Wall clock time and date at job start Tue Mar 31 2020 11:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 5 5 C 1.52998 * 109.47384 * 185.00170 * 4 2 1 6 6 H 1.09004 * 109.46526 * 304.99490 * 5 4 2 7 7 C 1.52999 * 109.47036 * 184.99951 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99625 * 5 4 2 9 9 C 1.34779 * 119.99550 * 205.00192 * 8 5 4 10 10 O 1.21648 * 120.00497 * 0.02562 * 9 8 5 11 11 C 1.47047 * 119.99548 * 180.02562 * 9 8 5 12 12 C 1.44510 * 123.49582 * 0.02562 * 11 9 8 13 13 C 1.32690 * 113.09862 * 179.97438 * 12 11 9 14 14 S 1.75493 * 110.63358 * 359.97438 * 13 12 11 15 15 C 1.36225 * 123.49012 * 179.70326 * 11 9 8 16 16 Cl 1.73604 * 124.60694 * 0.02562 * 15 11 9 17 17 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 18 18 C 1.36935 * 120.00239 * 84.99640 * 17 2 1 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 2 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 2 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 27 27 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 29 29 H 1.08997 * 109.46795 * 304.99831 * 4 2 1 30 30 H 1.08999 * 109.47341 * 64.99651 * 4 2 1 31 31 H 1.09003 * 109.47191 * 179.97438 * 7 5 4 32 32 H 1.08996 * 109.47126 * 299.99873 * 7 5 4 33 33 H 1.09004 * 109.47346 * 59.99769 * 7 5 4 34 34 H 0.96994 * 120.00193 * 25.00319 * 8 5 4 35 35 H 1.07996 * 123.44350 * 359.95096 * 12 11 9 36 36 H 1.08007 * 124.67662 * 179.97438 * 13 12 11 37 37 H 0.97004 * 119.99747 * 265.00379 * 17 2 1 38 38 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9953 -0.9923 0.3867 7 6 4.0851 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0865 10 8 5.9379 0.4317 0.5714 11 6 5.5459 2.6213 1.2664 12 6 4.6842 3.6129 1.8685 13 6 5.2386 4.8169 1.9284 14 16 6.8546 4.7884 1.2447 15 6 6.7541 3.1246 0.8885 16 17 8.0184 2.1979 0.1424 17 7 2.0183 -0.6906 -1.1962 18 6 2.1490 -0.0075 -2.3758 19 1 1.8925 1.0405 -2.4242 20 6 2.6112 -0.6619 -3.5093 21 7 2.9290 -1.9378 -3.4489 22 14 2.7902 0.2701 -5.1183 23 1 1.5246 0.1742 -5.8892 24 1 3.0895 1.6964 -4.8334 25 1 3.8987 -0.3195 -5.9112 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6054 -0.2617 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 5.1715 -1.3617 2.5381 32 1 3.6546 -1.0593 3.4193 33 1 3.8001 -2.4819 2.3594 34 1 3.3285 1.4129 1.9027 35 1 3.6907 3.3961 2.2321 36 1 4.7611 5.6934 2.3411 37 1 2.2489 -1.6318 -1.1526 38 1 2.8364 -2.4217 -2.6134 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135614467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:28 Heat of formation + Delta-G solvation = -3.921867 kcal Electronic energy + Delta-G solvation = -22302.589522 eV Core-core repulsion = 18911.872231 eV Total energy + Delta-G solvation = -3390.717291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.82306 -37.56128 -36.64247 -36.37900 -34.56702 -32.29443 -30.75588 -29.61249 -28.27510 -26.38296 -25.08620 -23.37100 -21.94961 -20.90278 -19.86854 -19.48787 -18.57945 -17.32544 -16.73280 -15.84360 -14.97653 -14.95835 -14.46525 -14.16381 -14.06060 -13.63960 -13.55444 -13.39137 -13.18077 -12.99186 -12.84020 -12.13549 -12.06858 -11.68213 -11.67114 -11.61910 -11.32973 -11.01268 -10.90441 -10.69601 -10.44880 -10.41604 -10.06891 -9.93678 -9.50401 -9.08352 -8.98967 -8.83233 -8.80347 -8.58664 -6.93610 -5.99853 -2.99032 0.48314 0.87398 1.53278 1.82837 2.15155 3.45936 3.56300 3.58588 3.62372 3.76027 4.56461 4.75051 4.87614 4.99544 5.13768 5.36554 5.39590 5.52908 5.63742 5.65221 5.70718 5.84216 5.88262 5.90700 5.95966 6.07817 6.23495 6.32454 6.38991 6.49552 6.64611 6.78649 6.89480 7.02794 7.78762 7.89451 8.54071 8.85529 9.32592 10.18692 10.33226 11.48703 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.004852 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.460088 B = 5769.421892 C = 6746.067131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.132 4.132 5 C 0.146 3.854 6 H 0.103 0.897 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.573 3.427 10 O -0.513 6.513 11 C -0.146 4.146 12 C -0.099 4.099 13 C -0.228 4.228 14 S 0.213 5.787 15 C -0.123 4.123 16 Cl 0.022 6.978 17 N -0.731 5.731 18 C -0.324 4.324 19 H 0.061 0.939 20 C -0.044 4.044 21 N -0.944 5.944 22 Si 1.078 2.922 23 H -0.297 1.297 24 H -0.296 1.296 25 H -0.288 1.288 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.392 0.608 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.365 0.635 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 13.365 16.551 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.042 3.958 6 H 0.121 0.879 7 C -0.219 4.219 8 N -0.360 5.360 9 C 0.357 3.643 10 O -0.389 6.389 11 C -0.165 4.165 12 C -0.129 4.129 13 C -0.363 4.363 14 S 0.477 5.523 15 C -0.270 4.270 16 Cl 0.051 6.949 17 N -0.374 5.374 18 C -0.455 4.455 19 H 0.079 0.921 20 C -0.241 4.241 21 N -0.590 5.590 22 Si 0.909 3.091 23 H -0.225 1.225 24 H -0.223 1.223 25 H -0.214 1.214 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.226 0.774 35 H 0.172 0.828 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.407 13.886 14.265 20.913 hybrid contribution -1.910 -0.933 1.906 2.855 sum 4.497 12.954 16.171 21.202 Atomic orbital electron populations 1.22442 0.99502 1.00703 0.99833 1.20153 0.91501 0.95556 0.86092 0.93516 1.22191 0.93824 1.02134 0.98941 1.21002 0.94953 0.80035 0.99794 0.87914 1.22185 1.01661 1.00071 0.97994 1.45768 1.16055 1.11585 1.62618 1.17307 0.82425 0.85920 0.78638 1.90873 1.50845 1.55288 1.41895 1.20439 0.93643 0.96417 1.06005 1.21122 1.00377 0.91264 1.00096 1.25478 0.99093 1.02339 1.09426 1.83123 1.13586 0.99487 1.56146 1.25269 0.96012 0.99506 1.06212 1.98425 1.46282 1.71323 1.78837 1.42395 1.79113 1.09651 1.06240 1.19965 1.41648 0.94832 0.89068 0.92136 1.25645 0.99475 0.97546 1.01483 1.70839 1.51288 1.08432 1.28407 0.83261 0.76350 0.73931 0.75509 1.22474 1.22300 1.21414 0.92859 0.93680 0.94642 0.91929 0.90731 0.92394 0.93079 0.91781 0.77364 0.82761 0.80719 0.80127 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.18 3.39 2.84 -67.93 -0.19 3.20 16 3 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 5 C 0.15 2.39 2.52 -67.93 -0.17 2.22 16 6 H 0.10 2.21 7.05 -51.93 -0.37 1.84 16 7 C -0.16 -2.23 9.48 37.16 0.35 -1.87 16 8 N -0.71 -10.69 4.43 -55.00 -0.24 -10.94 16 9 C 0.57 10.05 7.75 -12.69 -0.10 9.95 16 10 O -0.51 -11.06 14.57 5.24 0.08 -10.98 16 11 C -0.15 -2.12 5.98 -104.58 -0.63 -2.75 16 12 C -0.10 -1.03 9.90 -39.00 -0.39 -1.42 16 13 C -0.23 -1.95 11.11 28.84 0.32 -1.63 16 14 S 0.21 2.08 23.02 -107.50 -2.47 -0.39 16 15 C -0.12 -1.74 6.87 30.01 0.21 -1.53 16 16 Cl 0.02 0.35 27.20 -51.86 -1.41 -1.06 16 17 N -0.73 -18.10 4.49 -53.43 -0.24 -18.34 16 18 C -0.32 -9.23 9.93 -15.06 -0.15 -9.38 16 19 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 20 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 21 N -0.94 -30.01 13.70 55.49 0.76 -29.25 16 22 Si 1.08 27.22 29.92 -169.99 -5.09 22.13 16 23 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.39 4.65 7.15 -40.82 -0.29 4.36 16 35 H 0.15 1.20 7.10 -52.49 -0.37 0.83 16 36 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.37 9.46 6.63 -40.82 -0.27 9.19 16 38 H 0.25 7.96 6.77 -40.82 -0.28 7.68 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -35.02 347.60 -8.96 -43.98 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.98 Total: 8.91 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.60 Total: -9.29 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.28 Total: -58.53 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 27.22 SS G_CDS: -5.09 Total: 22.13 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.47 Total: -0.39 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.41 Total: -1.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.02 -8.96 -43.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135614467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.062 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds