Wall clock time and date at job start Tue Mar 31 2020 11:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47690 * 2 1 4 4 C 1.52997 * 109.47443 * 239.99274 * 2 1 3 5 5 C 1.53000 * 109.46862 * 65.88321 * 4 2 1 6 6 H 1.09006 * 109.47347 * 305.35862 * 5 4 2 7 7 C 1.52998 * 109.47435 * 185.36049 * 5 4 2 8 8 N 1.46500 * 109.47401 * 65.35805 * 5 4 2 9 9 C 1.34770 * 120.00322 * 207.04566 * 8 5 4 10 10 O 1.21659 * 120.00244 * 5.31577 * 9 8 5 11 11 C 1.47048 * 120.00273 * 185.31443 * 9 8 5 12 12 C 1.44505 * 123.48711 * 354.94594 * 11 9 8 13 13 C 1.32693 * 113.09522 * 180.02562 * 12 11 9 14 14 S 1.75494 * 110.63395 * 0.02562 * 13 12 11 15 15 C 1.36222 * 123.49437 * 175.00236 * 11 9 8 16 16 Cl 1.73602 * 124.60389 * 359.97438 * 15 11 9 17 17 N 1.46506 * 109.46980 * 119.99688 * 2 1 3 18 18 C 1.36940 * 119.99767 * 277.53328 * 17 2 1 19 19 H 1.08005 * 120.00056 * 4.93167 * 18 17 2 20 20 C 1.38811 * 120.00046 * 184.92143 * 18 17 2 21 21 N 1.31614 * 120.00230 * 184.37352 * 20 18 17 22 22 Si 1.86799 * 119.99786 * 4.37700 * 20 18 17 23 23 H 1.48507 * 109.46936 * 93.46972 * 22 20 18 24 24 H 1.48495 * 109.47420 * 213.47037 * 22 20 18 25 25 H 1.48500 * 109.47328 * 333.47170 * 22 20 18 26 26 H 1.08994 * 109.47386 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47330 * 300.00568 * 1 2 3 28 28 H 1.09003 * 109.47028 * 59.99911 * 1 2 3 29 29 H 1.09002 * 109.47038 * 305.88514 * 4 2 1 30 30 H 1.08997 * 109.47676 * 185.88593 * 4 2 1 31 31 H 1.09006 * 109.46700 * 300.00209 * 7 5 4 32 32 H 1.08998 * 109.47274 * 59.99837 * 7 5 4 33 33 H 1.08998 * 109.47459 * 180.02562 * 7 5 4 34 34 H 0.97005 * 119.99376 * 27.04169 * 8 5 4 35 35 H 1.08001 * 123.45623 * 0.07102 * 12 11 9 36 36 H 1.08007 * 124.68335 * 179.97438 * 13 12 11 37 37 H 0.96996 * 119.99956 * 97.53638 * 17 2 1 38 38 H 0.97002 * 119.99820 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6543 0.0801 -2.4940 6 1 0.5782 0.2538 -2.4954 7 6 2.0456 -0.7051 -3.7476 8 7 2.3566 1.3658 -2.4841 9 6 1.8215 2.4307 -3.1133 10 8 0.7121 2.3519 -3.6064 11 6 2.5786 3.6881 -3.2040 12 6 3.8534 3.8996 -2.5571 13 6 4.3534 5.1091 -2.7753 14 16 3.2751 6.0502 -3.7908 15 6 2.1505 4.7745 -3.9054 16 17 0.6615 4.8496 -4.7949 17 7 2.0183 -0.6906 1.1963 18 6 2.0999 -0.0210 2.3880 19 1 1.7303 0.9909 2.4653 20 6 2.6574 -0.6428 3.4968 21 7 2.6581 -0.0323 4.6627 22 14 3.4068 -2.3461 3.3339 23 1 4.8634 -2.2231 3.0722 24 1 3.1923 -3.1038 4.5929 25 1 2.7605 -3.0656 2.2070 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.5932 -1.7141 -1.3032 30 1 3.1249 -0.8136 -1.1980 31 1 3.1217 -0.8789 -3.7462 32 1 1.5231 -1.6617 -3.7550 33 1 1.7713 -0.1339 -4.6345 34 1 3.2066 1.4505 -2.0246 35 1 4.3488 3.1498 -1.9581 36 1 5.2939 5.4656 -2.3816 37 1 2.2838 -1.6220 1.1441 38 1 3.0480 -0.4668 5.4374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135614465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:21 Heat of formation + Delta-G solvation = -1.561491 kcal Electronic energy + Delta-G solvation = -21844.001220 eV Core-core repulsion = 18453.386283 eV Total energy + Delta-G solvation = -3390.614937 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.06804 -37.72620 -36.81488 -36.53515 -34.74670 -32.22755 -30.99459 -29.75809 -29.06279 -26.39550 -25.30265 -23.54038 -22.02692 -21.00982 -19.82403 -19.64628 -18.70272 -17.65184 -16.76346 -16.13551 -15.32908 -14.72652 -14.68652 -14.37759 -14.19727 -13.77243 -13.68566 -13.43301 -13.27115 -13.11768 -12.62308 -12.51455 -12.17537 -11.98994 -11.77334 -11.69505 -11.42503 -11.31429 -11.12877 -10.96884 -10.66401 -10.53138 -10.19519 -9.95049 -9.76977 -9.59854 -9.12753 -9.00009 -8.92662 -8.75478 -7.25901 -5.77620 -3.12816 0.34534 0.75077 1.42846 1.71069 1.98450 3.27195 3.28550 3.35122 3.38226 3.44255 4.46767 4.57831 4.76537 4.78998 4.98166 5.18064 5.30262 5.39372 5.48775 5.56704 5.61257 5.65827 5.74343 5.79445 5.86354 5.97454 6.12958 6.19943 6.26569 6.43537 6.55237 6.63216 6.86630 7.06252 7.55497 8.01226 8.25572 8.41966 9.21669 9.93965 10.14671 11.40869 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003425 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.513006 B = 8174.384052 C = 8963.024785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.053 0.947 4 C -0.137 4.137 5 C 0.143 3.857 6 H 0.097 0.903 7 C -0.161 4.161 8 N -0.711 5.711 9 C 0.575 3.425 10 O -0.525 6.525 11 C -0.150 4.150 12 C -0.099 4.099 13 C -0.224 4.224 14 S 0.217 5.783 15 C -0.124 4.124 16 Cl 0.018 6.982 17 N -0.751 5.751 18 C -0.240 4.240 19 H 0.088 0.912 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.401 0.599 35 H 0.159 0.841 36 H 0.178 0.822 37 H 0.361 0.639 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 9.268 -21.262 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.175 4.175 5 C 0.038 3.962 6 H 0.115 0.885 7 C -0.220 4.220 8 N -0.363 5.363 9 C 0.360 3.640 10 O -0.402 6.402 11 C -0.169 4.169 12 C -0.128 4.128 13 C -0.360 4.360 14 S 0.481 5.519 15 C -0.271 4.271 16 Cl 0.047 6.953 17 N -0.395 5.395 18 C -0.370 4.370 19 H 0.106 0.894 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.718 3.282 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.205 1.205 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.176 0.824 36 H 0.195 0.805 37 H 0.194 0.806 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.723 10.830 -22.091 24.753 hybrid contribution 0.759 -2.684 0.926 2.939 sum 3.482 8.146 -21.164 22.944 Atomic orbital electron populations 1.22441 0.98886 1.00785 1.00537 1.20162 0.92212 0.95652 0.85095 0.92881 1.22228 1.01761 0.99523 0.94012 1.21070 0.98551 0.81927 0.94621 0.88505 1.22179 1.01649 1.00259 0.97865 1.45918 1.25413 1.10077 1.54921 1.17360 0.85403 0.82468 0.78737 1.90837 1.18653 1.83571 1.47132 1.20383 0.97231 0.95766 1.03522 1.21198 0.93524 0.97858 1.00224 1.25540 1.05429 0.98404 1.06587 1.83190 1.08905 1.12914 1.46888 1.25263 0.97136 1.00548 1.04179 1.98412 1.27624 1.97757 1.71510 1.42879 1.79444 1.10920 1.06246 1.19060 1.32971 0.99024 0.85979 0.89397 1.24695 1.01184 0.97844 0.95485 1.69713 1.50740 1.38319 0.99452 0.86509 0.79525 0.85545 0.76624 1.21251 1.21869 1.20485 0.93627 0.92603 0.93906 0.90591 0.91280 0.92555 0.91568 0.92454 0.76417 0.82368 0.80512 0.80562 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.24 37.16 0.34 -2.70 16 2 C 0.18 3.29 2.91 -67.93 -0.20 3.10 16 3 H 0.05 1.03 7.57 -51.93 -0.39 0.64 16 4 C -0.14 -1.95 4.39 -26.73 -0.12 -2.06 16 5 C 0.14 1.85 2.53 -67.93 -0.17 1.67 16 6 H 0.10 1.42 5.67 -51.93 -0.29 1.13 16 7 C -0.16 -1.78 9.50 37.16 0.35 -1.43 16 8 N -0.71 -8.92 4.41 -55.00 -0.24 -9.16 16 9 C 0.58 8.15 7.76 -12.69 -0.10 8.05 16 10 O -0.52 -8.88 14.53 5.23 0.08 -8.81 16 11 C -0.15 -1.82 5.98 -104.58 -0.63 -2.45 16 12 C -0.10 -0.94 9.90 -39.00 -0.39 -1.32 16 13 C -0.22 -1.75 11.11 28.84 0.32 -1.43 16 14 S 0.22 1.79 23.02 -107.50 -2.47 -0.68 16 15 C -0.12 -1.45 6.87 30.01 0.21 -1.24 16 16 Cl 0.02 0.22 27.21 -51.86 -1.41 -1.19 16 17 N -0.75 -17.25 4.93 -53.42 -0.26 -17.52 16 18 C -0.24 -6.67 10.39 -15.06 -0.16 -6.82 16 19 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 22 Si 0.89 21.80 27.98 -169.99 -4.76 17.04 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.38 6.20 56.52 0.35 -6.03 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.71 6.49 -51.93 -0.34 0.37 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.40 4.35 7.19 -40.82 -0.29 4.05 16 35 H 0.16 1.23 7.11 -52.49 -0.37 0.85 16 36 H 0.18 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.36 8.15 5.53 -40.82 -0.23 7.93 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -33.08 343.51 -8.65 -41.73 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.91 Total: 8.36 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.63 Total: -6.63 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.27 Total: -55.02 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.76 Total: 17.04 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.47 Total: -0.68 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.41 Total: -1.19 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.08 -8.65 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135614465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.171 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds