Wall clock time and date at job start Tue Mar 31 2020 11:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47690 * 2 1 4 4 C 1.52997 * 109.47443 * 239.99274 * 2 1 3 5 5 C 1.53000 * 109.46862 * 65.88321 * 4 2 1 6 6 H 1.09006 * 109.47347 * 305.35862 * 5 4 2 7 7 C 1.52998 * 109.47435 * 185.36049 * 5 4 2 8 8 N 1.46500 * 109.47401 * 65.35805 * 5 4 2 9 9 C 1.34770 * 120.00322 * 207.04566 * 8 5 4 10 10 O 1.21659 * 120.00244 * 5.31577 * 9 8 5 11 11 C 1.47048 * 120.00273 * 185.31443 * 9 8 5 12 12 C 1.44505 * 123.48711 * 354.94594 * 11 9 8 13 13 C 1.32693 * 113.09522 * 180.02562 * 12 11 9 14 14 S 1.75494 * 110.63395 * 0.02562 * 13 12 11 15 15 C 1.36222 * 123.49437 * 175.00236 * 11 9 8 16 16 Cl 1.73602 * 124.60389 * 359.97438 * 15 11 9 17 17 N 1.46506 * 109.46980 * 119.99688 * 2 1 3 18 18 C 1.36940 * 119.99767 * 277.53328 * 17 2 1 19 19 H 1.08005 * 120.00056 * 4.93167 * 18 17 2 20 20 C 1.38811 * 120.00046 * 184.92143 * 18 17 2 21 21 N 1.31614 * 120.00230 * 184.37352 * 20 18 17 22 22 Si 1.86799 * 119.99786 * 4.37700 * 20 18 17 23 23 H 1.48507 * 109.46936 * 93.46972 * 22 20 18 24 24 H 1.48495 * 109.47420 * 213.47037 * 22 20 18 25 25 H 1.48500 * 109.47328 * 333.47170 * 22 20 18 26 26 H 1.08994 * 109.47386 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47330 * 300.00568 * 1 2 3 28 28 H 1.09003 * 109.47028 * 59.99911 * 1 2 3 29 29 H 1.09002 * 109.47038 * 305.88514 * 4 2 1 30 30 H 1.08997 * 109.47676 * 185.88593 * 4 2 1 31 31 H 1.09006 * 109.46700 * 300.00209 * 7 5 4 32 32 H 1.08998 * 109.47274 * 59.99837 * 7 5 4 33 33 H 1.08998 * 109.47459 * 180.02562 * 7 5 4 34 34 H 0.97005 * 119.99376 * 27.04169 * 8 5 4 35 35 H 1.08001 * 123.45623 * 0.07102 * 12 11 9 36 36 H 1.08007 * 124.68335 * 179.97438 * 13 12 11 37 37 H 0.96996 * 119.99956 * 97.53638 * 17 2 1 38 38 H 0.97002 * 119.99820 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6543 0.0801 -2.4940 6 1 0.5782 0.2538 -2.4954 7 6 2.0456 -0.7051 -3.7476 8 7 2.3566 1.3658 -2.4841 9 6 1.8215 2.4307 -3.1133 10 8 0.7121 2.3519 -3.6064 11 6 2.5786 3.6881 -3.2040 12 6 3.8534 3.8996 -2.5571 13 6 4.3534 5.1091 -2.7753 14 16 3.2751 6.0502 -3.7908 15 6 2.1505 4.7745 -3.9054 16 17 0.6615 4.8496 -4.7949 17 7 2.0183 -0.6906 1.1963 18 6 2.0999 -0.0210 2.3880 19 1 1.7303 0.9909 2.4653 20 6 2.6574 -0.6428 3.4968 21 7 2.6581 -0.0323 4.6627 22 14 3.4068 -2.3461 3.3339 23 1 4.8634 -2.2231 3.0722 24 1 3.1923 -3.1038 4.5929 25 1 2.7605 -3.0656 2.2070 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.5932 -1.7141 -1.3032 30 1 3.1249 -0.8136 -1.1980 31 1 3.1217 -0.8789 -3.7462 32 1 1.5231 -1.6617 -3.7550 33 1 1.7713 -0.1339 -4.6345 34 1 3.2066 1.4505 -2.0246 35 1 4.3488 3.1498 -1.9581 36 1 5.2939 5.4656 -2.3816 37 1 2.2838 -1.6220 1.1441 38 1 3.0480 -0.4668 5.4374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135614465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:20 Heat of formation + Delta-G solvation = -23.344272 kcal Electronic energy + Delta-G solvation = -21844.945793 eV Core-core repulsion = 18453.386283 eV Total energy + Delta-G solvation = -3391.559509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09725 -38.78642 -37.96457 -37.41791 -36.23951 -34.06029 -32.33759 -30.78621 -30.45700 -27.65907 -26.24958 -25.39082 -22.94410 -22.24289 -21.29386 -20.59775 -19.68394 -19.42023 -17.69684 -17.18206 -16.75983 -16.22538 -15.93909 -15.63350 -15.28039 -14.92709 -14.67400 -14.61136 -14.38306 -14.37624 -13.97535 -13.89590 -13.50634 -13.32866 -12.97698 -12.80596 -12.71591 -12.60383 -12.21167 -12.11962 -12.07708 -11.99303 -11.81548 -11.58028 -11.51101 -10.96079 -10.82876 -10.09398 -9.83532 -9.51087 -9.28677 -7.99166 -5.32621 -0.47949 0.01071 0.70296 0.93700 1.18040 1.40609 1.45084 1.52464 2.28231 2.29776 2.51967 3.31719 3.45471 3.71052 3.99353 3.99881 4.10729 4.20128 4.28533 4.46671 4.58145 4.65048 4.69253 4.82446 4.91866 4.95693 4.97505 5.05816 5.09153 5.11846 5.32895 5.39283 5.48107 5.63218 5.81595 6.25142 6.55882 7.12506 7.23298 7.88435 8.09593 9.22734 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003425 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.513006 B = 8174.384052 C = 8963.024785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.173 3.827 3 H 0.040 0.960 4 C -0.122 4.122 5 C 0.147 3.853 6 H 0.078 0.922 7 C -0.152 4.152 8 N -0.705 5.705 9 C 0.569 3.431 10 O -0.561 6.561 11 C -0.170 4.170 12 C -0.113 4.113 13 C -0.212 4.212 14 S 0.268 5.732 15 C -0.152 4.152 16 Cl -0.001 7.001 17 N -0.750 5.750 18 C -0.227 4.227 19 H 0.048 0.952 20 C -0.066 4.066 21 N -0.987 5.987 22 Si 0.961 3.039 23 H -0.278 1.278 24 H -0.301 1.301 25 H -0.248 1.248 26 H 0.054 0.946 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.409 0.591 35 H 0.173 0.827 36 H 0.210 0.790 37 H 0.368 0.632 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 8.193 -22.830 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.059 0.941 4 C -0.160 4.160 5 C 0.042 3.958 6 H 0.096 0.904 7 C -0.211 4.211 8 N -0.357 5.357 9 C 0.356 3.644 10 O -0.441 6.441 11 C -0.191 4.191 12 C -0.141 4.141 13 C -0.348 4.348 14 S 0.533 5.467 15 C -0.299 4.299 16 Cl 0.028 6.972 17 N -0.395 5.395 18 C -0.358 4.358 19 H 0.067 0.933 20 C -0.257 4.257 21 N -0.638 5.638 22 Si 0.788 3.212 23 H -0.204 1.204 24 H -0.229 1.229 25 H -0.172 1.172 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.246 0.754 35 H 0.190 0.810 36 H 0.227 0.773 37 H 0.202 0.798 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.662 9.755 -23.714 26.062 hybrid contribution 0.131 -2.180 1.402 2.596 sum 4.793 7.575 -22.312 24.045 Atomic orbital electron populations 1.22331 0.98698 1.01116 0.99689 1.20342 0.92166 0.95418 0.85527 0.94144 1.22080 1.02498 0.99655 0.91807 1.20990 0.97585 0.82154 0.95066 0.90430 1.22094 1.02750 1.00258 0.95965 1.45894 1.25574 1.09776 1.54499 1.17729 0.85157 0.83330 0.78226 1.90809 1.20232 1.84284 1.48799 1.20468 0.98504 0.95158 1.04922 1.21307 0.92752 0.99138 1.00943 1.25997 1.06078 0.97567 1.05120 1.83032 1.07122 1.10913 1.45663 1.25627 0.97409 1.02162 1.04652 1.98396 1.28952 1.97888 1.71936 1.42836 1.79511 1.11167 1.05955 1.18963 1.31325 0.97647 0.87887 0.93346 1.25543 1.02434 1.02761 0.94931 1.69909 1.52612 1.40726 1.00512 0.85324 0.78847 0.79948 0.77068 1.20370 1.22852 1.17227 0.92646 0.95808 0.92393 0.89083 0.89917 0.91071 0.90153 0.93536 0.75378 0.80971 0.77281 0.79834 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.73 9.24 71.98 0.66 -5.07 16 2 C 0.17 6.23 2.91 44.99 0.13 6.36 16 3 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 4 C -0.12 -3.14 4.39 30.59 0.13 -3.01 16 5 C 0.15 3.54 2.53 44.99 0.11 3.66 16 6 H 0.08 2.21 5.67 -2.38 -0.01 2.20 16 7 C -0.15 -2.99 9.50 71.98 0.68 -2.30 16 8 N -0.71 -16.97 4.41 -446.15 -1.97 -18.94 16 9 C 0.57 16.11 7.76 86.55 0.67 16.78 16 10 O -0.56 -19.40 14.53 -4.22 -0.06 -19.46 16 11 C -0.17 -4.06 5.98 -19.84 -0.12 -4.18 16 12 C -0.11 -1.94 9.90 22.70 0.22 -1.72 16 13 C -0.21 -2.71 11.11 66.65 0.74 -1.97 16 14 S 0.27 3.91 23.02 -56.49 -1.30 2.61 16 15 C -0.15 -3.46 6.87 67.35 0.46 -3.00 16 16 Cl 0.00 -0.01 27.21 -2.72 -0.07 -0.09 16 17 N -0.75 -33.46 4.93 -322.93 -1.59 -35.05 16 18 C -0.23 -12.73 10.39 84.03 0.87 -11.86 16 19 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 20 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 21 N -0.99 -62.95 13.97 21.65 0.30 -62.65 16 22 Si 0.96 44.28 27.98 68.60 1.92 46.20 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.25 -10.04 6.20 99.48 0.62 -9.42 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.91 6.49 -2.39 -0.02 1.89 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.41 8.27 7.19 -92.70 -0.67 7.60 16 35 H 0.17 2.32 7.11 -2.91 -0.02 2.30 16 36 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.37 15.46 5.53 -92.71 -0.51 14.95 16 38 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -73.89 343.51 2.11 -71.78 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -0.17 Total: 25.24 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 5.05 Total: -9.64 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -3.26 Total: -116.64 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.92 Total: 46.20 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.30 Total: 2.61 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.07 Total: -0.09 kcal Total: -73.89 2.11 -71.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135614465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.433 kcal (2) G-P(sol) polarization free energy of solvation -73.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds