0.94421 0.92419 0.93615 0.91597 0.90655 0.92963 0.91824 0.92304 0.77401 0.80560 0.80484 0.80751 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.49 37.16 0.35 -2.38 16 2 C 0.18 3.18 2.84 -67.93 -0.19 2.99 16 3 H 0.05 1.00 7.56 -51.93 -0.39 0.61 16 4 C -0.13 -1.89 4.29 -26.73 -0.11 -2.01 16 5 C 0.14 2.23 2.52 -67.93 -0.17 2.06 16 6 H 0.10 2.05 7.05 -51.93 -0.37 1.68 16 7 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 8 N -0.71 -10.18 4.42 -54.96 -0.24 -10.42 16 9 C 0.57 9.76 7.76 -12.64 -0.10 9.67 16 10 O -0.51 -10.73 14.72 5.25 0.08 -10.65 16 11 C -0.14 -1.94 5.98 -104.61 -0.63 -2.56 16 12 C -0.21 -2.13 10.38 29.95 0.31 -1.82 16 13 S 0.22 1.81 23.02 -107.50 -2.47 -0.67 16 14 C -0.24 -2.51 11.00 28.87 0.32 -2.19 16 15 C -0.01 -0.07 6.49 -38.99 -0.25 -0.33 16 16 Cl -0.02 -0.24 27.24 -51.86 -1.41 -1.66 16 17 N -0.74 -17.33 4.30 -53.42 -0.23 -17.56 16 18 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -30.14 13.97 55.49 0.78 -29.36 16 22 Si 0.88 23.02 27.74 -169.99 -4.71 18.31 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.39 4.31 7.10 -40.82 -0.29 4.02 16 35 H 0.18 1.29 7.01 -52.49 -0.37 0.92 16 36 H 0.18 1.43 8.06 -52.48 -0.42 1.00 16 37 H 0.36 8.38 5.66 -40.82 -0.23 8.14 16 38 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -35.20 346.22 -8.42 -43.62 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.04 Total: 8.30 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.37 Total: -5.13 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.30 Total: -57.35 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.31 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.47 Total: -0.67 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.41 Total: -1.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.20 -8.42 -43.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134685950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.240 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds