Wall clock time and date at job start Tue Mar 31 2020 11:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 H 1.09000 * 109.47333 * 305.00136 * 5 4 2 7 7 C 1.53005 * 109.46993 * 185.00056 * 5 4 2 8 8 N 1.46500 * 109.47059 * 65.00370 * 5 4 2 9 9 C 1.34781 * 119.99835 * 204.99719 * 8 5 4 10 10 O 1.21636 * 120.00150 * 359.97438 * 9 8 5 11 11 C 1.47156 * 119.99726 * 179.97438 * 9 8 5 12 12 C 1.36049 * 123.46829 * 0.02562 * 11 9 8 13 13 S 1.70445 * 110.83228 * 179.97438 * 12 11 9 14 14 C 1.75500 * 92.45542 * 0.02562 * 13 12 11 15 15 C 1.32839 * 110.58165 * 359.71385 * 14 13 12 16 16 Cl 1.73601 * 123.46993 * 180.28449 * 15 14 13 17 17 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 18 18 C 1.36936 * 119.99910 * 84.99534 * 17 2 1 19 19 H 1.07996 * 119.99948 * 0.02562 * 18 17 2 20 20 C 1.38815 * 119.99722 * 180.02562 * 18 17 2 21 21 N 1.31623 * 119.99641 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00340 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47212 * 89.99907 * 22 20 18 24 24 H 1.48502 * 109.47080 * 209.99958 * 22 20 18 25 25 H 1.48507 * 109.46915 * 329.99961 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 30 30 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 31 31 H 1.09000 * 109.47146 * 300.00194 * 7 5 4 32 32 H 1.09003 * 109.47291 * 60.00559 * 7 5 4 33 33 H 1.09000 * 109.46901 * 180.02562 * 7 5 4 34 34 H 0.97002 * 119.99992 * 25.00166 * 8 5 4 35 35 H 1.08000 * 124.58510 * 0.02562 * 12 11 9 36 36 H 1.08004 * 124.70959 * 180.02562 * 14 13 12 37 37 H 0.96997 * 120.00110 * 265.00363 * 17 2 1 38 38 H 0.96997 * 119.99774 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2135 1.0865 10 8 5.9383 0.4316 0.5723 11 6 5.5459 2.6225 1.2656 12 6 4.7338 3.5558 1.8317 13 16 5.5000 5.0776 1.8787 14 6 6.9533 4.4537 1.1180 15 6 6.8270 3.1560 0.8637 16 17 8.0712 2.2004 0.1205 17 7 2.0184 -0.6906 -1.1962 18 6 2.1490 -0.0075 -2.3758 19 1 1.8925 1.0405 -2.4241 20 6 2.6112 -0.6620 -3.5093 21 7 2.7373 -0.0053 -4.6430 22 14 3.0542 -2.4748 -3.4258 23 1 1.8564 -3.2923 -3.7452 24 1 4.1294 -2.7673 -4.4075 25 1 3.5292 -2.8058 -2.0582 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6055 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.6547 -1.0594 3.4192 32 1 3.8002 -2.4820 2.3593 33 1 5.1715 -1.3611 2.5384 34 1 3.3285 1.4128 1.9028 35 1 3.7386 3.3589 2.2019 36 1 7.8307 5.0419 0.8928 37 1 2.2490 -1.6317 -1.1527 38 1 3.0599 -0.4627 -5.4352 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134685950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:52 Heat of formation + Delta-G solvation = -26.296487 kcal Electronic energy + Delta-G solvation = -22303.748858 eV Core-core repulsion = 18912.061331 eV Total energy + Delta-G solvation = -3391.687527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02335 -38.81116 -38.01156 -36.88441 -36.09206 -34.08802 -32.51015 -31.07926 -30.28306 -27.60245 -26.11926 -25.32821 -23.27792 -21.99228 -21.30557 -20.47160 -19.71235 -19.12865 -18.15570 -17.08122 -16.60000 -16.11869 -16.11349 -15.67452 -15.27064 -14.81000 -14.63710 -14.45060 -14.36401 -14.15217 -13.97319 -13.84494 -13.41607 -13.22165 -12.98582 -12.80614 -12.63656 -12.55458 -12.47106 -12.37865 -11.98784 -11.86300 -11.76042 -11.67640 -11.43804 -10.96333 -10.78268 -10.09348 -9.93162 -9.31520 -9.25658 -8.01174 -5.30540 -0.32624 0.27765 0.66607 0.72740 1.32364 1.38028 1.42927 1.62225 2.21908 2.38969 2.48037 3.32300 3.60999 3.66745 3.80973 4.00788 4.11236 4.28384 4.34402 4.39398 4.53137 4.66914 4.74093 4.77763 4.82861 4.87824 4.91875 5.02268 5.09183 5.23429 5.33876 5.39564 5.62208 5.64032 5.80593 6.23903 6.64038 7.12026 7.35638 7.91312 8.06171 9.21134 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.004674 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.718052 B = 5989.162148 C = 6598.859402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.043 0.957 4 C -0.120 4.120 5 C 0.143 3.857 6 H 0.047 0.953 7 C -0.151 4.151 8 N -0.699 5.699 9 C 0.564 3.436 10 O -0.567 6.567 11 C -0.182 4.182 12 C -0.200 4.200 13 S 0.320 5.680 14 C -0.240 4.240 15 C -0.041 4.041 16 Cl -0.050 7.050 17 N -0.749 5.749 18 C -0.210 4.210 19 H 0.054 0.946 20 C -0.068 4.068 21 N -0.987 5.987 22 Si 0.946 3.054 23 H -0.273 1.273 24 H -0.305 1.305 25 H -0.258 1.258 26 H 0.080 0.920 27 H 0.025 0.975 28 H 0.050 0.950 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.410 0.590 35 H 0.208 0.792 36 H 0.198 0.802 37 H 0.361 0.639 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 9.760 23.312 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.061 0.939 4 C -0.158 4.158 5 C 0.038 3.962 6 H 0.065 0.935 7 C -0.209 4.209 8 N -0.352 5.352 9 C 0.349 3.651 10 O -0.447 6.447 11 C -0.200 4.200 12 C -0.338 4.338 13 S 0.585 5.415 14 C -0.376 4.376 15 C -0.080 4.080 16 Cl -0.022 7.022 17 N -0.392 5.392 18 C -0.342 4.342 19 H 0.072 0.928 20 C -0.259 4.259 21 N -0.639 5.639 22 Si 0.775 3.225 23 H -0.199 1.199 24 H -0.233 1.233 25 H -0.183 1.183 26 H 0.099 0.901 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.247 0.753 35 H 0.225 0.775 36 H 0.216 0.784 37 H 0.194 0.806 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.490 10.702 23.294 25.756 hybrid contribution 0.901 -2.469 -1.604 3.079 sum 3.392 8.233 21.691 23.447 Atomic orbital electron populations 1.22280 0.97078 1.01397 1.00851 1.20528 0.92922 0.95402 0.85276 0.93891 1.22145 0.92422 1.02785 0.98492 1.20920 0.95833 0.80864 0.98538 0.93460 1.22088 1.00352 1.00310 0.98170 1.45651 1.15711 1.11650 1.62140 1.17897 0.82394 0.87071 0.77692 1.90820 1.52419 1.57040 1.44430 1.19946 0.95160 0.95225 1.09662 1.26069 1.05640 0.99186 1.02928 1.82751 1.01506 1.04606 1.52644 1.25827 1.06834 0.96415 1.08561 1.20911 0.91310 0.92614 1.03122 1.98382 1.50671 1.72506 1.80624 1.42838 1.79762 1.09424 1.07224 1.18953 1.33838 0.94110 0.87267 0.92780 1.25402 1.02959 1.02015 0.95521 1.69874 1.55509 1.37384 1.01107 0.85522 0.77544 0.81831 0.77601 1.19925 1.23255 1.18275 0.90078 0.95614 0.93063 0.86854 0.89580 0.89798 0.90814 0.94600 0.75287 0.77530 0.78447 0.80607 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 9.49 71.98 0.68 -4.01 16 2 C 0.17 5.65 2.84 44.99 0.13 5.77 16 3 H 0.04 1.55 7.56 -2.39 -0.02 1.54 16 4 C -0.12 -2.94 4.29 30.59 0.13 -2.80 16 5 C 0.14 4.21 2.52 44.99 0.11 4.32 16 6 H 0.05 1.94 7.05 -2.39 -0.02 1.92 16 7 C -0.15 -3.59 9.48 71.98 0.68 -2.91 16 8 N -0.70 -19.21 4.42 -446.05 -1.97 -21.18 16 9 C 0.56 19.61 7.76 86.58 0.67 20.28 16 10 O -0.57 -25.34 14.72 -4.14 -0.06 -25.41 16 11 C -0.18 -5.09 5.98 -19.86 -0.12 -5.21 16 12 C -0.20 -3.49 10.38 67.31 0.70 -2.79 16 13 S 0.32 4.03 23.02 -56.49 -1.30 2.72 16 14 C -0.24 -4.63 11.00 66.64 0.73 -3.89 16 15 C -0.04 -1.17 6.49 22.68 0.15 -1.02 16 16 Cl -0.05 -1.69 27.24 -2.72 -0.07 -1.77 16 17 N -0.75 -34.64 4.30 -322.93 -1.39 -36.03 16 18 C -0.21 -12.25 10.41 84.03 0.87 -11.37 16 19 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 20 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 21 N -0.99 -66.35 13.97 21.65 0.30 -66.05 16 22 Si 0.95 48.83 27.74 68.60 1.90 50.74 16 23 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.31 -16.31 7.11 99.48 0.71 -15.60 16 25 H -0.26 -12.33 6.52 99.48 0.65 -11.68 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.41 7.79 7.10 -92.71 -0.66 7.13 16 35 H 0.21 2.10 7.01 -2.91 -0.02 2.08 16 36 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.36 16.49 5.66 -92.71 -0.52 15.97 16 38 H 0.25 16.39 8.31 -92.71 -0.77 15.62 16 Total: -1.00 -84.52 346.22 2.47 -82.05 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.15 Total: 22.31 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.21 Total: -7.39 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -3.05 Total: -123.26 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.06 Total: -25.41 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 1.90 Total: 50.74 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.30 Total: 2.72 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.07 Total: -1.77 kcal Total: -84.52 2.47 -82.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134685950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.753 kcal (2) G-P(sol) polarization free energy of solvation -84.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds